Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F422 I53 R1	229	158.0	8090706	91.1%	7370633	100.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	797,813	A→C	W207G (TGG→GGG)	ybhA ←	pyridoxal phosphate (PLP) phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	797,813	0	A	C	97.7%	446.7 / ‑1.7	133	W207G (TGG→GGG)	ybhA	pyridoxal phosphate (PLP) phosphatase
Reads supporting (aligned to +/- strand): ref base A (1/2); new base C (68/62); total (69/64)
Fisher's exact test for biased strand distribution p-value = 6.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.43e-01

Only 100 of 135 total aligned reads displayed.

GCCACGCCTGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCATTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCATGTTCGAC  >  NC_000913/797716‑797909

nccACGCCTGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCtt                                                                                                >  1:793649/2‑100 (MQ=255)

  cACGCCTGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTc                                                                                              >  1:1220229/1‑100 (MQ=255)

    cGCCTGTACCCGCGGCTTCCAGCATACTGAGATCATTAAAGTTATCGCCGAATGCGACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGt                                                                                            <  2:2301373/100‑1 (MQ=255)

    cGCCTGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGt                                                                                            <  2:1870410/100‑1 (MQ=255)

     gCCTGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTc                                                                                           <  2:3656050/100‑1 (MQ=255)

     gCCTGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTc                                                                                           <  1:2292302/100‑1 (MQ=255)

     gCCTGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCCCAACCCCTTTCGTc                                                                                           <  2:674860/100‑1 (MQ=255)

      ccTGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCGTCAACCCCTTTCGTCa                                                                                          >  1:3354611/1‑100 (MQ=255)

      ccTGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCa                                                                                          <  2:2758616/100‑1 (MQ=255)

       cTGTACCAGCGGCTTCCAGAAGACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCaa                                                                                         >  1:3485966/1‑100 (MQ=255)

        tGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCaaa                                                                                        <  2:2652659/100‑1 (MQ=255)

        tGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCaaa                                                                                        >  1:3870287/1‑100 (MQ=255)

         gTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATACCACGACG‑TTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACg                                                                                      <  2:3627762/100‑1 (MQ=255)

           aCCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGt                                                                                     >  1:3672170/1‑100 (MQ=255)

              aGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCTTCAAACGTTTa                                                                                  >  2:665454/1‑100 (MQ=255)

               gCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTAc                                                                                 >  2:3655131/1‑100 (MQ=255)

               gCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTAc                                                                                 >  2:3367941/1‑100 (MQ=255)

                 ggCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCt                                                                               >  1:1602458/1‑100 (MQ=255)

                   cTTCCAGCATACTGATATCATGAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCttt                                                                             <  1:2977140/100‑1 (MQ=255)

                     tCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGc                                                                           <  1:1092097/100‑1 (MQ=255)

                     tCCAGCATACTCATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGc                                                                           >  2:3798708/1‑100 (MQ=255)

                      ccAGCATACTGATATCAGTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCt                                                                          <  2:2733997/100‑1 (MQ=255)

                       cAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTg                                                                         <  1:446108/100‑1 (MQ=255)

                       cAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTg                                                                         >  2:2628829/1‑100 (MQ=255)

                       cAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTg                                                                         <  2:2301658/100‑1 (MQ=255)

                          cATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTg                                                                      <  2:545341/100‑1 (MQ=255)

                           aTACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTgc                                                                     <  1:275198/100‑1 (MQ=255)

                            tACTGATATCATTTAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTgcc                                                                    <  2:595439/100‑1 (MQ=255)

                            tACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTgcc                                                                    >  1:2132817/1‑100 (MQ=255)

                              cTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTgccgc                                                                  >  2:102121/1‑100 (MQ=255)

                              cTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTgccgc                                                                  >  2:1525546/1‑100 (MQ=255)

                               tGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTgccgcc                                                                 <  2:1328608/100‑1 (MQ=255)

                                gATATCATTAAAGTTATCGCCGAATGCCCTGTCGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGccgccg                                                                <  2:2486229/100‑1 (MQ=255)

                                gATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGccgccg                                                                >  2:2186777/1‑100 (MQ=255)

                                    tCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTg                                                            <  2:1697754/100‑1 (MQ=255)

                                     cATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAGCCTTGCGCCTCAACCCCTTTCGTCAAGCGTTTACCTTTGCTGTTGCTGTCGCGTGc                                                           <  2:3296512/100‑1 (MQ=255)

                                     cATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGc                                                           >  2:3962913/1‑100 (MQ=255)

                                     cATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGc                                                           >  1:3080862/1‑100 (MQ=255)

                                     cATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCAGCCGCGTGc                                                           >  1:1845883/1‑100 (MQ=255)

                                      aTTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCa                                                          >  1:3670005/1‑100 (MQ=255)

                                      aTTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCa                                                          >  2:2034732/1‑100 (MQ=255)

                                            gTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCa                                                    >  1:962419/1‑100 (MQ=255)

                                             ttATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCaa                                                   >  1:2537547/1‑100 (MQ=255)

                                               aTCGCCGAATGCCACGGCGATTACCAGCGCCAAACCATGCGCCGCAACCCCTTTCGTAAAACATTTACCTACACTATTGCCGCCGCGTGCAAGATCAAcc                                                 >  2:2925167/1‑100 (MQ=255)

                                               aTCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAAcc                                                 <  1:608280/100‑1 (MQ=255)

                                                  gCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGa                                              >  2:2318887/1‑100 (MQ=255)

                                                  gCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGa                                              >  2:1356446/1‑100 (MQ=255)

                                                  gCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGa                                              >  2:168463/1‑100 (MQ=255)

                                                  gCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGa                                              >  1:579334/1‑100 (MQ=255)

                                                  gCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGa                                              >  1:1803367/1‑100 (MQ=255)

                                                  gCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGa                                              >  2:2164804/1‑100 (MQ=255)

                                                   ccGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGAt                                             <  1:3077522/100‑1 (MQ=255)

                                                    cGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATc                                            <  1:3099475/100‑1 (MQ=255)

                                                    cGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTCGCCGCCGCGTGCAATATCAACCTGATc                                            >  1:2859551/1‑100 (MQ=255)

                                                       aTGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTg                                         <  1:3435306/100‑1 (MQ=255)

                                                         gCCACGACGTTTTCCATCGACCAACCTTGCGGCTCAACCCCTTTCGTCAACCGTTTACCTTTGCTGTTACCGCCGCGTGCAACATCAACCTCATCGtcct                                       >  2:1474671/1‑97 (MQ=255)

                                                         gCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGcc                                       >  1:3492789/1‑100 (MQ=255)

                                                         gCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGcc                                       >  1:2719115/1‑100 (MQ=255)

                                                         gCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGcc                                       >  1:3273566/1‑100 (MQ=255)

                                                         gCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGcc                                       >  1:2713213/1‑100 (MQ=255)

                                                         gCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGcc                                       <  1:1549780/100‑1 (MQ=255)

                                                          ccACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCa                                      <  2:1953399/100‑1 (MQ=255)

                                                          ccACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCa                                      >  1:3189915/1‑100 (MQ=255)

                                                           cACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAg                                     <  1:3734431/100‑1 (MQ=255)

                                                            acgacgTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAgg                                    <  1:695459/100‑1 (MQ=255)

                                                            acgacgTTTTCCATCGACCAACCTTGCGCCTCAACCCATTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAgg                                    <  2:1607603/100‑1 (MQ=255)

                                                              gacgTTTTCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAAAGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGAc                                  <  2:241531/100‑1 (MQ=255)

                                                                   tttCCATTGACCAGCCTTGGGCCTCGACCCCTTCCGTCAAGAGTTTATGTTGGCTGTTGGCGCCGCGTGCAATTTCAACCTGATCGTGCCAGGATCATTc                             <  2:754609/100‑1 (MQ=255)

                                                                   tttCCATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTc                             <  1:1462385/100‑1 (MQ=255)

                                                                      ccATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTcaca                          >  2:3217894/1‑100 (MQ=255)

                                                                       cATCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCacac                         >  1:2007211/1‑100 (MQ=255)

                                                                        aTCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACt                        >  1:3989383/1‑100 (MQ=255)

                                                                         tCGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTc                       >  2:3554800/1‑100 (MQ=255)

                                                                          cGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTcc                      <  2:3265865/100‑1 (MQ=255)

                                                                          cGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTcc                      <  1:4046346/100‑1 (MQ=255)

                                                                          cGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTcc                      <  1:2684087/100‑1 (MQ=255)

                                                                          cGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTcc                      <  2:3450412/100‑1 (MQ=255)

                                                                          cGACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTcc                      >  1:2027475/1‑100 (MQ=255)

                                                                           gACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCa                     >  2:3314656/1‑100 (MQ=255)

                                                                           gACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCa                     >  1:1131856/1‑100 (MQ=255)

                                                                           gACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCa                     >  1:1906762/1‑100 (MQ=255)

                                                                           gACCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCa                     >  1:2395232/1‑100 (MQ=255)

                                                                            aCCAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAg                    <  2:730938/100‑1 (MQ=255)

                                                                              cAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTc                  >  1:3162840/1‑100 (MQ=255)

                                                                              cAACCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTc                  >  1:3162390/1‑100 (MQ=255)

                                                                              cAACCTAGCGCCTCATCCCCGTACGTCACACGTTTCCCTTTGCGGTTGCCGCCGCGTCCAATATCAACCTCATCGTGCCAGGACCATTCACACTCCAGTc                  <  2:883504/100‑1 (MQ=255)

                                                                                aCCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTccc                >  2:1208012/1‑100 (MQ=255)

                                                                                aCCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTccc                <  1:3632712/100‑1 (MQ=255)

                                                                                aCCTTGCGCCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTccc                >  1:2458208/1‑100 (MQ=255)

                                                                                   ttGCGCCTCAACCCATTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGt             <  2:2063901/100‑1 (MQ=255)

                                                                                      cgcCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCa          <  1:3367162/100‑1 (MQ=255)

                                                                                       gcCTCAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCAt         >  1:3792851/1‑100 (MQ=255)

                                                                                        ccTCACCCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCATg        <  1:3863331/100‑1 (MQ=255)

                                                                                        ccTCAACCCATTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCATg        >  2:2515941/1‑100 (MQ=255)

                                                                                           cAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCATGTTc     <  2:243208/100‑1 (MQ=255)

                                                                                           cAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCATGTTc     <  1:2597569/100‑1 (MQ=255)

                                                                                           cAACCCCTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCATGTTc     <  2:3852483/100‑1 (MQ=255)

                                                                                            aaCCCCTTTCGTCAAACGTCTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCATGTTCg    <  2:3526677/100‑1 (MQ=255)

                                                                                              ccccTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCATGTTCGAc  <  1:3891827/100‑1 (MQ=255)

                                                                                              ccccTTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCATGTTCGAc  <  2:981315/100‑1 (MQ=255)

GCCACGCCTGTACCAGCGGCTTCCAGCATACTGATATCATTAAAGTTATCGCCGAATGCCACGACGTTTTCCATCGACCAACCTTGCGCCTCAACCCATTTCGTCAAACGTTTACCTTTGCTGTTGCCGCCGCGTGCAATATCAACCTGATCGTGCCAGGACCATTCACACTCCAGTCCCAGTTCATGTTCGAC  >  NC_000913/797716‑797909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A