Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F422 I53 R1	229	158.0	8090706	91.1%	7370633	100.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,617,428	A→C	K134T (AAG→ACG)	ydeA →	arabinose efflux transporter, arabinose‑inducible

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,617,428	0	A	C	89.5%	319.9 / 18.9	115	K134T (AAG→ACG)	ydeA	arabinose efflux transporter, arabinose‑inducible
Reads supporting (aligned to +/- strand): ref base A (8/4); new base C (50/52); total (58/57)
Fisher's exact test for biased strand distribution p-value = 3.62e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 118 total aligned reads displayed.

CCGTTCTGGTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGAAGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTATTTCGGTT  >  NC_000913/1617332‑1617523

ccGTTCTGGTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGAcgcg                                                                                              >  1:1876735/1‑100 (MQ=255)

ccGTTCTGGTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGAcgcg                                                                                              <  2:2680690/100‑1 (MQ=255)

  gTTCTGGTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAg                                                                                            >  1:3976513/1‑100 (MQ=255)

  gTTCTGGTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGAAGCGAg                                                                                            >  1:2670160/1‑100 (MQ=255)

    tCTGGTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGAAGCGAGca                                                                                          >  2:1414399/1‑100 (MQ=255)

     cTGGTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGAAGCGAGcac                                                                                         <  1:1439667/100‑1 (MQ=255)

      tGGTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGcaca                                                                                        <  1:1277370/100‑1 (MQ=255)

       ggTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAg                                                                                       >  1:1143474/1‑100 (MQ=255)

       ggTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAg                                                                                       >  1:2300251/1‑100 (MQ=255)

       ggTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAg                                                                                       >  1:1775776/1‑100 (MQ=255)

       ggTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAg                                                                                       >  1:1143260/1‑100 (MQ=255)

        gTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTTTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAgg                                                                                      <  2:2073868/100‑1 (MQ=255)

        gTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAgg                                                                                      <  1:2427977/100‑1 (MQ=255)

         tGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGc                                                                                     >  1:1946241/1‑100 (MQ=255)

         tGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGc                                                                                     <  2:496709/100‑1 (MQ=255)

          gATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCa                                                                                    <  1:665922/100‑1 (MQ=255)

             cAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGAAGCGAGCACAGGCATTg                                                                                 <  1:1729632/100‑1 (MQ=255)

              aGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGa                                                                                <  1:3964343/100‑1 (MQ=255)

               gTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGan                                                                               <  1:3264349/100‑2 (MQ=255)

               gTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAg                                                                               >  2:3413688/1‑100 (MQ=255)

               gTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAg                                                                               >  2:3480867/1‑100 (MQ=255)

               gTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAg                                                                               <  1:893612/100‑1 (MQ=255)

               gTCGCATTGGTGTGGCTTTGGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAg                                                                               <  2:1107963/100‑1 (MQ=255)

                 cGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGtt                                                                             <  2:2230281/100‑1 (MQ=255)

                  gCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGttt                                                                            >  2:771835/1‑100 (MQ=255)

                  gCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGttt                                                                            >  1:2965833/1‑100 (MQ=255)

                   cATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTa                                                                           <  1:2501218/100‑1 (MQ=255)

                   cATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTa                                                                           >  1:3344700/1‑100 (MQ=255)

                      tGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAAtt                                                                        <  2:857016/100‑1 (MQ=255)

                       ggTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTg                                                                       >  2:2801826/1‑100 (MQ=255)

                       ggTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTg                                                                       <  1:1312336/100‑1 (MQ=255)

                        gtgtGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGc                                                                      >  1:2579439/1‑100 (MQ=255)

                          gtgGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCa                                                                    >  1:1243952/1‑100 (MQ=255)

                          gtgGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGAAGCGAGCACAGGCATTGAGTTTAATTGCCa                                                                    >  1:2859765/1‑100 (MQ=255)

                           tgGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCAc                                                                   >  1:2095840/1‑100 (MQ=255)

                            ggCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCAcc                                                                  >  1:3197236/1‑100 (MQ=255)

                            ggCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCAcc                                                                  >  2:1232150/1‑100 (MQ=255)

                            ggCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCAcc                                                                  >  2:364173/1‑100 (MQ=255)

                            ggCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCAcc                                                                  >  1:2812664/1‑100 (MQ=255)

                             gCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCg                                                                 >  1:3569494/1‑100 (MQ=255)

                               ttttGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGt                                                               <  1:2194591/100‑1 (MQ=255)

                                  tGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGGACAGGCATTGAGTTTAAGTGCCACCGGTACa                                                            >  2:3130495/1‑100 (MQ=255)

                                   gCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAg                                                           <  2:3597232/100‑1 (MQ=255)

                                       aTGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCCCt                                                       >  2:1406306/1‑100 (MQ=255)

                                       aTGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACt                                                       >  1:2627608/1‑100 (MQ=255)

                                       aTGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACt                                                       <  2:309600/100‑1 (MQ=255)

                                       aTGCGATTTTCTGGTCAATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACt                                                       >  2:3872648/1‑100 (MQ=255)

                                           gATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCg                                                   >  2:3922291/1‑100 (MQ=255)

                                           gATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCg                                                   <  2:2187065/100‑1 (MQ=255)

                                            aTTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGAAGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGa                                                  >  2:2027460/1‑100 (MQ=255)

                                             ttttCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGAt                                                 <  2:2645857/100‑1 (MQ=255)

                                              ttttTGGTCGATTACGGCGGCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATg                                                <  2:3713764/100‑1 (MQ=255)

                                                tCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGt                                              <  1:3733662/100‑1 (MQ=255)

                                                tCTGGTCGATTACGGCGTCGCTGGCGATCCGGATGGTGCGGGCCGGGAAGCGAGTGCAGGCATTGAGTTGAATTGCCATCGGTACGGTGGTGGCGAGGGt                                              >  2:1182085/1‑100 (MQ=255)

                                                   ggTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCtt                                           >  2:1374540/1‑100 (MQ=255)

                                                   ggTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCtt                                           >  2:1374955/1‑100 (MQ=255)

                                                    gTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTa                                          <  1:51534/100‑1 (MQ=255)

                                                     tCGATTACGGCGTCTCTGGCGATCCGTATAGCTCCGGCCGGGACGCGAGCACCGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAg                                         >  2:3957910/1‑100 (MQ=255)

                                                      cGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAgg                                        <  2:280475/100‑1 (MQ=255)

                                                      cGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAgg                                        <  1:557661/100‑1 (MQ=255)

                                                       gATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGt                                       <  1:456246/100‑1 (MQ=255)

                                                       gATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGt                                       >  2:2479827/1‑100 (MQ=255)

                                                         ttACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGttt                                     >  1:2387930/1‑100 (MQ=255)

                                                          tACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTa                                    <  2:2052288/100‑1 (MQ=255)

                                                           aCGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTAc                                   <  2:3566353/100‑1 (MQ=255)

                                                            cGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTAcc                                  <  1:2333164/100‑1 (MQ=255)

                                                            cGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTAcc                                  <  2:824264/100‑1 (MQ=255)

                                                            cGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTAcc                                  <  1:2116342/100‑1 (MQ=255)

                                                              gCGTCTCTGGCGATCCGGATGGCTCCGGCCGGGACGCGAGCACAGCCATTGAGTTTAATTGCCCCCGGTACAGCACTGGCGATGGTCTTAGGTTTACctc                                <  2:3755459/100‑1 (MQ=255)

                                                               tctctcTGGCGATCCGTATGGCGCCGGCTGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACctct                               <  1:3711463/98‑1 (MQ=255)

                                                                gTCTCTGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCtctc                              >  1:1336628/1‑100 (MQ=255)

                                                                  ctctGGCGATCCGTATGGCTCCGGCCGGGAGGTGCGGACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCgg                            <  2:3251360/100‑1 (MQ=255)

                                                                  ctctGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACctctaga                            >  2:3632501/1‑97 (MQ=255)

                                                                  ctctGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCgg                            >  1:372299/1‑100 (MQ=255)

                                                                   tctGGCGATCCGTATGGCTCCGTCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGTTTTACCTCTCggg                           <  2:2848238/100‑1 (MQ=255)

                                                                    ctGGCGATCCGTATGGCTCCGGCCGTGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGgc                          <  2:3330425/100‑1 (MQ=255)

                                                                    ctGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGgc                          >  1:473787/1‑100 (MQ=255)

                                                                    ctGGCGATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGgc                          >  2:3414091/1‑100 (MQ=255)

                                                                     tGGCGATCCGTATGGCTCCGGCCGGGAAGCGAGCACAGGCATTGAGTTTAATTGCCACCGTTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGgcg                         <  2:3069146/100‑1 (MQ=255)

                                                                         gATCCGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCAtt                     <  1:222379/100‑1 (MQ=255)

                                                                             cGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTgg                 <  2:2032010/100‑1 (MQ=255)

                                                                             cGTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTgg                 >  1:976904/1‑100 (MQ=255)

                                                                              gTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTTCCTCTCGGGCGCATTGTggg                <  1:3180620/100‑1 (MQ=255)

                                                                              gTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTggg                <  1:1561947/100‑1 (MQ=255)

                                                                              gTATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTggg                >  1:295376/1‑100 (MQ=255)

                                                                               tATGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGc               >  1:3106832/1‑100 (MQ=255)

                                                                                aTGGCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGcc              >  1:148391/1‑100 (MQ=255)

                                                                                 tGGCTCCGGTCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCa             >  2:494513/1‑100 (MQ=255)

                                                                                  ggCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAg            >  1:1579266/1‑100 (MQ=255)

                                                                                   gCTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGt           >  2:1911620/1‑100 (MQ=255)

                                                                                   gCTCCGGCCGGGAAGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGt           >  1:2464977/1‑100 (MQ=255)

                                                                                    cTCCGGCCGGGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTa          >  1:155235/1‑100 (MQ=255)

                                                                                       cggccggGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTAttt       >  2:3955388/1‑100 (MQ=255)

                                                                                        ggccggGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTATTTc      <  1:1801200/100‑1 (MQ=255)

                                                                                        ggccggGAAGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTATTTc      >  2:1140675/1‑100 (MQ=255)

                                                                                         gccggGACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTATTTCg     <  2:2513284/100‑1 (MQ=255)

                                                                                          ccggGACGCGAGCACAGGCATTGAGTTTAATTAGCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTATTTCgg    <  2:2539155/100‑1 (MQ=255)

                                                                                           cggGACGCGAGCACAGCCATTGAGTTTAATTGCCCCCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTATTTCGGt   <  2:1395750/100‑1 (MQ=255)

                                                                                            gggACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACGGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTATTTCGGtt  <  2:1679404/100‑1 (MQ=255)

                                                                                            gggACGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTATTTCGGtt  <  1:1423836/100‑1 (MQ=255)

CCGTTCTGGTGATCAGTCGCATTGGTGTGGCTTTTGCACATGCGATTTTCTGGTCGATTACGGCGTCTCTGGCGATCCGTATGGCTCCGGCCGGGAAGCGAGCACAGGCATTGAGTTTAATTGCCACCGGTACAGCACTGGCGATGGTCTTAGGTTTACCTCTCGGGCGCATTGTGGGCCAGTATTTCGGTT  >  NC_000913/1617332‑1617523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A