Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I53 R1
|
229 |
158.0 |
8090706 |
91.1% |
7370633 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,464,914 |
T→G |
I423L (ATC→CTC) |
treB ← |
trehalose‑specific PTS enzyme: IIB and IIC component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,464,914 | 0 | T | G | 93.9%
| 502.9
/ 11.6
| 163 | I423L (ATC→CTC) | treB | trehalose‑specific PTS enzyme: IIB and IIC component |
| Reads supporting (aligned to +/- strand): ref base T (5/5); new base G (72/81); total (77/86) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 165 total aligned reads displayed.
GTACAATCGGGATGATGATGGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGATGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATATTTCAGGTTGAT > NC_000913/4464815‑4465010
|
gTACAATCGGGATGATGATGGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAt < 1:1415088/100‑1 (MQ=255)
aCAATCGGGATGATGATGGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGc < 1:1756884/100‑1 (MQ=255)
cAATCGGGATGATGATGGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGcc > 1:2867492/1‑100 (MQ=255)
aTCGGGATGATGATGGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCAt > 2:1443934/1‑100 (MQ=255)
aTCGGGATGATGATGGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCAt > 2:1763393/1‑100 (MQ=255)
cGGGATGATGATGGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTc > 1:3489482/1‑100 (MQ=255)
gggATGATGATGGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCg < 2:1785761/100‑1 (MQ=255)
ggATGATGATGGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGc < 1:3524954/100‑1 (MQ=255)
tgatggtgGCGGTAGCCACTGCCAGCGCAAACAGCTGCCAGTAGCTCGGTTGTATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCGAt < 2:3997489/100‑1 (MQ=255)
gatgatgTCGATAGCCACTGCCAGCGCAAACAGCTGCCAGTAGCGCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATa < 1:3744092/100‑1 (MQ=255)
atgatgGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATaa > 2:176414/1‑100 (MQ=255)
tgatgGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAAc < 2:1877024/100‑1 (MQ=255)
gatgGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACg > 2:213321/1‑100 (MQ=255)
gatgGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACg > 2:2808608/1‑100 (MQ=255)
tgGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGcc > 2:3272703/1‑100 (MQ=255)
ggCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCg > 1:2082348/1‑100 (MQ=255)
ggCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCg < 2:3971014/100‑1 (MQ=255)
gggATAGCCGTTGCCTGCGCAATCACCTTCCCGTCGCTCGGTGGGATCGAGAGGATTCCCGGCAGGCCGCCTCGGCCGAGGCCGCTCGCCGTAACTCCGt < 2:2943785/98‑1 (MQ=255)
gCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGc < 1:3306136/100‑1 (MQ=255)
gCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGc > 1:843267/1‑100 (MQ=255)
gCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGc > 2:352516/1‑100 (MQ=255)
gCCAATGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCACCATAACGCCGTTCAGGc > 2:3386789/1‑100 (MQ=255)
aTTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGc > 2:215944/1‑100 (MQ=255)
aTTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGc < 1:898971/100‑1 (MQ=255)
ttGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCa < 2:268926/100‑1 (MQ=255)
tGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGACTCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATCACGCCGTTCAGGCCGCAt > 2:3696318/1‑100 (MQ=255)
ccAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAg > 1:3161557/1‑100 (MQ=255)
ccAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAg < 1:3407230/100‑1 (MQ=255)
cAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGc < 1:4032270/100‑1 (MQ=255)
cAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGc < 1:323414/100‑1 (MQ=255)
cAGCGCAAACACCCGCCAGTAGATCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGATGCCATTCGCCATAACGCCGTTCAGGCCGCATAGc < 1:393445/100‑1 (MQ=255)
cgcAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAAt < 1:1397227/100‑1 (MQ=255)
gcAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGATGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATc < 1:3092734/100‑1 (MQ=255)
gcAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATc < 2:748642/100‑1 (MQ=255)
cAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGATGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATcc > 2:2525377/1‑100 (MQ=255)
cAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATcc > 1:135472/1‑100 (MQ=255)
aatacatCTGCCAGTAGCTCGGTTGAAACAAGATAATTCCCGGCAATCCTGCTACGCCGATGCCATTCGGCATATCGTCGTGTAGGCTGCCTATCAATca > 2:3474265/4‑99 (MQ=255)
aaCACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTGCGCCGCGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTg < 2:3259029/100‑1 (MQ=255)
aaCACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTg < 2:2187879/100‑1 (MQ=255)
acacCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGc < 1:68143/100‑1 (MQ=255)
acacCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGc > 2:1254359/1‑100 (MQ=255)
cacCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGATGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGcc < 1:3656036/100‑1 (MQ=255)
cacCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGcc < 2:895360/100‑1 (MQ=255)
acCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGcca < 2:1631141/100‑1 (MQ=255)
ccTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGccag < 1:3861348/100‑1 (MQ=255)
ccTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGccag > 1:2797344/1‑100 (MQ=255)
tGCCAGTAGCTCGGTTGCATCGAGCGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGccagac < 2:2141085/100‑1 (MQ=255)
gCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGccagacc < 1:3456450/100‑1 (MQ=255)
ccAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGccagacca < 1:1506873/100‑1 (MQ=255)
aGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGccagaccaga > 1:371804/1‑100 (MQ=255)
aGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGccagaccaga > 1:659716/1‑100 (MQ=255)
aGTAGCTCGGTTGAATCGAGAGAATCCCCGGCAGGCCTCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGccagaccaga < 1:3800168/100‑1 (MQ=255)
tAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAAc < 1:3682345/100‑1 (MQ=255)
tAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAAc < 2:2430568/100‑1 (MQ=255)
tAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAAc < 1:253195/100‑1 (MQ=255)
tAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAAc < 1:161888/100‑1 (MQ=255)
tAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAAc < 1:1514899/100‑1 (MQ=255)
aGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAAcc < 2:785397/100‑1 (MQ=255)
gCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCCTAGCAACCCTGCCAGACCAGAACCa > 2:1277628/1‑100 (MQ=255)
gCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCa < 1:1927618/100‑1 (MQ=255)
cGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAatc > 2:1059856/1‑100 (MQ=255)
gggtGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAatca < 1:963025/97‑1 (MQ=255)
gTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAatcat > 1:2372421/1‑100 (MQ=255)
ttGAATCGAGAGCATTCCCGGCAGGCCGCCGACGCCGAGGCCATTCGCTATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAatcatc < 1:3887001/100‑1 (MQ=255)
tGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCACATAGCAATCCTGCCAGACCAGAACCAATCATcg < 1:763146/100‑1 (MQ=255)
aaTCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATcgcg > 2:3579395/1‑100 (MQ=255)
aTCGAGAGAATTCCCGGCAGGCCGCCTACGCCGATGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCgcgc > 1:3958276/1‑100 (MQ=255)
tCGAGAGAATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGca < 1:3947143/100‑1 (MQ=255)
gagagaATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGcaca > 2:3775500/1‑100 (MQ=255)
agagaATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAg < 1:2547409/100‑1 (MQ=255)
gagaATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGc < 2:3840960/100‑1 (MQ=255)
gaATTCCCGGCAGGCCGCCTACGCCGAGGCCATTCACCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCAt > 2:157571/1‑100 (MQ=255)
atccccGGCAGGCCGCCTACCCCGAGGCCAGTCACCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCg < 2:1640064/97‑1 (MQ=255)
ttCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCgg < 1:1248973/100‑1 (MQ=255)
ttCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCgg > 1:2322467/1‑100 (MQ=255)
ttCCCGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCgg < 2:1988436/100‑1 (MQ=255)
cccGGCAGGCCGCCTACGCCGATGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGa > 2:1044136/1‑100 (MQ=255)
cccGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGa > 1:2605857/1‑100 (MQ=255)
cccGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGa > 2:2320795/1‑100 (MQ=255)
cccGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGa < 1:1995409/100‑1 (MQ=255)
cGGCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAg > 2:544068/1‑100 (MQ=255)
ggCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGc < 2:3771662/100‑1 (MQ=255)
ggCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGc < 1:3126719/100‑1 (MQ=255)
ggCAGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGc < 2:3368293/100‑1 (MQ=255)
ggCAGGCCGCCGACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCGGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGc < 2:1819695/100‑1 (MQ=255)
aGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGat > 2:2354977/1‑100 (MQ=255)
aGGCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGat < 1:1231564/100‑1 (MQ=255)
aGGCCGCCTACACCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGat > 1:1594870/1‑100 (MQ=255)
ggCCGCCTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGata > 1:3337707/1‑100 (MQ=255)
ccgccTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATAtt < 2:3559494/100‑1 (MQ=255)
ccgccTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATAtt > 1:2637937/1‑100 (MQ=255)
ccgccTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATAtt > 2:2864171/1‑100 (MQ=255)
ccgccTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATAtt < 2:2597708/100‑1 (MQ=255)
ccgccTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATAtt > 1:225784/1‑100 (MQ=255)
ccTACGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATATTTCa < 1:2038221/100‑1 (MQ=255)
aCGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATATTTCAGGt < 2:2497443/100‑1 (MQ=255)
aCGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATATTTCAGGt < 2:2339888/100‑1 (MQ=255)
cGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATATTTCAGGtt < 1:2270829/100‑1 (MQ=255)
cGCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATATTTCAGGtt > 2:2207499/1‑100 (MQ=255)
gCCGAGGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATATTTCAGGTTg < 2:2508046/100‑1 (MQ=255)
|
GTACAATCGGGATGATGATGGCGATAGCCATTGCCAGCGCAAACACCTGCCAGTAGCTCGGTTGAATCGAGAGAATTCCCGGCAGGCCGCCTACGCCGATGCCATTCGCCATAACGCCGTTCAGGCCGCATAGCAATCCTGCCAGACCAGAACCAATCATCGCGCACAGCATCGGGAAGCGATATTTCAGGTTGAT > NC_000913/4464815‑4465010
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
