Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F412 I3 R1 53 201.3 10250884 92.1% 9441064 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 342,567 +G intergenic (+60/‑317) yahJ → / → yahK putative metallo‑dependent hydrolase domain deaminase/broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913342,5631.G98.1% 541.6 / 2.0 157intergenic (+56/‑321)yahJ/yahKputative metallo‑dependent hydrolase domain deaminase/broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing
Reads supporting (aligned to +/- strand):  ref base . (3/0);  new base G (67/86);  total (70/87)
Fisher's exact test for biased strand distribution p-value = 8.82e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 185 total aligned reads displayed.

CGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑GGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGATAACTATTTGTCTACG  >  NC_000913/342464‑342657
                                                                                                     |                                                                                               
cGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑t                                                                                                  <  1:3950772/100‑1 (MQ=255)
 gTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑g                                                                                                <  1:1003118/100‑1 (MQ=255)
  ttCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑gg                                                                                               <  2:5001037/100‑1 (MQ=255)
  ttCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑gg                                                                                               <  1:3066051/100‑1 (MQ=255)
   tCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg                                                                                              >  1:482493/1‑100 (MQ=255)
   tCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg                                                                                              <  1:3145667/100‑1 (MQ=255)
   tCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg                                                                                              >  2:3293280/1‑100 (MQ=255)
    ccATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg‑g                                                                                            >  1:54419/1‑100 (MQ=255)
     cATAACGGGCAACTGGGGTGGGGGAGTGGGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg‑gg                                                                                           <  2:2020824/100‑2 (MQ=255)
     cATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg‑gg                                                                                           <  1:790344/100‑2 (MQ=255)
     cATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg‑gg                                                                                           >  1:340804/1‑99 (MQ=255)
      aTAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg‑ggc                                                                                          <  2:822003/100‑3 (MQ=255)
      aTAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg‑ggc                                                                                          <  2:336552/100‑3 (MQ=255)
       tAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg‑ggca                                                                                         >  1:2398519/1‑97 (MQ=255)
         aaGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg‑ggcaat                                                                                       <  2:2637437/100‑6 (MQ=255)
         aaGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg‑ggcaat                                                                                       >  1:2162118/1‑95 (MQ=255)
         aaGAGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑ggg‑ggcaat                                                                                       >  2:4664954/1‑95 (MQ=255)
          aGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATc                                                                                       <  1:249176/100‑1 (MQ=255)
          aGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATc                                                                                       <  2:2324041/100‑1 (MQ=255)
           gggCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCt                                                                                      >  2:1809546/1‑100 (MQ=255)
            ggCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTg                                                                                     >  2:1529127/1‑100 (MQ=255)
              cAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGaa                                                                                   >  2:2655708/1‑100 (MQ=255)
              cAACTGGGGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGaa                                                                                   <  2:3096020/100‑1 (MQ=255)
                aCTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAata                                                                                 <  1:2584904/100‑1 (MQ=255)
                aCTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAata                                                                                 <  2:211464/100‑1 (MQ=255)
                  tGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATg                                                                               <  1:1514990/100‑1 (MQ=255)
                  tGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATg                                                                               <  2:915283/100‑1 (MQ=255)
                   ggTGTGGGGGAGTGTGGGAGGGTGATGCGCATTTGAAACGCCTGCAACGGTGGATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGa                                                                              >  2:1279309/1‑100 (MQ=255)
                    gtgtGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAg                                                                             >  1:2869416/1‑100 (MQ=255)
                    gggtgGGGGGGTGTGGCAGGGTGATGCGCATTTGAAACGCGTGCAACGGTGAATAGTAAGAGGTTTAAGCCCCCGGGAG‑TGGGG‑GCAATCTGAGTATGAg                                                                             <  2:2509047/98‑1 (MQ=255)
                      gtgGGGGCGTGTGGCAGCTTGATGCGCATTTGAAACGCCTGCAATGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAgtg                                                                           <  1:4740784/100‑1 (MQ=255)
                      gtgGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAgtg                                                                           <  1:121079/100‑1 (MQ=255)
                      gtgGGGGAGCGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAgtg                                                                           <  2:1548761/100‑1 (MQ=255)
                        ggggggGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAgtgtg                                                                         >  2:186692/1‑100 (MQ=255)
                         ggggggTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAgtgtgt                                                                        <  2:4872095/100‑1 (MQ=255)
                          gggAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTc                                                                       >  1:5123084/1‑100 (MQ=255)
                           ggAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCg                                                                      <  2:4281119/100‑1 (MQ=255)
                           ggAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCg                                                                      >  1:1163174/1‑100 (MQ=255)
                            gAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGCAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCgg                                                                     >  2:2295248/1‑100 (MQ=255)
                                gtgGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGa                                                                 >  2:3619443/1‑100 (MQ=255)
                                gtgGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGa                                                                 >  1:1077033/1‑100 (MQ=255)
                                 tgGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGaa                                                                >  1:2785751/1‑100 (MQ=255)
                                  ggCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGaaa                                                               >  2:875187/1‑100 (MQ=255)
                                     aGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATgg                                                            <  1:3761781/100‑1 (MQ=255)
                                      ggTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGa                                                           >  1:848834/1‑100 (MQ=255)
                                       gTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGAc                                                          <  1:4473212/100‑1 (MQ=255)
                                       gTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGAc                                                          <  2:4239438/100‑1 (MQ=255)
                                         tGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACAt                                                        <  2:3401202/100‑1 (MQ=255)
                                             gcgcATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATc                                                    >  1:302660/1‑100 (MQ=255)
                                               gcATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCtt                                                  >  2:2404958/1‑100 (MQ=255)
                                                cATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAGCG‑GGG‑GCAATATGAATATGAGTGTGTCGGCAGAAATGGACATTATCttt                                                 >  2:4163955/1‑100 (MQ=255)
                                                cATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTagatcg                                                 >  2:3051567/1‑95 (MQ=255)
                                                cATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCttt                                                 >  1:3661429/1‑100 (MQ=255)
                                                cATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCttt                                                 >  1:299366/1‑100 (MQ=255)
                                                 aTTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTg                                                <  1:4377329/100‑1 (MQ=255)
                                                   ttGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAg                                              <  2:3742545/100‑1 (MQ=255)
                                                   ttGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAg                                              <  1:2342245/100‑1 (MQ=255)
                                                   ttGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAg                                              <  2:3571067/100‑1 (MQ=255)
                                                   ttGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAg                                              >  1:3610550/1‑100 (MQ=255)
                                                   ttGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAg                                              <  1:3230205/100‑1 (MQ=255)
                                                    tGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAgg                                             >  2:2616960/1‑100 (MQ=255)
                                                       aaCGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAat                                          >  2:61223/1‑100 (MQ=255)
                                                         cGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAatat                                        <  2:2427184/100‑1 (MQ=255)
                                                           ccTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGc                                      >  2:4343735/1‑100 (MQ=255)
                                                           ccTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGc                                      <  2:2752222/100‑1 (MQ=255)
                                                           ccTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGAGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGc                                      <  1:2294904/100‑1 (MQ=255)
                                                            cggCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATTTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGcc                                     <  2:2941948/98‑1 (MQ=255)
                                                            cTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGcc                                     <  1:2433445/100‑1 (MQ=255)
                                                              gCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCt                                   <  2:2837330/100‑1 (MQ=255)
                                                              gCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCt                                   <  1:1744941/100‑1 (MQ=255)
                                                               cAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCtt                                  <  1:629605/100‑1 (MQ=255)
                                                               cAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATACGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCtt                                  >  2:4125343/1‑100 (MQ=255)
                                                               cAACGGTGAATAGTAAGAGATGTAAGCCGCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACGTTATCTTTGAGGAATATGGCCtt                                  <  2:45618/100‑1 (MQ=255)
                                                                  cGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTAtt                               <  2:1314140/100‑1 (MQ=255)
                                                                   ggTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTg                              <  1:5009731/100‑1 (MQ=255)
                                                                    gTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGa                             >  1:1538567/1‑100 (MQ=255)
                                                                    gTGAATAGTAAGAGATCTAAGCCCCAGGGAG‑G‑GGGTGCAAGCTAAATATGAGTGTGTCGGCACAAATGGACACTATCGCCGCGGAATATGCCCTCATTGa                             >  2:397858/1‑100 (MQ=255)
                                                                     tGAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGAc                            <  2:3642549/100‑1 (MQ=255)
                                                                      gAATAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACg                           >  1:4130196/1‑100 (MQ=255)
                                                                      caaTATTAAGAGAGTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACg                           <  2:4735032/99‑1 (MQ=255)
                                                                       aaTAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGt                          >  1:2708215/1‑100 (MQ=255)
                                                                       aaTAGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCAGCAAAAATGAACATTACCTTTGAGGAATATGCCCTTATTGACGt                          >  2:4847429/1‑100 (MQ=255)
                                                                         tAGTACGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTtg                        <  1:436215/100‑1 (MQ=255)
                                                                          aGTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTtgt                       <  1:1764951/100‑1 (MQ=255)
                                                                           gTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTtgtg                      >  1:3862845/1‑100 (MQ=255)
                                                                           gTAAGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTtgtg                      >  1:1800099/1‑100 (MQ=255)
                                                                             aaGAGATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTa                    <  1:3642458/100‑1 (MQ=255)
                                                                              agagATTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAg                   >  1:2097613/1‑100 (MQ=255)
                                                                              agagATTTAAGCCCAAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGAAGAAATGGACATTATATTTGAGGAATATGACATTATTGACGTTGTGTAg                   >  1:4028298/1‑100 (MQ=255)
                                                                               gagaTTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGa                  >  2:1790301/1‑100 (MQ=255)
                                                                                agaTTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGAt                 <  1:350651/100‑1 (MQ=255)
                                                                                 gaTTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGATa                <  2:730791/100‑1 (MQ=255)
                                                                                  aTTTAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGATaa               >  1:3354635/1‑100 (MQ=255)
                                                                                    ttAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGATAACt             >  1:691659/1‑100 (MQ=255)
                                                                                     tAAGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGATAACTa            <  1:947298/100‑1 (MQ=255)
                                                                                       aGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGATAACTAtt          <  2:3039952/100‑1 (MQ=255)
                                                                                       aGCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGATAACTAtt          >  2:4958528/1‑100 (MQ=255)
                                                                                        gCCCCAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGATAACTAttt         >  1:458001/1‑100 (MQ=255)
                                                                                           ccAGGGAG‑TGGGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGATAACTATTTGTc      >  1:3296278/1‑100 (MQ=255)
                                                                                           ccAGGGAG‑TGGGG‑GCAATCTCAATATGCGTGTGCCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGCTAACTATTTGTc      <  2:3839289/100‑1 (MQ=255)
                                                                                                     |                                                                                               
CGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTTAAGCCCCAGGGAG‑T‑GGG‑GCAATCTGAATATGAGTGTGTCGGCAGAAATGGACATTATCTTTGAGGAATATGCCCTTATTGACGTTGTGTAGATAACTATTTGTCTACG  >  NC_000913/342464‑342657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A