Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F412 I3 R1
|
53 |
201.3 |
10250884 |
92.1% |
9441064 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
723,678 |
A→G |
V246A (GTG→GCG) |
kdpD ← |
fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 723,678 | 0 | A | G | 98.9%
| 609.6
/ ‑2.9
| 177 | V246A (GTG→GCG) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (82/93); total (84/93) |
| Fisher's exact test for biased strand distribution p-value = 2.24e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.61e-01 |
Only 100 of 180 total aligned reads displayed.
ACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGAT > NC_000913/723581‑723774
|
cccAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCtt > 2:4880465/1‑100 (MQ=255)
ccAGCCGTTACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCttt < 2:3394674/100‑1 (MQ=255)
cAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTtc > 2:2976393/1‑100 (MQ=255)
cAGCCGTGACGCCAGCCGCGCCGCGGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTtc < 2:1556578/100‑1 (MQ=255)
cAGCCGGGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTtc < 2:3408465/100‑1 (MQ=255)
cAGCCGGGACGCCAGCCGCGCCCCTGCGCAGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTtc < 1:4699041/100‑1 (MQ=255)
gCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCTGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTtctc < 1:4395282/100‑1 (MQ=255)
gCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTtctc > 2:2013296/1‑100 (MQ=255)
gCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTtctc < 2:3224167/100‑1 (MQ=255)
gCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTtctc > 2:3372308/1‑100 (MQ=255)
gCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTtctc > 1:882334/1‑100 (MQ=255)
ccGGGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTctct < 1:1937384/100‑1 (MQ=255)
gTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTc < 1:3373247/100‑1 (MQ=255)
tGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCg < 2:1418786/100‑1 (MQ=255)
tGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCg < 2:1633347/100‑1 (MQ=255)
tGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCg < 1:4873247/100‑1 (MQ=255)
tGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCg < 1:4215810/100‑1 (MQ=255)
tGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCg < 2:4452876/100‑1 (MQ=255)
tGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCg < 2:3201381/100‑1 (MQ=255)
cGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCa > 2:1223552/1‑100 (MQ=255)
ccAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATTCATAAAAGGATCGCGTCGCGCATGTGCCACGCTTTCTCTTCGCCAgg < 1:4609136/100‑1 (MQ=255)
cAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGa > 2:2852241/1‑100 (MQ=255)
cAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGa > 1:576335/1‑100 (MQ=255)
aGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGAt < 1:1719824/100‑1 (MQ=255)
gccgcgccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATg > 2:2771820/1‑100 (MQ=255)
gccgcgccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATg < 2:2712579/100‑1 (MQ=255)
gccgcgccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATg < 1:1364191/100‑1 (MQ=255)
gatctgccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATg < 1:3710965/95‑1 (MQ=255)
ccgcgccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGc < 2:461857/100‑1 (MQ=255)
cgcgccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGcc > 2:2610985/1‑100 (MQ=255)
gccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGccccc > 1:738341/1‑100 (MQ=255)
gccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGccccc < 2:3128915/100‑1 (MQ=255)
ccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCg < 1:2038541/100‑1 (MQ=255)
ccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCg < 2:4512388/100‑1 (MQ=255)
ccgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCg > 2:2121925/1‑100 (MQ=255)
cgcTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGc > 1:2654189/1‑100 (MQ=255)
tGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAg < 2:1854212/100‑1 (MQ=255)
gcgcGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAgg > 2:3832491/1‑100 (MQ=255)
gcgcGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCAGAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAgg < 1:4327479/100‑1 (MQ=255)
tcgGACCAGTTTTTCGCTGCCGGGGTTATGGCCGATGCTTAAAATGATCTCGTCGCGCGTGTTCCACGCTTTCGCTTCGCCAGGAGGCGCCCGCCAggtg > 2:231782/2‑98 (MQ=255)
cgGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGgcgc < 2:3854751/100‑1 (MQ=255)
ccAGTTTTTCGCTGCCGGTGTTATTGCCAATGCATAAAAGGACCGCCTCCCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCAt < 2:26525/100‑1 (MQ=255)
gTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTg < 1:2430257/100‑1 (MQ=255)
ttttCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCt < 1:16003/100‑1 (MQ=255)
ttttCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCt > 2:2827425/1‑100 (MQ=255)
ttttCGCTGCCGGTGTTATAGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCCGGCGCGCATTTGCt > 2:4638881/1‑100 (MQ=255)
tttCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCtc > 2:637418/1‑100 (MQ=255)
ttCGCTGCCGGTGTTATGGCCGCTGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCtca < 2:119618/100‑1 (MQ=255)
ttCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGACGCCCCCGCCAGGCGCGCATTTGCtca > 1:4613716/1‑100 (MQ=255)
cGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCtcatc > 1:3294075/1‑100 (MQ=255)
cttctggTTTTATTGCCGATTCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCaa > 2:4081318/6‑100 (MQ=255)
tGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAAc > 1:888626/1‑100 (MQ=255)
gCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAAcg > 2:1497614/1‑100 (MQ=255)
cGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAAcgcg > 2:2166305/1‑100 (MQ=255)
cGGTGTTATGGCCGATGCATAAAAGGATCGAGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAAcgcg > 2:2482064/1‑100 (MQ=255)
gtgtTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGAt > 1:2884524/1‑100 (MQ=255)
gtTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCg > 2:2667566/1‑100 (MQ=255)
gtTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCg > 1:3793924/1‑100 (MQ=255)
gtTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCg < 2:2406697/100‑1 (MQ=255)
gtTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCg < 1:2226102/100‑1 (MQ=255)
gtTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCg < 1:856978/100‑1 (MQ=255)
ttATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCgn < 1:4167136/100‑2 (MQ=255)
tATGGCCTATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGTCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGc < 2:4722461/100‑1 (MQ=255)
tATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGc > 1:3198786/1‑100 (MQ=255)
tATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGc < 1:3092070/100‑1 (MQ=255)
tATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGc > 2:4143861/1‑100 (MQ=255)
tATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGc < 1:129056/100‑1 (MQ=255)
tATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGc > 1:5081433/1‑100 (MQ=255)
aTGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCa < 1:165210/100‑1 (MQ=255)
aTGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCa < 2:4350655/100‑1 (MQ=255)
aTGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCa < 1:3002093/100‑1 (MQ=255)
tGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAg < 1:3944723/100‑1 (MQ=255)
ggCCGATGCATAAAAGGATCGCGTCTCGCGTGTGCCACGCTTTCTCTTCACCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGt > 2:2195719/1‑100 (MQ=255)
ggCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGt > 2:4560358/1‑100 (MQ=255)
ggCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGt > 1:628489/1‑100 (MQ=255)
gCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTa > 2:1154794/1‑100 (MQ=255)
gCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTa > 2:335077/1‑100 (MQ=255)
aTGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGgc < 1:3041469/100‑1 (MQ=255)
aTGCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGgc < 2:3265832/100‑1 (MQ=255)
gCATAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGgcgc > 1:457027/1‑100 (MQ=255)
aTAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAg > 2:1678251/1‑100 (MQ=255)
tAAAAGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGt > 2:2890665/1‑100 (MQ=255)
aaGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGcc < 2:4256770/100‑1 (MQ=255)
aaGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGcc < 1:1346024/100‑1 (MQ=255)
aaGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGcc < 1:3511280/100‑1 (MQ=255)
aGGATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCa > 1:2690234/1‑100 (MQ=255)
ggATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAg > 1:1741767/1‑100 (MQ=255)
gATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGt > 2:257906/1‑100 (MQ=255)
gATCGCGTCGCGCGTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGt > 2:220205/1‑100 (MQ=255)
cgcgcgTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAg < 1:688364/100‑1 (MQ=255)
gcgcgTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAgg < 1:2528598/100‑1 (MQ=255)
gcgcgTGTGCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAgg > 1:37643/1‑100 (MQ=255)
gtgCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATc > 2:3105653/1‑100 (MQ=255)
tgCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCa > 1:1622943/1‑100 (MQ=255)
gCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCCGTTGCCCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAg > 1:2732453/1‑100 (MQ=255)
gCCACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAg > 2:3634571/1‑100 (MQ=255)
ccACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGa > 2:4214540/1‑100 (MQ=255)
ccACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGa < 1:4752104/100‑1 (MQ=255)
ccACGCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGa < 2:3738759/100‑1 (MQ=255)
cacgCTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGAt > 1:1191223/1‑100 (MQ=255)
|
ACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTTTTTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGAT > NC_000913/723581‑723774
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
