Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F412 I3 R1 53 201.3 10250884 92.1% 9441064 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 833,768 C→T S233S (AGC→AGT)  dinG → ATP‑dependent DNA helicase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913833,7680CT99.4% 560.5 / ‑4.9 166S233S (AGC→AGT) dinGATP‑dependent DNA helicase
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (91/73);  total (93/73)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.06e-01

Only 100 of 174 total aligned reads displayed.

ACTATCGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGCGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTGAGATGAGCGC  >  NC_000913/833671‑833863
                                                                                                 |                                                                                               
actaTCGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAaagtga                                                                                               <  1:2439986/100‑1 (MQ=255)
actaTCGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAaagtga                                                                                               <  1:854313/100‑1 (MQ=255)
  taTCGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAaagtgaag                                                                                             >  1:997422/1‑100 (MQ=255)
   aTCGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAaagtgaagc                                                                                            <  1:4795357/100‑1 (MQ=255)
   aTCGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAaagtgaagc                                                                                            >  1:186846/1‑100 (MQ=255)
   aTCGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAaagtgaagc                                                                                            <  1:1226264/100‑1 (MQ=255)
   aTCGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAaagtgaagc                                                                                            >  1:1157107/1‑100 (MQ=255)
     cGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCgg                                                                                          >  2:3086464/1‑100 (MQ=255)
     cGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCgg                                                                                          <  1:2040187/100‑1 (MQ=255)
     cGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCgg                                                                                          <  1:3986742/100‑1 (MQ=255)
      gTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGt                                                                                         >  1:3187663/1‑100 (MQ=255)
      gTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCGGGTGATGGCGGCGATGGAAAGTGAAGCGGt                                                                                         >  2:3336551/1‑100 (MQ=255)
            gCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGcc                                                                                   <  1:1623454/100‑1 (MQ=255)
            gCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGCTGATGGCGGCGATGGAAAGTGATGCGGTATTGcc                                                                                   <  2:4700787/100‑1 (MQ=255)
             cccGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATTGCGGCGATGGAAAGTGAAGCGGTATTGCCt                                                                                  >  1:236014/1‑100 (MQ=255)
                gTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGAc                                                                               <  2:2471330/100‑1 (MQ=255)
                 ttttttGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGAcc                                                                              <  1:3449573/100‑1 (MQ=255)
                  tttttGTCGCTCGTCGTGAGATTCAAGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGAGGCGATGGAAAGTTAAGCGGTATTGCATAAccc                                                                             <  2:1839827/100‑1 (MQ=255)
                   ttttGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGAcaga                                                                            >  2:1579651/1‑97 (MQ=255)
                   ttttGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCg                                                                            >  2:31263/1‑100 (MQ=255)
                       gTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGaaaa                                                                        >  1:3352892/1‑100 (MQ=255)
                       gTCGCTCGTCGGGAGAGTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGaaaa                                                                        <  1:3754140/100‑1 (MQ=255)
                         cGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAAt                                                                      >  1:511894/1‑100 (MQ=255)
                           cTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAAttt                                                                    <  1:3473520/100‑1 (MQ=255)
                             cgtcgGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTAc                                                                  <  2:2313948/100‑1 (MQ=255)
                             cgtcgGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTAc                                                                  <  1:1604325/100‑1 (MQ=255)
                              gtcgGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTAct                                                                 <  2:2156332/100‑1 (MQ=255)
                                  ggAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTActgctg                                                             >  2:2006225/1‑100 (MQ=255)
                                   gagaTTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACtgctgg                                                            <  2:4095492/100‑1 (MQ=255)
                                   gagaTTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACtgctgg                                                            <  1:4533354/100‑1 (MQ=255)
                                     gaTTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACtgctggtg                                                          >  1:3021101/1‑100 (MQ=255)
                                      aTTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACtgctggtgc                                                         >  2:3559764/1‑100 (MQ=255)
                                      aTTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACtgctggtgc                                                         <  2:437281/100‑1 (MQ=255)
                                      aTTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACtgctggtgc                                                         >  1:3862833/1‑100 (MQ=255)
                                       ttCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACtgctggtgct                                                        <  1:4080569/100‑1 (MQ=255)
                                         cAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACtgctggtgctgg                                                      >  1:3613342/1‑100 (MQ=255)
                                         cAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACtgctggtgctgg                                                      >  2:23414/1‑100 (MQ=255)
                                         cAGGAAGCGGAAGTGATGGTGGCAAACCATCCGCTGGTGACGGCGCCGATGGAAAGTGAAGCGGTATTGCCTAACCCGAAAAATTTACtgctggtgctgg                                                      >  1:4478419/1‑100 (MQ=255)
                                         cAGGAAGCGGAAGTGATGGTGGCAAACCATCCGCTGGTGAAGGCGCCGATGGAAAGTGAAGCGGTATTGCCTCACCCGAAAAATTTACtgctggtgctgg                                                      >  1:4479718/1‑100 (MQ=255)
                                          aGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGa                                                     >  2:3303593/1‑100 (MQ=255)
                                          aGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGa                                                     >  2:2743802/1‑100 (MQ=255)
                                            gAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACg                                                   <  1:3969306/100‑1 (MQ=255)
                                            gAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTACTGGTGCTGGACg                                                   >  2:3975419/1‑100 (MQ=255)
                                              aGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGaa                                                 >  1:741456/1‑100 (MQ=255)
                                                cGGAGGCGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGGGAAGTGGTATTGCCTGACCGGAAAAATTTACTGCTGGTGCTGGACGAAgg                                               >  2:4782987/1‑100 (MQ=255)
                                                cGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAgg                                               >  1:1028564/1‑100 (MQ=255)
                                                cGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAgg                                               >  1:2763948/1‑100 (MQ=255)
                                                cGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAgg                                               >  1:1580015/1‑100 (MQ=255)
                                                 ggAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAACTTTACTGCTGGTGCTGGACGAAGGc                                              >  2:3869396/1‑100 (MQ=255)
                                                  gAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGcc                                             >  1:4651915/1‑100 (MQ=255)
                                                   aaGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCa                                            <  2:3638375/100‑1 (MQ=255)
                                                   aaGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCa                                            <  2:3681025/100‑1 (MQ=255)
                                                      tggtggtggCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCa                                         <  1:489981/100‑1 (MQ=255)
                                                      tggtggtggCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCa                                         >  2:1175529/1‑100 (MQ=255)
                                                       ggtggtggCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGTCCATCAc                                        <  2:4185326/100‑1 (MQ=255)
                                                       ggtggtggCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCAc                                        >  1:501140/1‑100 (MQ=255)
                                                        gtggtggCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCAcc                                       <  1:4358415/100‑1 (MQ=255)
                                                        gtggtggCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCAcc                                       >  2:2159746/1‑100 (MQ=255)
                                                        gtggtggCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCAcc                                       >  1:1872570/1‑100 (MQ=255)
                                                            tggCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCCCCTGcc                                   >  2:2684416/1‑100 (MQ=255)
                                                            tggCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGcc                                   >  2:620076/1‑100 (MQ=255)
                                                             ggCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCg                                  <  2:2964749/100‑1 (MQ=255)
                                                              gCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCgg                                 <  2:1985817/100‑1 (MQ=255)
                                                                aaaCCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGAt                               >  1:3826182/1‑100 (MQ=255)
                                                                 aaCCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGAtg                              <  1:1357823/100‑1 (MQ=255)
                                                                  aCCATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGAtgt                             >  1:1756707/1‑100 (MQ=255)
                                                                   ccATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGAtgtg                            >  2:3750151/1‑100 (MQ=255)
                                                                   ccATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGAtgtg                            <  1:2692390/100‑1 (MQ=255)
                                                                   ccATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGAggtg                            >  2:878902/1‑100 (MQ=255)
                                                                    cATGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTgg                           >  1:1014270/1‑100 (MQ=255)
                                                                     aTGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGgc                          >  1:2903789/1‑100 (MQ=255)
                                                                     aTGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGgc                          >  1:342052/1‑100 (MQ=255)
                                                                     aTGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGgc                          <  1:4759269/100‑1 (MQ=255)
                                                                     aTGCGCTGGTGATGGCGGCGATGGAAAGTGAAGCGGTAGTGCCTGACCCGAAAAATTTACGGCTGGTCCTGGACGACGGCCATCACCTGCCGGATGTCgc                          >  2:4829863/1‑100 (MQ=255)
                                                                      ccggcTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTACTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGgcg                         <  1:2931224/97‑1 (MQ=255)
                                                                       gcgcTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGgcgc                        >  2:4697701/1‑100 (MQ=255)
                                                                        cgcTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGcgcg                       >  1:873554/1‑100 (MQ=255)
                                                                         gcTGGTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCgg                      >  2:2616539/1‑100 (MQ=255)
                                                                             gTGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATg                  <  2:3570528/100‑1 (MQ=255)
                                                                              tGATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATgc                 >  1:4945301/1‑100 (MQ=255)
                                                                              tGATCGCGGCGATGGAAAGTGAAGCGGTATTGTCCGACGCGAAAAGTTTACTACTGGTGCTGGATTATAGAGATCGCCTGTCGGATGTGGCGCGGGAttc                 <  2:4177976/100‑3 (MQ=255)
                                                                               gATGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATgcg                <  2:838909/100‑1 (MQ=255)
                                                                                aTGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATgcgc               <  1:3444300/100‑1 (MQ=255)
                                                                                 tGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCt              <  1:1269481/100‑1 (MQ=255)
                                                                                 tGGCGGCGATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCt              >  1:2552297/1‑100 (MQ=255)
                                                                                   gcggcgATGGAAAGTGAAGCGGTATTGCCTGACCCGAAACATTTACTGCTGGGGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTg            <  2:605029/100‑1 (MQ=255)
                                                                                   gcggcgATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTg            <  2:4580700/100‑1 (MQ=255)
                                                                                    cggcgATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTga           <  2:3457890/100‑1 (MQ=255)
                                                                                     ggcgATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTgag          <  2:2990735/100‑1 (MQ=255)
                                                                                     ggcgATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTgag          <  2:1475756/100‑1 (MQ=255)
                                                                                      gcgATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTgaga         <  2:4494932/100‑1 (MQ=255)
                                                                                       caaTGGAAAGTAAAACGGTATTGCCCGTCCCGACAAATTTACTGCTGGTGCTCAACGAAGGACAGCACCTGCTCGATGTTGCGCTTGATGCGCTTGAGAt        <  2:100573/98‑1 (MQ=255)
                                                                                        gATGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTGAGATg       <  2:1786420/100‑1 (MQ=255)
                                                                                          tGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTGAGATGAg     <  2:4070802/100‑1 (MQ=255)
                                                                                          tGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTGAGATGAg     >  1:3722250/1‑100 (MQ=255)
                                                                                          tGGAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTGAGATGAg     >  1:3378166/1‑100 (MQ=255)
                                                                                            gAAAGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTGAGATGAgcg   <  1:1841863/100‑1 (MQ=255)
                                                                                            gAAAGTGAAGCGATATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGACGCGCTTGAGATGAgcg   >  2:4886059/1‑100 (MQ=255)
                                                                                             aaaGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGGGGGATGCGCTTGAGATGAgcgc  >  1:4687641/1‑100 (MQ=255)
                                                                                             aaaGTGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTGAGATGAgcgc  <  2:3918622/100‑1 (MQ=255)
                                                                                                 |                                                                                               
ACTATCGTGAATGCCCGTTTTTTGTCGCTCGTCGGGAGATTCAGGAAGCGGAAGTGGTGGTGGCAAACCATGCGCTGGTGATGGCGGCGATGGAAAGCGAAGCGGTATTGCCTGACCCGAAAAATTTACTGCTGGTGCTGGACGAAGGCCATCACCTGCCGGATGTGGCGCGGGATGCGCTTGAGATGAGCGC  >  NC_000913/833671‑833863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A