Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F9 I0 R1
|
58 |
62.8 |
1514203 |
84.7% |
1282529 |
220.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,665,698 |
T→C |
24.0% |
D38G (GAT→GGT) |
gadX ← |
acid resistance regulon transcriptional activator; autoactivator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,665,698 | 0 | T | C | 24.0%
| 77.5
/ 9.1
| 49 | D38G (GAT→GGT) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| Reads supporting (aligned to +/- strand): ref base T (33/4); new base C (2/10); total (35/14) |
| Fisher's exact test for biased strand distribution p-value = 6.59e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAAC > NC_000913/3665470‑3665833
|
ttACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGCAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGCTTTAATGCCTCCTCCTTG‑AGAATCGGGCGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑ACA‑A‑AACTTATCTACTCGAATTTGGCTTTCAt > 2:506942/1‑229 (MQ=255)
ttACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAt < 1:52275/229‑1 (MQ=255)
aGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGCATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCgag > 1:727044/1‑226 (MQ=255)
aGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTAACATACTCGAATTTGGCTTGAAT‑CCGCa > 2:710204/1‑228 (MQ=255)
aGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAA‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCac > 1:464856/1‑228 (MQ=255)
cATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCTTGTCCCTTGCCACGAATACAAAATTT‑TC‑AAA‑A‑AACTACTCACTTCGAATTTGGCTTGCAT‑CCCCaaa > 2:23026/1‑228 (MQ=255)
cATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTTTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑AACTTAACAACTCAAATTTGGCTTGCAC‑CCGAaaaa > 2:350564/1‑229 (MQ=255)
cATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCaaa > 1:100113/1‑228 (MQ=255)
cATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCaaa > 1:714788/1‑228 (MQ=255)
cATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TA‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCaaa > 2:141627/1‑228 (MQ=255)
cATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTACTTG‑AGCATCGGGAGACATACTTAAAGCTGGTCCCTTGACACGAATACAAAATTT‑TC‑AAA‑A‑CACTTATCTACTCGAATTTGGCTTGAAT‑CCGCaaa > 2:476190/1‑228 (MQ=255)
cGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGACGATTTAATGCATCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAC‑ACGCAAAAACCAGGTCACCGc > 1:62175/1‑229 (MQ=255)
cGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACCCGCATACAAAATTT‑TC‑AAA‑A‑AACTTATCTACTCGAATTTGGCTTGCAT‑CCCAAAAAAcaaaataaacac > 2:84597/1‑218 (MQ=255)
cGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATCCAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGACTTGCAT‑CCGCAAAAACAAGGTCACCGc > 1:706218/1‑229 (MQ=255)
cGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑ACCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCCATTTTGGCTTGCAT‑CCTCAAAAACCAGGACACCGc > 1:348372/1‑229 (MQ=255)
aTTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑AACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCCCCATTa > 2:721307/1‑229 (MQ=255)
aTTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCCCAATTAAAAAAg > 2:299879/1‑229 (MQ=255)
cGATCGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGTAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATACCGatat > 1:242491/1‑229 (MQ=255)
cGATAGTTGCGCAACTTCCTGATAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACCCGAATACAAAATTT‑TC‑AAC‑A‑CACTTATATACCCGAATTTGGTCTCATT‑CCGCAAAAACCAGGTCACCACCATTAAAAAAGcaaaa > 2:340144/1‑224 (MQ=255)
cGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAt > 1:42009/1‑191 (MQ=255)
cGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGata > 1:282403/1‑228 (MQ=255)
cGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTACCCCCCCTTAAAAAAGCggaat > 2:307521/1‑225 (MQ=255)
cGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTAACCGCCATTAAAATAACGata > 2:474987/1‑228 (MQ=255)
agATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAt < 2:42009/190‑1 (MQ=255)
aaTAGTGGCGAAATTTCCTGAAAAACAGA‑TATTTCTCTACTAAAGGGAAGAAGGGGTAATGAAGAAACTTTTTT‑ATGGG‑CATGATGTTTAAATGCTTCCCCCTTA‑AGCTTAGGGAAAAATAATGAAAGCGTGCCCCTTGACTCAAATACAAAATTA‑AC‑ACC‑A‑CCCTTCTCTCCTCAAATTTGGCTTGCCC‑CCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATAtt < 1:466076/228‑1 (MQ=255)
ctcacaaaaaaCAGGAAATCTCTTTACTACATGTATGAACGAGTAAGGAAAAACTTTTTTT‑AGGGG‑AATAAAGATTTAATCCCTCCCCCTTG‑ACAATGGGGAAAAATAAGAAAAGCTTGCCCCTTGACACAAATAAAAATTTT‑TC‑AAC‑C‑CTTTTATCTACTCAAATTTGGCTGGCAC‑CCAAAAAAACCAGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCAt < 1:721308/223‑1 (MQ=255)
cataaaaaaaAGG‑AATACCTCTAATACAGTGAGGAACAAAAAAGGAAAAAATTTTTTA‑ATGTG‑CATGAAGATTGAATCCCTCCCCCTTA‑AGCACCGGGAAAAAAAATGAAGGCGTGTCCCTTGACAC‑AAAAAAAAATTT‑TCAAAC‑A‑CATTTATCTACTCAATTTGGGCTTCCAC‑CCAAAAAAACAAGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATgg < 1:368925/224‑1 (MQ=255)
g‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGAAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGGGAGAATAAAttt > 1:541373/1‑229 (MQ=255)
ttctaTACTACAGGGATAAACGAGTAATAAAAAATTTTTTTT‑ATGGG‑AAGAAAGTTTGAATGCCCCCCCCTTG‑GCCATCGAGAAAAAAAATAAAGGGTTGTCCCTTGAACCAAATAAAAAATTT‑TC‑ACC‑A‑CTCTTATCTCCTCGATTTTGGTTTGCAC‑CCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt < 1:299879/228‑1 (MQ=255)
ctacAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCAt > 1:379602/1‑229 (MQ=255)
cAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCCCCATTAACCATGGGGAGAAAATATATAAGTCTTGCaaaac > 2:715340/1‑225 (MQ=255)
tgatgaACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAAc > 1:317847/1‑155 (MQ=255)
tgatgaACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATAtt > 1:288907/1‑184 (MQ=255)
tgatgaACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCa > 1:214380/1‑228 (MQ=255)
tgatgaACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAAAAGCGATATTCACCATTAACCATGGTGAAAATAAATTTATTTTTTGCAAACGCa > 2:709772/1‑228 (MQ=255)
atgaACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAg > 1:429384/1‑175 (MQ=255)
atgaACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTAGGAATATATTAATGTCTTGCATACGCAAt > 1:102645/1‑228 (MQ=255)
atgaACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGAGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTACCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTATTGCAAACGCACtt > 2:379579/1‑229 (MQ=255)
cgggTAAAGAAAAAACTTTTTT‑ATTTGACAGAAAGTTTTATGGCCTCCCCATTA‑AACATCGGAAAAAATAATGAAAGCGTGTCCCTTGACACAAAAACAAAATTT‑TC‑ACC‑C‑CATTTATCTACTCAAATTGGGCTTGCAT‑CACAAAAACCCGGGTACCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc < 1:709773/226‑1 (MQ=255)
gaaaaaagaaaaaATTTTTTT‑ATGTG‑CAAAAAGATTTAACGCCCCCTCTTGG‑AGACGCGGAAAAAATAATGAAGGGGTGCCCCTTGACACAAATACAAAATTT‑AC‑AAC‑A‑CTTTTATCTACTAGATTTTGGCTTCCAC‑CCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa < 1:487594/222‑1 (MQ=255)
aattaTGAAAAAAATTTTTTCATGGG‑AATGAAGTTTGAATCCCCCCTGCTGG‑AACATCGGGAAAAAAAATGAAAGCTTCTCCTTAAACACGAATACAAAATTT‑AC‑AAC‑A‑CTATTATTACCTGGAATTGGGTTTGCAC‑CCAAAAAACCCAGATATCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa < 1:340144/225‑1 (MQ=255)
gTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCACGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATCTATTTATGTTTTACATAACCAATTAAAAAAtt > 2:76146/1‑229 (MQ=255)
taataaAAAATCTTTTTT‑ATGTG‑AATAAATATTTAACCCCCCCCTCTAG‑ACCATCGGAAAAAATAATGAAAGGGTTCCCCTAGACACGAATAAAAAATTT‑CC‑AAC‑C‑CACTTATCTACTCAAATTTGGTTTGCAT‑CCAAAAAACCCAGTTCTCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa < 1:350564/226‑1 (MQ=255)
aaaacttttttt‑AGGTG‑CATGAAGTTTTAATCCCCCCTCATTG‑AACATAGGGAAAAAAAATGAAGGCGTGTCCCTTAAAAAGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCACCGAGAATTTGG‑TTTCATCCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGt < 1:636742/223‑1 (MQ=255)
ttt‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CAGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATACATTTATGTCTTGCATACTCAATTAGACAATTCCCATGTAGAGATTga > 2:98701/1‑228 (MQ=255)
gtg‑AATGAACTTTTAATGCCCCCCCTTGG‑AGCAGGGGAAAAAATAATGAAGGGGTGCCCGTTAACACGAATACAAATTTT‑CC‑AAC‑C‑CATTTATCTACTAAAATTTGGTTTGCAC‑CCAAAAAACCCAGCTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt < 1:98701/229‑1 (MQ=255)
tgtaaaaataTTTTATGCCCCCACCCTGAAGAATCGGGAGAAAAAAAGAACGGGTG‑CCCCTGACAAGAAAAAAAAATTTCAC‑AAC‑C‑ATCTTCTAACCATGAGTGTGGTTGCCAC‑CCACAAAAACGTGTACACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt < 2:167328/220‑1 (MQ=255)
g‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTg > 1:555811/1‑229 (MQ=255)
tGCCTCCTCGTTG‑AGCAGGGGGAAAAAAAAGGAGAGGTTGCCCGTTCACAAAAATA‑AAATTTT‑TC‑CACAA‑CAATTATTAACACAAATGGGGGTTGAAC‑CCAAAAAAACAAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt < 1:74296/229‑1 (MQ=255)
tGCCTCCTCCTTG‑AGAGTGGGAAAAAATAAAGAAAGCTGCTCCCGTGACA‑GAAAAAAAAATTT‑TC‑AAA‑ACCTCTTACCTCCTAGATTTTGGTTTCAAT‑CCGAAAAAACAAGGTCGCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt < 1:76146/229‑1 (MQ=255)
tGCCTCCCCCTAG‑AACATCGGGAAAAATAAAGAAGCCTTGCCCTGTAAAAACAATAAAAAATTT‑AC‑ACC‑A‑CTCTTATCAACTAAATTTTGGCTTGCAC‑CCGAAAAACCGGGGACACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt < 1:224154/229‑1 (MQ=255)
tcctcctTG‑AGCATTGGGAGAAATAATGAAAGAGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGTTATTCACCATTAACCATGGTGAGAATATATTTATGGCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCCTAGTTGACTTAAAATTACATaaca > 1:160036/1‑227 (MQ=255)
cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAAcc > 2:408626/1‑130 (MQ=255)
|
TTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGG‑AATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTT‑ATGTG‑CATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTT‑TC‑AAC‑A‑CACTTATCTACTCGAATTTGGCTTGCAT‑CCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAAC > NC_000913/3665470‑3665833
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
