Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F3 I0 R1 31 158.2 2857830 96.8% 2766379 259.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
JC NC_000913 2,023,796 Δ5 bp 14.5% intergenic (+118/‑168) fliR → / → rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2023801 =127 (0.860)20 (0.140) 20/480 NT 14.5% intergenic (+123/‑167) fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis
?NC_000913 = 2023795 113 (0.800)intergenic (+117/‑173) fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

ACAAGCTATGGCAAGGTCATCAACGGTTTCAATGTCGTTGATTTCTCTTTTTTTAACCCCTCTACTCAACAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2024096‑2023801
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaagtaaaTGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTGCGGGGCCA  <  NC_000913/2023795‑2023512
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
ACAAGCTATGTCAATGTCATCAACGGTTTCAATGTCGTTGATTTCTCTTTTTTTAACCCCTCTACTCAACAGATACCCTGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCCTTTACATGGCATACCCTCACTCAATGCTTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCATTCTCGCGATTTTTCAGGCTGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTA                                                                                                                                                                                                                                                                                                     <  1:829628/289‑1
      TATTGCAAGGTCATCAACCGTTTCAATGTCGTTTAATTCTCTTTTTTTAACCCCTCTACTCCACAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTGGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAA                                                                                                                                                                                                                                                                                               <  2:674603/289‑1
      TATGGCAAGGTCATCAACGGTTTCAATGTCGTTGATTTCTCTTTTTTTAACCCCTCTACTCAACAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGT                                                                                                                                                                                                                                                                                                 <  1:880124/287‑1
      TATGGCAAGGTCATCAACGGTTTCAATGTCGTTGATTTCTCTTTTTTTAACCCCTCTACTCAACAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGT                                                                                                                                                                                                                                                                                                 <  1:723527/287‑1
                                                                     CAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGT                                                                                                                                                                                                                                >  1:446266/1‑289
                                                                          ACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTA                                                                                                                                                                                                                           >  1:86906/1‑289
                                                                                            GGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATA                                                                                                                                                                                                         <  2:1158410/289‑1
                                                                                                         TAAATGCATAATAATCGTTGACATGGCATACCCTCGCGCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCAGCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCCCTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAA                                                                                                                                                                                            <  1:789675/289‑1
                                                                                                                 TAATAATCTTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAA                                                                                                                                                                                    >  2:588566/1‑289
                                                                                                                       TCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTT                                                                                                                                                                               >  1:1413464/1‑288
                                                                                                                                      ACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAAT                                                                                                                                                               <  2:446266/289‑1
                                                                                                                                            ACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAAT                                                                                                                                                         >  1:347885/1‑289
                                                                                                                                                  TGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGAT                                                                                                                                                                                      <  1:665068/254‑1
                                                                                                                                                  TGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGAT                                                                                                                                                                                      >  2:665068/1‑254
                                                                                                                                                                                TTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCA                                                                                                                     <  1:588566/289‑1
                                                                                                                                                                                                   AACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTT                                                                                                                                                                                                                                                                       >  1:471633/1‑124
                                                                                                                                                                                                   AACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTT                                                                                                                                                                                                                                                                       <  2:471633/124‑1
                                                                                                                                                                                                                ACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAA                                                                                     <  2:347885/289‑1
                                                                                                                                                                                                                ACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATA                                                                                                                                                                                     >  1:865259/1‑193
                                                                                                                                                                                                                ACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATA                                                                                                                                                                                     <  2:865259/193‑1
                                                                                                                                                                                                                       GCGCCACTATCGCGATTTTCCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGACTGGAATTGTCTCAAAGTAATTGTTGCGATTTGAGAGTGCGCTTAAAAAAAATATTTCGCTGCCGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGACAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATT                                                                              >  2:1205877/1‑289
                                                                                                                                                                                                                                                               TAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATT                                                                                                                                                                       >  2:166293/1‑160
                                                                                                                                                                                                                                                               TAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATT                                                                                                                                                                       <  1:166293/160‑1
                                                                                                                                                                                                                                                                                TGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAA                     <  2:1413464/289‑1
                                                                                                                                                                                                                                                                                           GTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTG          <  1:90699/289‑1
                                                                                                                                                                                                                                                                                                AAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTGCGGGG     <  2:223381/289‑1
                                                                                                                                                                                                                                                                                                 AAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTGCGGGG     >  1:1351019/1‑288
                                                                                                                                                                                                                                                                                                 AAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAAT                            >  2:1062764/1‑265
                                                                                                                                                                                                                                                                                                 AAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAAT                            <  1:1062764/265‑1
                                                                                                                                                                                                                                                                                                     AAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTGCGGGGCCA  <  2:316330/287‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
ACAAGCTATGGCAAGGTCATCAACGGTTTCAATGTCGTTGATTTCTCTTTTTTTAACCCCTCTACTCAACAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2024096‑2023801
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaagtaaaTGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTGCGGGGCCA  <  NC_000913/2023795‑2023512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A