Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F17 I0 R1 43 55.2 1410130 81.3% 1146435 215.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,520,084 G→A 32.9% intergenic (+20/‑178) curA → / → mcbR curcumin/dihydrocurcumin reductase, NADPH‑dependent/colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,520,0840GA32.9% 26.2 / 4.2 36intergenic (+20/‑178)curA/mcbRcurcumin/dihydrocurcumin reductase, NADPH‑dependent/colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled
Reads supporting (aligned to +/- strand):  ref base G (8/14);  new base A (7/3);  total (16/20)
Fisher's exact test for biased strand distribution p-value = 1.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCAAGGTTTTATTATCGCTCAGGATTATGGTCACCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGTGATGATTAAA‑GTTTCAA‑CGGCGGC‑GTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGAATTCCTTCTGCCATGCAGGCAGGGTTGGAC‑AGAAAACACGCGAAGGAATTAAAATGCCTGGAACGGGAAAAATGAAACATGTCAGTTTGAC  >  NC_000913/1519863‑1520299
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                        
gCAAGGTTTTATTATCGCTCAGGATTATGGTCACCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGTGGTGATTAAA‑GTTTTAA‑AGGGGGC‑GTAAGACGCCa                                                                                                                                                                                                                    >  1:347670/1‑228 (MQ=255)
        ttattaTCGCTCAGGATTATGGTCACCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGGGATGGTTAAA‑GTTTCAA‑CGCGGGC‑GGAAACCGCCATaaaaaac                                                                                                                                                                                                            >  1:656761/1‑226 (MQ=255)
                gCTCAGGATTATGGTCACCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑ATTGGGCGAAAGAGGATAAAATCCACTACCGCGAAGAAATTAATGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGTGATGATTAAA‑GTTTCAA‑AGGCGGG‑GTAAACCGGCATaaaaagaccgggaa                                                                                                                                                                                                     >  1:304876/1‑218 (MQ=255)
                gCTCAGGATTATGGTCACCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCACAGTGGAGATCAGCGGGGCGGGGGATGCGTAAA‑AATTTAA‑AGGCGGG‑GGAAGCGGCCCCaaaaaaaaagagaaa                                                                                                                                                                                                    >  2:368648/1‑218 (MQ=255)
                           tGGTCACCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGTGATGTTTAAA‑GTTTCAA‑CGGCGGC‑GTAACGCGCCATAAAAATCCAGGCGAAAAGCTtttttt                                                                                                                                                                                         >  1:12501/1‑228 (MQ=255)
                           tGGTCACCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGGGATGATTAAA‑GTTTAAA‑AGGGGGG‑GTAAACCGCCCTAAAAATCCCAGCAAAAAACTTAtttt                                                                                                                                                                                         >  1:472045/1‑228 (MQ=255)
                                aCCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGGGATGTTTAAA‑GTTTCAA‑CGGCAGC‑GGAAGCCGCCATAAAAAGCCTAGTCACAAGGTTAtttttacct                                                                                                                                                                                    >  1:229592/1‑223 (MQ=255)
                                aCCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGGGATGGTTAAA‑GTTTCCA‑CGGCGGCGGTAAACCGCCCAAAAAATCAGGGCAAAAACTTTTTTTTCAgt                                                                                                                                                                                     >  2:411308/1‑227 (MQ=255)
                                aCCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGGGATCGGCGTGGCGGGTGAGGGTTAAA‑GTTTAAA‑AGGCGGG‑GTAAGGCGCCCTAAAAATTCAGGCAAAAAACTTATTTTTAGCt                                                                                                                                                                                    >  1:252361/1‑228 (MQ=255)
                                     aTCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGGGGTGATTAAA‑GTTTCAA‑CGGCGGC‑GTAAACCGCCCTAAAAATCCACGCGAAAAGCTTATTTTCAGCTttaat                                                                                                                                                                               >  1:351581/1‑228 (MQ=255)
                                           gggattCAGGGGGAAAAGGGGCAAAGGGGTAAAAGAGGAAAAAACCCCCTCCCGGGAAAAAATTCCGTACGGTTTA‑GAGATGGCCC‑CACAGCCGTTTATCGGCCTGCTGAAGGGTAAAAACTCCGGCAAAGTGGTGACCCGCGTGGCGGGTGATGATTAAA‑GTTTCAC‑CGGCGGC‑GTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATtaact                                                                                                                                                                          <  1:344224/224‑1 (MQ=255)
                                              tttCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGTGATGATTAAAGGTTTCAA‑‑GGCGGC‑GGAAACCCGCACAAAAATCCACGACAAAAGTCTACATTCAACTTTCAATAAATAAcc                                                                                                                                                                      >  1:67376/1‑228 (MQ=255)
                                               ttgagggggAGAGGGGGC‑AGGGGGTGAAAGAGGAAAAAACCCCACGGCGAGAAGAAATGGCGGGCGGTTGA‑GATAGGGACC‑AACAGGCGTTTACGGGCCTGGGGAAGTAAAAAAATTCCGGCAAATGGGTGCCCCGCGTGGGGGGTAAGGATTAAA‑GTTTCAA‑CGGCGGC‑TTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACca                                                                                                                                                                     <  2:521049/222‑1 (MQ=255)
                                                                      ggTGAAAGGGGATAAATGCCACGACCGCAAAGAAATTCGTGACGGTTAA‑GGAAAGGCGC‑AACAGGCTTTTAAGGGCTGGTAGATGGATAAAAACTGAGGAAAAGTGTTAATCGGCGTGGGGGTGGATGAGTAAA‑GTTGCAA‑CGGCGGC‑TTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCATCTTTAATTAACTAACCACATCATTGTTCTGCTGCtaat                                                                                                                                                <  1:320717/227‑1 (MQ=255)
                                                                                    aaaCCCACTCCCGCGAAAAATTTTCGGAGGGTTTA‑AAGAAGGCGC‑CACAGGCGTTTATCGGCCTGGTGAAGGGTAAAACCTTCGGCAAAGGGGTGACCCGCGTGGCGGTTTATGAAAAAA‑GTTTAAA‑CGGCGGC‑TTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAg                                                                                                                                 <  2:550497/228‑1 (MQ=255)
                                                                                     acccccccaCCGGGAAAAAATTTCTGACGGTTAA‑GAGAATCCGC‑CACGGACTTTTACGGGCCTGCGAAAGGATAAAAACTTGGGCAAGGTGGTCACCCGCGTGGCGGGTGATGATTAAA‑GTTTCAA‑CGGCGGC‑ATAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAg                                                                                                                                 <  1:57660/219‑1 (MQ=255)
                                                                                     aaTCCGCTACCGAAAAAAAATTATTG‑TGGTTTAGGAGATTCCAC‑GAGAGACGTTTACCGGCGTGCTGAAGTGTAAAATCTACGGCAATGTGGTGACCCGCGTGGCGGGTGATGATAAAA‑TTTTCAA‑CGGCGGC‑GTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAg                                                                                                                                 <  2:387509/227‑1 (MQ=255)
                                                                                         cACTACCGAGAAAAAATTACTGACGGTTTA‑GGAAAGGCGC‑CACAGACGTTTATGGGCCTGGTAAAGGGTAAAAGCTTCGGAAAGGTGGTGATCCGGGTGGCGGGTGAGGATAAAA‑GTTTCAA‑CGGCGGC‑GTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGtt                                                                                                                            <  1:36057/228‑1 (MQ=255)
                                                                                                 cgAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGGGATGATTAAA‑GTTTCAA‑CGGCGGC‑GTAAGCCGCCCTAAAAATCCAGGGAAAAAAGTTATTTTTAGCTTTTATTAACTAACCACATCATTGTTTTGCATCTAATAAAACCAAAAGtatggggg                                                                                                                             >  2:36057/1‑212 (MQ=255)
                                                                                                   acgaatatACTGACGTTATA‑GAGAAGTGGA‑CCCAGTAGTTGAGCGACCGGCTGAAGGTTAAAATCTGCGGGAAAGTGGTACTCCGCTGGGGGGGCGATGATTAAA‑TTTTAAA‑GAGCGGC‑ATAGACCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGattatt                                                                                                                  <  1:672892/221‑1 (MQ=255)
                                                                                                   aagaaTTTCCTGATGTTTTA‑AGGAAT‑CGCACACGGGCGTTTACCGGCCTGCTAAAGGGAAAAAACTCAGAAAAAGTGGTATACCGCGTGGCGGGTGAAGATTAAA‑GTTTAAA‑CGGCGGC‑GTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTAATTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGattatt                                                                                                                  <  1:368648/228‑1 (MQ=255)
                                                                                                           aCTGACGTTTAA‑GAGAATGCGC‑CACGGACGTTTAGCGGCAGGTTGAAGTGTAAAAACTTCGAAAAGGTGGTAATCCGCGTGGCGGGTAATGATTAAA‑GTTTCAC‑CGGCGGC‑GTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTaa                                                                                                          <  1:158553/228‑1 (MQ=255)
                                                                                                               aCGGTGTA‑GAGAAGGCGC‑CACAGACGTTTATGGGCGTGTTAAAGGGTAAAATCTTCAGAAAAGTGGTGATCCGGGTGGCGGGTGATGATTAAA‑TTTTCAA‑CGGCGGC‑TAAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATaca                                                                                                      <  1:266526/228‑1 (MQ=255)
                                                                                                                        gaaaaTGCGC‑CACAGGCTTTAAGCGGCGTGGTAAAGGATAAAAACTGCGGCAAGGTGGTGACCCGGGGGGCGGGGGAAGA‑TAAA‑ATTTCAAGCGGCGGC‑GAAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGa                                                                                              <  1:564405/225‑1 (MQ=255)
                                                                                                                                                                    actgcgcaaaaGTGGTGATCCGAGGGGCGGGTATTGTTTAAA‑TTCTCAA‑CGGCGGG‑TAAATCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGAATTCCTTCTGCCATGCAGGCAGGGTTGGAC‑AGAAAACACGCGa                                                  <  1:301026/220‑1 (MQ=255)
                                                                                                                                                                     ttgcGGAAAAGGGGTGACCCGCGGGGCGGTGAATGATTAAG‑TTTTCAA‑GGGCGGC‑GAAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGAATTCCTTCTGCCATGCAGGCAGGGTTGGAC‑AGAAAACACGCGa                                                  <  1:352664/224‑1 (MQ=255)
                                                                                                                                                                        cGGCAAAGTGGTGATCCGCGTGGCGGGTGATGATTAAA‑GTTTCAA‑CGGCGGC‑GTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTTTGCTGCTAATAACAACAAAGGGGAGTGGTTTATGATTATTTACTTTAATAACCCAGGTGAATTCCTTTTGCCATGCAGGCAGGGGTGGAC‑AGAAAACACCCGAAg                                                >  1:353137/1‑226 (MQ=255)
                                                                                                                                                                         ggCAAAGTGGTGATCCGCGTGGCGGGTGATGATTAAA‑GTTTCAA‑CGGCGGC‑GTAAGCCGCCCTAAAAATCCAGGGAAAAAAGTTATTTTTAGCTTTTATTTAACAACCACATCCTTTGTTTTCTGCCAATAAAAACCAAAGTGAGTGGGTTATGATTTTTTACTTTTATATACCAGGGGCATTCTTTTTGCCATGTATGTAGGGTTGGGC‑aaaaaaacaccgcaa                                                >  2:411924/1‑216 (MQ=255)
                                                                                                                                                                                tggtgATCCGCGTGGCGGGTGATGATTAAA‑GTTTCAA‑CGGCGGC‑GTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACAAACCACATCATTGTTCTGCTGCTAATAAAAACAAAAGTGAGTGGGTTATTATTATTCACTTTAATACACCAGGGGAATTCCTTTTGCCATGCAGGCAGGGGTGGACAATAAAACAC‑CGAAGAAATTtaaaa                                      >  1:258757/1‑227 (MQ=255)
                                                                                                                                                                                             ggggggTAATAATTAAA‑GTTCAAG‑CGGGGGT‑GAAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGAATTCCTTCTGCCATGCAGGCAGGGTTGGAC‑AGAAAACACGCGAAGGAATTAAAATGCCTGGAACggg                          <  1:411308/224‑1 (MQ=255)
                                                                                                                                                                                             ggCGGGTTATGATTAAA‑GTTACAA‑CGGGGGG‑GAAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGAATTCCTTCTGCCATGCAGGCAGGGTTGGAC‑AGAAAACACGCGAAGGAATTAAAATGCCTGGAACggg                          <  1:411924/227‑1 (MQ=255)
                                                                                                                                                                                                     atttatAAA‑TTTTCAA‑CGGCGGC‑ATAAACCGCCATAAAAATCCAGGCAAAAAGCTTATTTACAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGAATTCCTTCTGCCATGCAGGCAGGGTTGGAC‑AGAAAACACGCGAAGGAATTAAAATGCCTGGAACGGGAAAAATGaa                 <  2:353137/223‑1 (MQ=255)
                                                                                                                                                                                                          tAAA‑TTTCCAA‑AGGCGGC‑GTAGTCCGGCATAAATATCCAGGCAAAAAGCTTATTTTCATCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGAATTCCTTCTGCCATGCAGGCAGGGTTGGAC‑AGAAAACACGCGAAGGAATTAAAATGCCTGGAACGGGAAAAATGAAACAt             <  1:87492/227‑1 (MQ=255)
                                                                                                                                                                                                                   cAA‑CGGCGGC‑GTAAACCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCGTTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTTTTCACTTTATAACACCAGGGGAATTCCCTTCGCCATtcag                                                                            >  2:38884/1‑157 (MQ=255)
                                                                                                                                                                                                                      ctgcgggc‑tTAAACCGCCATAAAAATCCAGGAAAAAAGTTTATTTTCAGCTTTAAGTAACTAACCACATCATTGTTCTTCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGAATTCCTTCTGCCATGCAGGCAGGGTTGGAC‑AGAAAACACGCGAAGGAATTAAAATGCCTGGAACGGGAAAAATGAAACATGTCAGTTTGAc  <  2:252361/223‑1 (MQ=255)
                                                                                                                                                                                                                       acctggtaatAACCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCAAATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGAATTCCTTCTGCCATGCAGGCAGGGTTGGAC‑AGAAAACACGCGAAGGAATTAAAATGCCTGGAACGGGAAAAATGAAACATGTCAGTTTGAc  <  1:282201/219‑1 (MQ=255)
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                        
GCAAGGTTTTATTATCGCTCAGGATTATGGTCACCGCATCCATGAGTTTCAGAGGGAGATGGGGC‑AATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGAAATTACTGACGGTTTA‑GAGAATGCGC‑CACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTGGCGGGTGATGATTAAA‑GTTTCAA‑CGGCGGC‑GTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACATCATTGTTCTGCTGCTAATAACAACAAAGGTGAGTGGTTTATGATTATTCACTTTAATACACCAGGTGAATTCCTTCTGCCATGCAGGCAGGGTTGGAC‑AGAAAACACGCGAAGGAATTAAAATGCCTGGAACGGGAAAAATGAAACATGTCAGTTTGAC  >  NC_000913/1519863‑1520299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A