Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F27 I0 R1
|
60 |
79.9 |
2053078 |
82.8% |
1699948 |
215.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,638,228 |
A→G |
23.5% |
E196G (GAG→GGG) |
pitA → |
phosphate transporter, low‑affinity; tellurite importer |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,638,228 | 0 | A | G | 23.5%
| 85.8
/ 3.9
| 55 | E196G (GAG→GGG) | pitA | phosphate transporter, low‑affinity; tellurite importer |
| Reads supporting (aligned to +/- strand): ref base A (17/22); new base G (9/5); total (28/27) |
| Fisher's exact test for biased strand distribution p-value = 2.24e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTCTCATACGCTGATTGGCGCGATCATCGGGATTGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTT > NC_000913/3638001‑3638463
|
ctctCATACGCTGATTGGCGCGATCATCGGGATTGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTTTGATTTTCTTGCTGGCTTGCTCCCGGAGCGGGACCA‑AAAAACGCCCCCCGTTCCCCCTGACCCCACCCGGGCGGGaaacaa > 1:960190/1‑236 (MQ=255)
tcATACGCTGATTGGCGCGATCATCGGGATTGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAaaagaaa < 1:388284/238‑1 (MQ=255)
aTTGGCGCGATCATCGGGTTTGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAGTATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGCTTTTTTTGCTTCGTCGCTACTGGGTCGGGCCCACAGAAACGCCCCGGTACCCCCCTTA‑CCCAACGGGGCGGGAAAAGAAAAACgggcaaaa > 2:388284/1‑233 (MQ=255)
aTTGGCGCGATCATCGGGATTGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGCTGCACTCAATATCCCGACAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTTTGCTTTTCTTTCTGCGTAGCTACCGGAGCGGCCCCC‑AGAAACGAGCCCGATTCCACCCGACCCCAACGGCCGGTGAAAAGAAAGTAGGCCAGaa > 1:920955/1‑239 (MQ=255)
aTTGGCGCGATCATCGGGATTGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAACGAATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCTGCCTGTCGTTTGCTGGCGGTCTGCTTTTCTTGTCTCGCCGTTTCTGTAGCGGCCCAA‑CGAAAACCCCCCGTATCCACCTGACCCCCCCGGGACCTCAAAAAAAAAACCACAAGaa > 2:868721/1‑239 (MQ=255)
aTTGGCGCGATCATCGGGATTGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTTTTGTTGCGTCGCTACTGGAGCGGCACCA‑AGAAACCCCCCCGGATCCCCCTGACCCCAGCGGGGCGTGGAAACAAAGACGGCAAGaa > 1:610860/1‑239 (MQ=255)
aTTGGCGCGATCATCGGGATTGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGGGCGGCACCC‑AGAAACGCGCCCGTATCCACCCGACCCCAACGGGGCGTGAAAAGAAAGACgcacaaaa > 1:1012590/1‑232 (MQ=255)
aTTGGCGCGATCATCGGGATTGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAACGGGCCCC‑AGAAACGCGCCCGTATCCACCTTACCCCAGCGGAGCGTGAAAAGAAAACAGGCAAGaa > 1:558317/1‑239 (MQ=255)
gggTTTGTTTTACCCAGTGGTTTGAGGCCCGGGGCGGCGGTGTGTGATGCCCTCACTATCCCGAAAGTTTTAATTTTTTTCGGTTCTCTTATCGTTTCCCCGATTGTCGGCCTGTGGTTCGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCCCCTGACCCCAGCGGGGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTg < 2:1012590/239‑1 (MQ=255)
ttGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGAGGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGAc < 1:241893/238‑1 (MQ=255)
ttGGTTTAACCAAGGCGTTGATGCCCGGGCCGTCAGTGGGGGATGCACTCAATATCCCGAAATTATTAAGTTTTTTCGTTTCTTTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTCCTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGCCCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGAc < 2:719891/238‑1 (MQ=255)
tGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTTCTGCGTCGCTACTGGAGCGGCACCC‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGGGCGTGGAAAGAAAAACGGGAAGAAAAAACCGCCGTTTCGGAccg > 1:549952/1‑237 (MQ=255)
tttacccgttGCTTTGGTTACGGGGAGGTGAGGGTTGGATGCACTAATTTGCCCGAATGTATTGAGTATTTTCGGTTTTCTGATCGTTTCCCCTATGGTCGGCCTGGTGTTTGCGGGCGGTCTGATTTTCTTGCTGCGTCGCTCCTGGGGCGGCACCA‑AGAACCGCGCCCGTATCCACCTGCCCCCATCGGAGCGTGAAAAGAAAGCCGGCAAGAAAAAGCCGCCGTTCTGGACGCGTa < 2:484127/230‑1 (MQ=255)
tttAACCTGTGTGGTTATGACGGGGTCTTCGGTGGTTGATGCTCTCAATAACCCGAATGTATTAAGTATTTTCGTTTCTCTGATCGTTCCCCCTATTGGCGGCCTGGTGTTTGCTGGCGGTCTGATTTCCTTGCTGCGTCGCTACGGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTa < 2:460695/239‑1 (MQ=255)
tttAACCAATGGGTTGATGCCCGGGCCGGTAGTGGTGGATGCACTCAATATCCCGAAAGTTTTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTa < 1:975727/239‑1 (MQ=255)
aCCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTTTTGCTGCGTAGCTCCTGGGGAGGCACCC‑AGAAACGCGCCCGGATCCACCGTGCCCCCTCGGAGCGCGAAAAAAAAAACGGCAAGAAAAAACCGCCCTTTTggcagcgcgttgt > 2:566084/1‑228 (MQ=255)
aCCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGGGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCACCGGGGCGTGAAAAGAAAAACGGCAAGAAAAAACCGCCCTTCTGGACGCGGATTg > 1:719891/1‑238 (MQ=255)
tGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTTTCCCGTCGCTCCTGGCGCGGCACCC‑AGAAACGCGCCCGTATCCACCTCACCCCAGCGGAGGCAGAAAAGAAAGACGGCAAGAAAAAACAGCCGCTCTGGGCGCGGATTgggccg > 2:810793/1‑236 (MQ=255)
tGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGGATCCACCTGACCCCCGCGGAGCGTGAAAAGAAAAACGGCAAGAAAAAGCCGCCGTTCTGGACGCGGATTGGGCTGa > 1:502833/1‑239 (MQ=255)
gatgaCCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCCCTCCTGGGGCGGCCCCA‑AGAAACGCCCCCGTATTCCCCCTACCCCACCGGGACGGGAAAAGAAAAAAGGACAGGAAAAACCACCGCTCCGGACCCGTATTgccataacacct > 2:313096/1‑228 (MQ=255)
gggACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCCCCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGGGAAAAGAAAGACGGCAAGAAAAAACCGCCGTTCTGGGCGCGTATTGCGCTGATCCTTTCCGCTa > 1:943735/1‑238 (MQ=255)
gATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGGATTGCCCTGATCCTTTCCGCTATCGGCGGGGGGgttt > 1:262501/1‑238 (MQ=255)
cACGCAATACCCGAAAAGTATGAGTTTTTTTCGGTTCTCTGACCGTTTCCCTTATGGTCGGCCTGGTGTTTGCGGGCGGTCTGATTTTCTTGCTGCGGCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGCCCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCa < 1:810793/238‑1 (MQ=255)
aagtattaagtattTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGGGCGTGAAAAGAAAGACGGCAAGAAAAAACCGCCGTTCTGGACGCGGATTGCGCTGATCCTTTCCGCTATCGGCGGGGGGGTTTGCCACGGCGGGGACCATGGt > 1:178802/1‑239 (MQ=255)
gttgttgcGGTTCTTGTATCGTTTCCCTTTTTGCCGGCCTGGTGTTTGCGGGCGGTTTAATTTTCTGTCGGGCTCCGTACGGGGGCGGCACAA‑AGAACCGCGCCCGTATCCCCCTGTCCCCAGCGGAGCGGGAAAAGAAAGCCGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGc < 2:943735/232‑1 (MQ=25)
ccGGTTTTCTGATCGTTTCCCCTTTTGTCGGCCTGGTTTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCCCCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGt < 1:727954/238‑1 (MQ=255)
tctcTGCTCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTTTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCCCCTGCCCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGt < 1:611450/239‑1 (MQ=255)
tctGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAACCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTTCGCTATCGGCGTGGCGGTTTTCCACGGGGCGCACCGTGGTCGAGAAGGCAATTGGCTGGttt > 1:1000873/1‑238 (MQ=255)
gtctttttCCCTTATTGGCGGCTGGGGTTTTGGGGGCGGTCCTTTTTTCTTGGCGCGTCGCTCGGGGGGGGCCACCA‑AAAAACGCCCCGTTATCCACCTGCCCCGAGCGGAGCGTGAAAAGAAAGACGGAAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATg < 2:107938/233‑1 (MQ=25)
ggcGGCCGGGTGTTTGCGGGCGGTTGGATTTTCTGGCTGCGTCGCTACGGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGGGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGt < 1:168397/237‑1 (MQ=255)
gTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCCCTATCGGCGTGGGGGTTTCGCCCGGCGCGAACGAAGGTGCGAAAGGGATTGGTGTGGTTTTGTTGGGattgatctgtt > 1:107938/1‑233 (MQ=255)
tttttttgtGGCGGTCTGTTTTTTTTGTTGGCTCGCTACGGGGGCGGCCCCA‑AGAAACGCCCCCGTATCCCCCTGACCCCAGCGGAGGGTAAAAAGAAAGACGGAAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCcagc < 2:1000873/231‑1 (MQ=37)
cGGTTTGATTTCCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGCCGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCgtg < 1:755303/238‑1 (MQ=255)
tgcGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCCGAAAGGCa > 2:613669/1‑171 (MQ=255)
tgcGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCa < 1:613669/171‑1 (MQ=255)
cgcgcgACGGGAGGGGCCACA‑AAAAACCCCCCCGGACCCACCGGACCCCAGGGGAGCGTGAAAAGAAAGACGGAAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTgg < 1:424197/236‑1 (MQ=37)
ggctcgtGGGGCGGCAACA‑AAAACCCCGCCCGTATCCCCCTGACCCGAGGGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCt < 1:190554/232‑1 (MQ=38)
ggAGCGGCACCA‑AGAAACCCGCCGGTACCCCCCTGACCCCAGCGGGGGGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATc < 1:359585/239‑1 (MQ=255)
gCGGCCCCA‑AGAAACGCGCCCTGACCCCCCCGCCCCCAGCGGGGGGTGAAAAAAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATCac < 2:786059/238‑1 (MQ=38)
gCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATAacccgt > 1:215960/1‑239 (MQ=255)
gCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCAAGGCGCGAACGATGGTCAGAAAAGCCTTGGTCTGGTTATGTTGGtc > 1:151456/1‑172 (MQ=255)
cACCA‑AGAAACGCGCCCGTACCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATCacccgt < 1:168677/238‑1 (MQ=255)
cgcgCCCGTATCCACCTTACCCCAGCGTTCCGCGAAACGAACGCCGGCAAGAAAAAGCCGCCGTTCTGGGCGCGAATTGCGCTGATCCTTTCCGCTATCGGCGTAGCGTTTTCCCCCGAGGCGAGCGGTGGCCCGCACGGCAGTGGGCTCGCTTTTTTGGCATTGTTTTGCGTCCCGCCCCCAGGCC‑TCGCGGGGCACAGTAATTCCCCTGGGTAGGCAACTacccggacccgtcacac > 2:159604/1‑234 (MQ=255)
cgcgCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCCCGGCGCGAACGATGGTCAAAAAGGCCTTGGTTGGGTTATTTTGGGATTGCTTGGCTGCGCGCCCTCAGGGTGTCGTGGTGAACA‑GAATGCCCCCTGCCACGAAAAAaccccgaccccggggg > 2:736203/1‑232 (MQ=255)
ccccccTTACCCCCCTGCCCCGAGCGGGGCGAGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGcc < 1:789286/236‑1 (MQ=37)
cgcCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGGATTGATTTGCTTGCCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCCCTGGCTCGGAAATCACCCTTACCCGGGGTGcc > 1:206589/1‑238 (MQ=38)
ttATCCCCCTGCCCCCAGGGGGGCGGGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATcaac < 1:843975/238‑1 (MQ=255)
ccACCTGACCCCAGGGGAGCTGGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACg < 1:580230/239‑1 (MQ=255)
aCCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGGCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCCCTGGCTACGAAATCACCCGTACCCCGGATGCCATcaacactgt > 1:401915/1‑234 (MQ=255)
cTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGGTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGCAATCACCCGTACCCGGGGTGCCACCAAAAACGTCgc > 1:845229/1‑238 (MQ=255)
aCCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGGCTGGGTATGTTGGTATTGATTGGCGTCGCGCCCGCAGGCT‑TCGTGGGGAAACTGAATGCCACTGGCTACGGAATAACCCGTACCCCTGATGCCCTCCACAACGTcagagg > 1:76309/1‑234 (MQ=37)
aCCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGAATTGGTCTGGTTATGTTGGGATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGGGAACATGAATGCCACTGGCCACCAAATACCCCGTACCCGTGATGCCACCCACAAACTCGaa > 1:423306/1‑237 (MQ=38)
cccgcgCGGAGCGTGAAAAAAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTACTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGc < 1:670521/233‑1 (MQ=255)
ccccAGCGGAGGGTAAAAAGAAAGAGGGAAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGc < 1:313096/238‑1 (MQ=255)
ggAGCGTAAAAAAAAAGCCGGCAAAAAAAGGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACttt < 1:135619/238‑1 (MQ=255)
|
CTCTCATACGCTGATTGGCGCGATCATCGGGATTGGTTTAACCAATGCGTTGATGACCGGGACGTCAGTGGTGGATGCACTCAATATCCCGAAAGTATTAAGTATTTTCGGTTCTCTGATCGTTTCCCCTATTGTCGGCCTGGTGTTTGCTGGCGGTCTGATTTTCTTGCTGCGTCGCTACTGGAGCGGCACCA‑AGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCT‑TCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTT > NC_000913/3638001‑3638463
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
