Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F9 I0 R1 86 138.2 2894862 96.7% 2799331 224.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,053,585 T→G 9.6% N419T (AAC→ACC)  pepP ← proline aminopeptidase P II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,053,5850TG 9.6% 319.2 / 3.1 121N419T (AAC→ACC) pepPproline aminopeptidase P II
Reads supporting (aligned to +/- strand):  ref base T (23/84);  new base G (12/2);  total (35/86)
Fisher's exact test for biased strand distribution p-value = 4.20e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 121 total aligned reads displayed.

GTACCCGCCGCCAGCGCTATCGCTCGTCCATCAAAGCCCGGATGAGCATGTGACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCAGTGGCTAAGGCCATGCATAAAGAAAGG‑ACGATGGGCGTTCTGAGC  >  NC_000913/3053352‑3053820
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                            
  aaccgccgCCAGCGCTGTCGCTGGTCAACCAAAGGCGGAATGGGAATGTGCACCTGGCGCAGTAGCTACAATCAATTGTACCGGCCGCCCCCCTC‑GACT‑TACCGGGGAAATAGA‑CAGCCCCAGTGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGtt                                                                                                                                                                                                                                       <  2:268679/237‑1 (MQ=255)
   cccGCCGCCAGCGCTATCGCTCGTCCATCAAAGCCCGGATGAGCATGTGACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGTGGTTTTCGtt                                                                                                                                                                                                                                       >  2:1432418/1‑238 (MQ=255)
   cccGCCGCCAGCGCTATCGCTCGTCCATCAAAGCCCGGATGAGCATGTGACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGtt                                                                                                                                                                                                                                       >  1:288437/1‑238 (MQ=255)
    ccgccgCCAGCGCTATCGCTCGTCCATCAAAGCCCGGATGAGCATGTGACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACTCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTAc                                                                                                                                                                                                                                     <  1:1145460/239‑1 (MQ=255)
         gccAGCGCTATCGCTCGTCCATAAAAGCCCGGATGCGCTTGTGACGCGGGCGCAGCCGCGTCAAGCAAATGTACCGCCGGCGCCGCGT‑GACT‑CAACCGTG‑AATGGCTCGGCGCCAGGGCCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGtt                                                                                                                                                                                                                                <  2:671219/239‑1 (MQ=255)
               gcatccccTCGTCCTCCAAAGCCTGGCGGAGCATGTGACTCGGGCGCGGCCGCTTCACCCAAATGACCCGGCGGCGCCCCGG‑GCCT‑AACCCGGGAAATAGC‑CAGCGCCAGCTCCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGt                                                                                                                                                                                                                           <  2:140855/231‑1 (MQ=255)
               gcTATCGCTCGTCCATCAAAGCCCGGATGAGCATGTGACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGt                                                                                                                                                                                                                           <  1:357069/238‑1 (MQ=255)
                  aTCGCTCGTCCATCAAAGCCCGGATGAGCATGTGACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGGTTTCGCTACAGTGTTCGGTAATc                                                                                                                                                                                                                       >  2:1274939/1‑239 (MQ=255)
                     gCTCGTCCATCAAAGCCCGGATGAGCATGTGATCCTGGCGCAGTCGCTTCAATCAAATGTGCCGGCAGCGCCCCGT‑GTCT‑TAACGGGGAAATGGC‑CAGCGCCGGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATcaca                                                                                                                                                                                                                    <  1:1307875/239‑1 (MQ=255)
                     gCTCGTCCATCAAAGCCCGGATGAGCATGTGACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATcaca                                                                                                                                                                                                                    <  1:950108/239‑1 (MQ=255)
                     gCTCGCCCACCAAAGCCGGGATGAGCATGTGACGCTGGCGCAGCCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATcaca                                                                                                                                                                                                                    <  1:162583/239‑1 (MQ=255)
                     ccccgccaaccAAAGCCGGGATGAGCATGTGACGCTGGCGCAGTCGCTTAAATCAAATGTCCCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCGGCGTCGCCCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATcaca                                                                                                                                                                                                                    <  2:1430098/229‑1 (MQ=255)
                           cacccAAAGCCCGGCTGAGCATGTGACCCTGGCGCGGTCCGTACAATCAAATGCACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATGGC‑CAGCGCCGGCGTCGCGCCCGCCATGCCGACACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATgtc                                                                                                                                                                                                               <  2:136501/234‑1 (MQ=255)
                                  atcccGGATGAGCAGGGGCCGCTGGCGCAGCACCCTAAATCAAAGGTACCGGCAGCGCCCCGT‑GACT‑TACCCGGAAAAGAGC‑CACCGCCAGCTTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCaa                                                                                                                                                                                                       <  2:1044883/237‑1 (MQ=255)
                                      cGGATGAGCATGTGACTCTGGCGCAGTCGCTCCAATAAAATGTACCGGCAGCGCCCCGT‑GACT‑TACCCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACg                                                                                                                                                                                                   <  1:836410/239‑1 (MQ=255)
                                        gATGAGCATGTGACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGGTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGaa                                                                                                                                                                                                 >  1:812624/1‑239 (MQ=255)
                                        gATGAGCATGTGACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTAGCGGTGAGGGTTTCTTTACCTGTTTCGGTAATCACCCTGTCGTCTTCAAttagaa                                                                                                                                                                                                 >  2:659758/1‑234 (MQ=255)
                                                   gACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATAcc                                                                                                                                                                                       >  1:425483/1‑238 (MQ=255)
                                                   gACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACcg                                                                                                                                                                                      <  1:43729/239‑1 (MQ=255)
                                                   gACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACcg                                                                                                                                                                                      <  1:1431578/239‑1 (MQ=255)
                                                        tgccgcaagcGCTGCAATCAAAGGTCCCGGCAGCGCCCCGT‑GCCT‑TAACCGGGAAATAGC‑CAGCCCCAGCTTCCCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGata                                                                                                                                                                                 <  1:1364733/230‑1 (MQ=255)
                                                          gcgcAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGGTTTCGTTACCGGTTTCGGTAATCACAATGTCGGCTTCAATACGAATGCCGATACCGCGATAtt                                                                                                                                                                               >  1:1163407/1‑239 (MQ=255)
                                                           cgcAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTTGGTAATCACAATGTCGTTTTCAATACGAATACCGATACCGCGATATTg                                                                                                                                                                              >  2:428685/1‑239 (MQ=255)
                                                                   tttCAACAAAGTGTACGGGCCGCGCCCCGT‑‑ACTGTAACCGGGAAATCGC‑CAGCGCCGGCGCCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCa                                                                                                                                                                      <  2:635727/238‑1 (MQ=255)
                                                                    ttCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGGTTTCGTTACCGGTTTCGGTAATCACAATGTCGGCTTCAATACGAATGCCGATACCGCGGTATTTTTTTGGCa                                                                                                                                                                      >  2:851165/1‑238 (MQ=255)
                                                                     tcaatcaaATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGGTTTCGTTACCGGTTTCGGTTATCAAAATGTCGTCTTCAATACCAATTCCGATACCGCGATATTTTTCTGTCACt                                                                                                                                                                    >  2:1266077/1‑239 (MQ=255)
                                                                             aggTACCGGCAGCGCCCCGT‑GACT‑TAACCGGAAAATAGC‑CAGCGCCGGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATc                                                                                                                                                            <  1:1352434/237‑1 (MQ=255)
                                                                              tGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATcc                                                                                                                                                           >  1:1344028/1‑239 (MQ=255)
                                                                              tGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGGCGTCTTCAATACGAAAGCCGATACCGCGATATTTTTCTTGCACTTTTGCATc                                                                                                                                                            >  2:1166087/1‑238 (MQ=255)
                                                                               gtcccGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCg                                                                                                                                                          <  1:800519/236‑1 (MQ=255)
                                                                                 cccGGCCACGGCCCGTAGACT‑TAACCGGAAAATACC‑CACCGCGGGCGTGCCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCg                                                                                                                                                          <  2:1150722/237‑1 (MQ=255)
                                                                                 aCCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGGGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCAATTTTGTTATGTCACCTCTGCATTCgg                                                                                                                                                         >  2:983593/1‑238 (MQ=255)
                                                                                  ccgccggcgcCCCGT‑GCCT‑AAACCGGAAAATGGC‑CACGCCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGgcg                                                                                                                                                       <  2:1078389/233‑1 (MQ=255)
                                                                                  ccGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGgcg                                                                                                                                                       <  1:1056386/239‑1 (MQ=255)
                                                                                    ggcggcGCCCCGT‑GACT‑TACCGGGGAAATAGC‑CGGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCa                                                                                                                                                     <  2:1139472/239‑1 (MQ=255)
                                                                                     gCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCaa                                                                                                                                                    >  2:55502/1‑239 (MQ=255)
                                                                                      cAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGCGGTTTTCGTTACCCGCTTCGGTAATCACAATGTCCGCTTCCATACGAATGACGCTACCGCGATATTGTTTCGTCACTTATGCATCCGGCGCAat                                                                                                                                                   >  2:498457/1‑239 (MQ=255)
                                                                                         ccccccGT‑GACT‑TACCCGGGAAAGACC‑CAGCACCCGCGCCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAAtata                                                                                                                                                <  2:885776/237‑1 (MQ=255)
                                                                                          gcCCCGT‑GACT‑TACCCGGGAAAGTGC‑CCGCGCCCGCTTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAAtata                                                                                                                                                <  2:548370/238‑1 (MQ=255)
                                                                                           ccccctggACT‑TACCGGGGAATTGGC‑CGGCGCCGTGTTCGCCCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAAtata                                                                                                                                                <  2:812624/231‑1 (MQ=255)
                                                                                               gT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGccc                                                                                                                                          <  1:1286352/239‑1 (MQ=255)
                                                                                                t‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGGTATTGTTCTTGCACTTCTGCATCCGGCGCAATATACCGc                                                                                                                                            >  1:1066078/1‑236 (MQ=255)
                                                                                                 ggACT‑CAACGGGAAAGTAGC‑CTGCGCCGCGGGCGCGTCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTCCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGccc                                                                                                                                          <  2:288892/237‑1 (MQ=255)
                                                                                                      ttcaCCGGGAAGTCGC‑CGGCGCCAGCGTCGCCCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGct                                                                                                                                     <  2:141134/236‑1 (MQ=255)
                                                                                                        aaCCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGctct                                                                                                                                   <  2:1037675/239‑1 (MQ=255)
                                                                                                          ccGGGAAATTGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATa                                                                                                                                                                                         <  1:1127137/183‑1 (MQ=255)
                                                                                                           cGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACg                                                                                                                                <  1:1166087/239‑1 (MQ=255)
                                                                                                             ggAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGCAGTTTTCGCTTACTGTTTCGGTAATCACCATGTCGTATCCAATACGAATGCCGTTTCCGCGATATTTGTCTGGCCCCTCTTCATCCAGCCCAATAATCCCCCGTGGCTCTACgg                                                                                                                               >  2:205552/1‑238 (MQ=255)
                                                                                                               aaaTGGC‑CAGCGCAAGCGTCCCCCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCa                                                                                                                            <  2:816473/239‑1 (MQ=255)
                                                                                                                  tAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTTGCACTTCTGCATCCGGCGCAATATACAGCCCTCGCTCTACGGTCAgg                                                                                                                          >  2:1119490/1‑237 (MQ=255)
                                                                                                                          cgccggcgTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTTCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGcc                                                                                                                  <  1:267493/239‑1 (MQ=255)
                                                                                                                           gccagcgTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGcc                                                                                                                  <  1:876529/238‑1 (MQ=255)
                                                                                                                           gccagcgTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGcc                                                                                                                  <  1:1183762/238‑1 (MQ=255)
                                                                                                                           gccagcgTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGcc                                                                                                                  <  1:741879/238‑1 (MQ=255)
                                                                                                                                 gTCGCCCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGt                                                                                                              <  1:8111/236‑1 (MQ=255)
                                                                                                                                   cgcgCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCa                                                                                                          <  1:55502/238‑1 (MQ=255)
                                                                                                                                       cccgccATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTTCATCCGGCGCAATATACAGCCCCGGCTCTACGGTCAGTACCATGCCCCGTTTCCGAAt                                                                                                      >  2:1397872/1‑238 (MQ=255)
                                                                                                                                            cATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCGCAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCgcga                                                                                                <  1:1343636/239‑1 (MQ=255)
                                                                                                                                             acgccgccACCTACTATGATTCCCCTCCTTCCTCTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGTCTTTTTCACCACGCTGTCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACTGTCAGTACCATGCCCGGTTCCAGAATGCgcgag                                                                                               <  2:845454/237‑1 (MQ=255)
                                                                                                                                             aTGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCgcgag                                                                                               <  1:302389/239‑1 (MQ=255)
                                                                                                                                             aTGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCgcgag                                                                                               <  1:955520/239‑1 (MQ=255)
                                                                                                                                             aTGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCgcgag                                                                                               <  1:1266077/239‑1 (MQ=255)
                                                                                                                                              tGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCgcgagc                                                                                              <  1:335694/239‑1 (MQ=255)
                                                                                                                                                  gacACCCACGATCATTACGCCCATTCCCTTCTTGCATCATCCACCAACGCTGCCATTTCTTGCGGTTTTTTCATCACGCTGGCCTTGCAGTTTTCGGTACCGGTTTCGGTAATCACAATGTCGTCTTTAATTCGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCGCTGGCGCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGCTc                                                                                          <  2:417385/237‑1 (MQ=255)
                                                                                                                                                     aCCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTg                                                                                       <  1:851165/239‑1 (MQ=255)
                                                                                                                                                       cgacgaTGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGAc                                                                                     <  1:523033/239‑1 (MQ=255)
                                                                                                                                                              gatTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTCTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGACGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGcc                                                                                                                  <  1:1189976/203‑1 (MQ=255)
                                                                                                                                                                 tACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACAcc                                                                           <  2:425483/239‑1 (MQ=255)
                                                                                                                                                                 tACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACAcc                                                                           <  1:427528/239‑1 (MQ=255)
                                                                                                                                                                  aCGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACAccc                                                                          <  1:659758/239‑1 (MQ=255)
                                                                                                                                                                    gCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGCGGTTTTCGTTACCGGCTTCGGGAATCACAAAGTCGTCCTTAATCCGAATGCCGCTAACTTCGTATTGTTCTGGCACTTCTGCACACCGCGCAATATACCACCCTGGCTCTACGGTGCGTACCCTGCCCGGTTCCCGGAAGCGCGAGCGGTCCTGGCCGCAAACAcccc                                                                         >  2:245957/1‑237 (MQ=255)
                                                                                                                                                                      tCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGt                                                                      <  1:756450/239‑1 (MQ=255)
                                                                                                                                                                       cATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGTACTTCTTCATCCCGCGCAATATACAGCCCTGGCTCTACCGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTc                                                                     >  1:547828/1‑239 (MQ=255)
                                                                                                                                                                        aTTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTTTGGCCCTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCCGAATGCGCGAGCGATCCTGACCATAAACCACCACGTCa                                                                    >  1:445640/1‑239 (MQ=255)
                                                                                                                                                                        aTTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTTCATTCGGCGCAATATACAGCCCTTGCTCTACGGTCAGTACCATGCCCGGTTTCAGAATGCGCGAGGGATCCTGACCAaaaaaccccccggca                                                                    >  1:1404210/1‑228 (MQ=255)
                                                                                                                                                                        aTTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGGTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAAAGCCGATACCGCGATATTGTTCTAGCACTTCTGCATCCAGCGCAATATACACCCCTGGCTCTACGGTCAGAACCATGCCCGGTTCCAGAAAGCGCGAACGATCCGGACCATACACCACCACCTc                                                                     >  2:637906/1‑238 (MQ=255)
                                                                                                                                                                         ttGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGGTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCAt                                                                   >  2:426015/1‑239 (MQ=255)
                                                                                                                                                                           gCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATgg                                                                 <  1:1119490/239‑1 (MQ=255)
                                                                                                                                                                           gCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATgg                                                                 <  1:1419364/239‑1 (MQ=255)
                                                                                                                                                                               tctcGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTTGAACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCCTGCCCGGTTCCAGAATGCGCGCGCGATCCCGACCATAAACACCCACGTCATGGCCa                                                              >  2:819066/1‑238 (MQ=255)
                                                                                                                                                                                ctcGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATc                                                            <  1:175186/239‑1 (MQ=255)
                                                                                                                                                                                ctcGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATc                                                            <  1:428685/239‑1 (MQ=255)
                                                                                                                                                                                ctcGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATc                                                            <  1:683580/239‑1 (MQ=255)
                                                                                                                                                                                ctcGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATc                                                            <  1:175078/239‑1 (MQ=255)
                                                                                                                                                                                  cGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCgcgag                                                                                               <  2:1366854/202‑1 (MQ=255)
                                                                                                                                                                                  cGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATcaa                                                          >  1:1276769/1‑237 (MQ=255)
                                                                                                                                                                                  cGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGGTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTCCGGTCAGTACCATGCCCGGTTCCAGAATGCgcgag                                                                                               >  1:1366854/1‑202 (MQ=255)
                                                                                                                                                                                            aTCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCa                                                <  1:1263437/239‑1 (MQ=255)
                                                                                                                                                                                            aTCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCa                                                <  1:375555/239‑1 (MQ=255)
                                                                                                                                                                                            aTCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCa                                                <  2:1344028/239‑1 (MQ=255)
                                                                                                                                                                                            aTCAACGCTTCGATTTCTGCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCa                                                <  2:865619/239‑1 (MQ=255)
                                                                                                                                                                                            aTCAACGCTTCCATTTCTTCCGGCTTTTTCACCACGCTGGCGGTTAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCa                                                <  2:260175/239‑1 (MQ=255)
                                                                                                                                                                                                         tttCTTCGGGCTTTTCCCCCGCGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCAGTGGCTAAGGCCa                                   <  2:947181/239‑1 (MQ=255)
                                                                                                                                                                                                                cGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATAGTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCAGTGGCTAAGGCCATGCATaa                            <  1:1421886/239‑1 (MQ=255)
                                                                                                                                                                                                                             acGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCAGTGGCTAAGGCCATGCATAAAGAAAGG‑ACGATg              <  2:490124/239‑1 (MQ=255)
                                                                                                                                                                                                                              cGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCAGTGGCTAAGGc                                     <  2:475125/216‑1 (MQ=255)
                                                                                                                                                                                                                              cGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCAGTGGCTAAGGc                                     >  1:475125/1‑216 (MQ=255)
                                                                                                                                                                                                                                     ggTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCAGTGGCTAAGGCCATGCATAAAGAAAGG‑ACGATGGGCGTTCt      <  1:546555/239‑1 (MQ=255)
                                                                                                                                                                                                                                        gAGGGTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCAGTGGCTAAGGCCATGCATAAAGAAAGG‑ACGATGGGCGTTCTGa    <  1:1015438/238‑1 (MQ=255)
                                                                                                                                                                                                                                         aGGTTTTCGGTACCGGTTTCGGTAATCACAAAGTAGTCTTCAATAAGAATGCCGCTAACGGGGTATTTTTCTGGCACTTCTGCATTCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTAACATGCCCGGTTTCAGAATGCGCGAGCGGTCCTGTCCCTAAACACCCCCCGCATGGACCACCAGTCCTAACCAAGGGCTAAAGCCATGGCGAAAGAAAGGAACGA‑GGGCGtttcgagg  >  2:657560/1‑233 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                            
GTACCCGCCGCCAGCGCTATCGCTCGTCCATCAAAGCCCGGATGAGCATGTGACTCTGGCGCAGTCGCTTCAATCAAATGTACCGGCAGCGCCCCGT‑GACT‑TAACCGGGAAATAGC‑CAGCGCCAGCGTCGCGCCCGCCATGCCGCCACCGACGATGATTACGCTCATTGCTTTCTCGCAGCAACCATCAACGCTTCGATTTCTTCCGGCTTTTTCACCACGCTGGCGGTGAGGTTTTCGTTACCGGTTTCGGTAATCACAATGTCGTCTTCAATACGAATGCCGATACCGCGATATTGTTCTGGCACTTCTGCATCCGGCGCAATATACAGCCCTGGCTCTACGGTCAGTACCATGCCCGGTTCCAGAATGCGCGAGCGATCCTGACCATAAACACCCACGTCATGGACATCCAGTCCTAACCAGTGGCTAAGGCCATGCATAAAGAAAGG‑ACGATGGGCGTTCTGAGC  >  NC_000913/3053352‑3053820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A