Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F35 I0 R1
|
338 |
60.8 |
3106128 |
78.2% |
2428992 |
142.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
566,535 |
2 bp→CA |
100% |
pseudogene (160‑161/312 nt) |
peaD → |
pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 566,535 | 0 | T | C | 97.6%
| 5893.8
/ 46.6
| 2122 | pseudogene (160/312 nt) | peaD | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base T (28/25); new base C (1101/946); total (1143/979) |
| Fisher's exact test for biased strand distribution p-value = 8.90e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.59e-01 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| * | NC_000913 | 566,536 | 0 | G | A | 97.6%
| 6005.3
/ 42.0
| 2121 | pseudogene (161/312 nt) | peaD | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base G (30/23); new base A (1110/955); total (1142/979) |
| Fisher's exact test for biased strand distribution p-value = 7.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 2122 total aligned reads displayed.
GGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCTGACGCGGAATTACGGCGCAAGGCTGCCGATGAAC‑TGACCTGTATGACAGCGCGAATTAACCGTGGTGAGACGATACCTGAACCAGTAAAACAACTTCCTGTTATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGT > NC_000913/566389‑566681
||
tCCGGATGCGGAGTCTTATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAAtt < 6:257923/148‑1 (MQ=255)
cGGATGCGGAGTCTTATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAAc > 6:44180/1‑149 (MQ=255)
ggATGCGGAGTCTTATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAAcc < 6:66717/149‑1 (MQ=255)
tGCTGAGTCTTATCCGTGGAAATCAAACGCGCACTACTGGCGGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCgtg < 3:352336/149‑1 (MQ=255)
tGCGGAGTCTTATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCgtg < 4:141647/149‑1 (MQ=255)
cggagTCTTATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCgtggt > 7:200370/3‑149 (MQ=255)
ggagTCTTATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACAgtggt > 1:156073/2‑148 (MQ=255)
agagTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCTGACGCGGAATTACGGCGCAAGGCTGCCGATGAAC‑TGACCTGTATGACAGCGCGAATTAACCgtggt > 2:144418/1‑148 (MQ=255)
gTCTTATCCGTGGAAATCAAACGCGCGCTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTgagg < 3:178519/149‑2 (MQ=255)
tCTTATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTgaggc > 7:145278/1‑147 (MQ=255)
ttATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTgaggc > 2:38336/1‑145 (MQ=255)
ttATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGa > 7:313485/1‑149 (MQ=255)
ttATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGa > 1:235666/1‑149 (MQ=255)
aTCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGAtc > 2:169748/1‑148 (MQ=255)
tCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGGGAGGCGagcc > 1:92675/1‑146 (MQ=255)
cGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCt > 4:111038/1‑149 (MQ=255)
cGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCt < 6:202849/149‑1 (MQ=255)
gTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCt > 5:363952/1‑148 (MQ=255)
gTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCt > 1:336432/1‑148 (MQ=255)
gTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTg > 6:114090/1‑149 (MQ=255)
tGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGa < 2:313527/149‑1 (MQ=255)
gAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAGTTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAAc < 8:207586/149‑1 (MQ=255)
gAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAAc < 7:5476/149‑1 (MQ=255)
gAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAAc < 2:56612/149‑1 (MQ=255)
gAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAAc > 8:343071/1‑149 (MQ=255)
caaaTCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTAACTGATCCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAAc < 2:8883/148‑1 (MQ=255)
aaTCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACAGTGGTGAGGCGATCCCTGAAc > 7:388381/1‑147 (MQ=255)
aTCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAg > 1:59385/1‑149 (MQ=255)
aTCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAg > 1:369681/1‑149 (MQ=255)
aTCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAg > 8:315196/1‑149 (MQ=255)
aTCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACAGTGGTGAGGCGATCCCTGAACCAg < 3:265848/149‑1 (MQ=255)
tcaaaCGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAAt > 8:366077/4‑119 (MQ=255)
tcaaaCGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGt < 5:280305/146‑1 (MQ=255)
aCGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTaaaa > 3:328151/1‑149 (MQ=255)
aCGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTaaaa > 8:234286/1‑149 (MQ=255)
aCGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTaaaa > 1:210653/1‑149 (MQ=255)
gcACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGCTCCCTGAACCAGTAAaacaac > 1:101471/1‑149 (MQ=255)
gcACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGaa < 8:75621/136‑1 (MQ=255)
gcACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAaacaac < 6:340485/149‑1 (MQ=255)
ctACTGGCTTGTTACCAACCTGTATCAGCACCTGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGCGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTc < 6:235820/148‑1 (MQ=255)
ctggctggTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCt < 6:87565/148‑1 (MQ=255)
ctggctggTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCt < 8:143788/148‑1 (MQ=255)
ctggctggTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTg < 1:125119/149‑1 (MQ=255)
tggttggtTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCTGACGCGGAATTACGGCGCAAGGCTGCCGATGAAC‑TGACCTGTATGACAGCGCGaa > 4:25234/1‑103 (MQ=255)
gctggttACCAACGTGTATCAGAACTTGCGGGCCATTGCGCTTACTGATGCGGTATTCCGCCGTAAGGCCAAAGATGAGC‑TTGTCCATATGACTGCGAGATTTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCATGtca < 8:498/147‑3 (MQ=255)
gctggttACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGtca < 1:184602/147‑3 (MQ=255)
gctggttACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGtca > 5:307784/3‑147 (MQ=255)
ctggttACCAACCTGTATCAGAACATGCTGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCAt < 2:257233/148‑1 (MQ=255)
tggttACCAACCTGTATCAGACCATGCGGGCCAATGCGCTTACTGAAGCGGAATTACGCCGTAAGGCCGCAGATGAGCTTGTCCAG‑ATGACTGCGAGAATTAACCGAGGAGAGGCGATCCCTGAACCAGTAAAACAACTTCCTCTCATg > 2:124300/1‑149 (MQ=255)
tggttACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATg > 7:95580/1‑149 (MQ=255)
gttACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAAc > 5:86195/1‑124 (MQ=255)
gttACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATggg < 3:208531/149‑1 (MQ=255)
ccAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGAtcc < 5:248820/114‑3 (MQ=255)
ccAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCgg < 4:84379/148‑1 (MQ=255)
ccAACCGGTATCAGAACCTGCGGGCCAATGCGCGTACTGATGCGGAATTACGCCGTAAGGCCGCAGAAGAGC‑TTGTCCATATGACTGCGATAATTAACCGTGGGGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGt < 4:306797/149‑1 (MQ=255)
cAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGCCTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCgg > 2:330535/1‑147 (MQ=255)
cAACCTGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTa < 7:73218/149‑1 (MQ=255)
aaCCTGTATCAGAACATGCGGGCCAATGCTCTTACTGATGCTGAAATACGCCTTAAGGCAGCAGATGATC‑TTGTCCATATGAATGATAGAATTAACCTTGGTTAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAg < 5:333511/149‑1 (MQ=255)
cctGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGAc < 7:231735/147‑1 (MQ=255)
cctGTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGAc < 4:34036/147‑1 (MQ=255)
gTATCAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACctc > 7:111879/1‑149 (MQ=255)
tcAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGCCC‑TTGTCCATATGACTGCGAGCATTAACCGTGGGGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTa > 3:42706/2‑148 (MQ=255)
tcAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGCTCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTa > 1:306488/2‑148 (MQ=255)
tcAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTa > 5:113166/2‑148 (MQ=255)
cAGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTaaa > 4:201300/1‑149 (MQ=255)
aGAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGGGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTaaa < 5:53731/148‑1 (MQ=255)
gAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATc > 6:317795/1‑149 (MQ=255)
gAACATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATc < 1:281404/149‑1 (MQ=255)
aCATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGt < 4:174683/149‑1 (MQ=255)
aCATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGACCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGt < 3:234889/149‑1 (MQ=255)
cATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTg < 5:167707/149‑1 (MQ=255)
cATGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTg < 2:202987/149‑1 (MQ=255)
aTGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGGGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGt > 5:197100/1‑147 (MQ=255)
tGCGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGca < 8:179595/149‑1 (MQ=255)
cGGGCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGcaca < 8:115475/149‑1 (MQ=255)
gggCCAATGCGCTTACTGATTCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAg < 6:287016/149‑1 (MQ=255)
aaTGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGctct < 3:301587/149‑1 (MQ=255)
aTGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTg > 5:146511/1‑149 (MQ=255)
tGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCTATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTgg < 3:147827/149‑1 (MQ=255)
cgcttactgATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGc < 5:21869/142‑1 (MQ=255)
cgcttactgATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCAATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCg < 4:223003/143‑1 (MQ=255)
cgcttactgATGCGGAATTACGCCGTAAGGCCGCACATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCAGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGc > 4:49240/7‑148 (MQ=255)
cttactgATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCg > 1:258878/5‑147 (MQ=255)
cttactgATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGaa < 3:86087/145‑1 (MQ=255)
cttactgATGAGGAATTACGCAGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGAGGTGAGCCGATCCCTCAACAAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATAGTGAACACGCTCAGGCg > 4:280104/5‑147 (MQ=255)
actgATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTcc < 7:283003/100‑1 (MQ=255)
actgATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGa < 7:331289/147‑1 (MQ=255)
tgATGCGGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCg > 2:237517/1‑126 (MQ=255)
gatgcgGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATGTGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCg > 1:390860/4‑148 (MQ=255)
atgcgGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCg > 8:296757/3‑147 (MQ=255)
atgcgGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCa < 2:277136/147‑1 (MQ=255)
atgcgGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCa < 7:258116/147‑1 (MQ=255)
atgcgGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCa < 3:122300/147‑1 (MQ=255)
atgcgGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCa < 6:369222/147‑1 (MQ=255)
atgcgGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCa < 6:172373/147‑1 (MQ=255)
gcgGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGCTCGCAg > 8:262616/1‑148 (MQ=255)
gcgGAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAg > 7:16338/1‑148 (MQ=255)
ggAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGaaa > 7:358976/1‑149 (MQ=255)
ggAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGaaa < 2:355143/149‑1 (MQ=255)
ggAATTACGCCGTAAGGCCGCAGATGAGC‑TTGTCCATATGACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGa > 6:147889/1‑147 (MQ=255)
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GGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCTGACGCGGAATTACGGCGCAAGGCTGCCGATGAAC‑TGACCTGTATGACAGCGCGAATTAACCGTGGTGAGACGATACCTGAACCAGTAAAACAACTTCCTGTTATGGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGT > NC_000913/566389‑566681
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
