Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F36 I0 R1
|
80 |
95.4 |
3476014 |
97.7% |
3396065 |
133.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,182,929 |
A→T |
100% |
E562V (GAA→GTA) |
rpoB → |
RNA polymerase, beta subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,182,929 | 0 | A | T | 95.1%
| 337.7
/ 5.2
| 101 | E562V (GAA→GTA) | rpoB | RNA polymerase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base A (2/3); new base T (51/45); total (53/48) |
| Fisher's exact test for biased strand distribution p-value = 6.66e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 103 total aligned reads displayed.
TTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCTGTCTGC > NC_000913/4182784‑4183067
|
tttATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGaaa > 3:16225/1‑148 (MQ=255)
ttATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGtaa < 6:211378/147‑1 (MQ=255)
ggACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCt > 1:152005/1‑148 (MQ=255)
gACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCt > 3:268838/1‑147 (MQ=255)
gACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCt > 4:263986/1‑147 (MQ=255)
aGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAgg > 7:47121/1‑148 (MQ=255)
acaacCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGt > 8:189122/1‑146 (MQ=255)
acCCGCTGTCTGATATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGa < 5:94590/139‑1 (MQ=255)
acCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGaa > 3:385768/1‑148 (MQ=255)
cccGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGATACGTACACACGACTCAATACGGTCGCGTATTTCAAATCGTAACCCCTGAAgagatatg > 6:94590/1‑140 (MQ=255)
cccGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGaa > 1:323886/1‑147 (MQ=255)
tCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGACCAGGCGGTCTGACCCGGGAACTTTCAGGATTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCgg < 5:430556/146‑1 (MQ=255)
cTGAGATTACGCACAAACGTCGTATCTCCGCACACGGCCCAGGCGGTCTGCCCCGTGAACGTGCAGGCTTCGAAGTTCGAGCCGTACAACAGACTCACTACCGTCGCGTATGTCCAATCGTAACCCCTGAAGTTCCGAACATCGGTCt > 5:223790/1‑148 (MQ=255)
tGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCTCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCt > 8:142406/1‑147 (MQ=255)
agaTTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGACTGACCCGTGAAAGAGCATGCTTCGAAGTTCGACACATACACCCGACTCACTACGGTCGAGTATGTCCAATCGTAACCCATGAAGGTCCGAACATCGGtatta > 2:66355/1‑143 (MQ=255)
aTTACGCACAACCGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGATCGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTAGGTCCAATCGTAACCCCGGAAGGTCCGACCATCGGTCGGagc > 8:161331/1‑145 (MQ=255)
ttACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGCACGTGCAGGCTTCGAAGTTCGAGCCGGACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCaa < 2:131233/148‑1 (MQ=255)
tACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCTCGTATGTCCAATCGTAACCCCTGa > 8:160475/1‑123 (MQ=255)
tACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGa < 7:160475/123‑1 (MQ=255)
tACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAAc > 1:59015/1‑148 (MQ=255)
cacaAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAATATCgg > 3:188084/1‑134 (MQ=255)
cacaAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAATATCgg < 4:188084/134‑1 (MQ=255)
caAACGTCGTATCTCCGCACTCGGCACATGCGGTCTGACACGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCCTATGTCCAATCGAAACCCCATAAGCTCCGAACAACTGTCTGATCAACTCTCTg > 5:325660/1‑148 (MQ=255)
aaCGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGa > 7:234352/1‑115 (MQ=255)
aaCGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGa < 8:234352/115‑1 (MQ=255)
aaCGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTc < 4:180691/148‑1 (MQ=255)
cgtcgtATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCg < 8:175955/148‑1 (MQ=255)
tATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTAc < 8:47121/148‑1 (MQ=255)
aTCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCAGTGTACg > 4:70305/1‑148 (MQ=255)
ctcCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGc < 2:323886/147‑1 (MQ=255)
ccGCACTCGGCCCAGGCGGTCTTACACGTGAACGTGCAGGCTTCGAAGTTCGAGACGAACACCCGACTCACTACGGTCGCGTATGTCAAATCGTAACCCCTGAAGGTCCGAACATCTGTCTGCACAACTCTCTGTCCGTGTACGcaca > 7:261680/1‑148 (MQ=255)
ccGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGca > 3:275212/1‑146 (MQ=255)
cGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGcac < 1:243684/146‑1 (MQ=255)
cGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGcac < 2:59015/146‑1 (MQ=255)
cGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGcac < 5:336745/146‑1 (MQ=255)
cGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACACGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGc < 3:263986/144‑1 (MQ=255)
cACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGAc > 7:13418/1‑148 (MQ=255)
cGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGCCTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAAc > 7:385781/1‑148 (MQ=255)
ggCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTaa < 1:384706/146‑1 (MQ=255)
ggCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTaa < 7:204339/146‑1 (MQ=255)
ggCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACg < 5:176547/148‑1 (MQ=255)
gctcAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGa < 7:142406/145‑1 (MQ=255)
ccAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGaa > 8:272703/1‑147 (MQ=255)
ccAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAAt < 4:385768/148‑1 (MQ=255)
ccAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAAt < 4:16225/148‑1 (MQ=255)
ccAGGCGGTCTGACCCGTGAACGTGCAGGATTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCTTATGTCCAATCGTAACCCCTTAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAAt < 7:384037/148‑1 (MQ=255)
cAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATa < 7:189122/148‑1 (MQ=255)
cAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATa > 4:342652/1‑148 (MQ=255)
ggCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACg > 8:34779/1‑148 (MQ=255)
gCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTACCCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACgg > 7:432086/1‑148 (MQ=255)
gTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCtt > 6:54693/1‑148 (MQ=255)
tCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCa < 3:116766/107‑1 (MQ=255)
tCTGACCCGAGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCa > 4:116766/1‑107 (MQ=255)
gcTGACCCGTGAACGTGCAGGCTTCGAAGTCCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTc < 8:385781/147‑1 (MQ=255)
cTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTcc > 1:419717/1‑148 (MQ=255)
gACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCtt > 3:314385/1‑148 (MQ=255)
aCCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTa < 3:165095/130‑1 (MQ=255)
aCCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTa > 4:165095/1‑130 (MQ=255)
aCCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTg < 2:17625/148‑1 (MQ=255)
aCCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTg < 4:268838/148‑1 (MQ=255)
cccGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCa < 5:41380/102‑1 (MQ=255)
cccGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCa > 6:41380/1‑102 (MQ=255)
cccGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCtt > 3:23911/1‑146 (MQ=255)
cccGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCtt > 2:68618/1‑146 (MQ=255)
cGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCg > 5:283253/1‑147 (MQ=255)
gCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCgtgt < 3:142656/106‑1 (MQ=255)
gCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCgtgt > 4:142656/1‑106 (MQ=255)
gCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTaa < 2:152005/148‑1 (MQ=255)
gCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGACCATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTaa < 3:338975/148‑1 (MQ=255)
cTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCtt > 4:129635/1‑130 (MQ=255)
cTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCtt < 3:129635/130‑1 (MQ=255)
cTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTaaa > 4:186218/1‑148 (MQ=255)
cTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTaaa < 4:275212/148‑1 (MQ=255)
tCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGt > 8:121316/1‑148 (MQ=255)
tCGAAGTTAGATACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCTTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCATGAGACTCCGTATCGTaaa > 1:311373/1‑146 (MQ=255)
gAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGa < 4:314385/148‑1 (MQ=255)
ttCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGa > 2:121037/1‑148 (MQ=255)
gagaCGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACgg < 3:70305/148‑1 (MQ=255)
gTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGtgttg < 3:342652/148‑1 (MQ=255)
tACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTaaa > 2:329676/1‑131 (MQ=255)
tACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTaaa < 1:329676/131‑1 (MQ=255)
cacCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTa < 6:283253/147‑1 (MQ=255)
ccGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGGACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATAGTAAAGTGACCGACCGTGTTGTAACt > 5:210887/1‑147 (MQ=255)
cGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTaaa < 7:325637/125‑1 (MQ=255)
cGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTaaa > 8:325637/1‑125 (MQ=255)
cGACTCACAACGGTCGCGAATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCACCTCTCTCTCCGTGTACGCACACACGAACGAATACGGGTTCCTTGCGACTCCGTATCGTAAATTGCCCCACGGTGTTGTAACTGa > 6:181742/1‑148 (MQ=255)
aCTACGGTCGCGTATGTACAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAAt < 7:392348/148‑1 (MQ=255)
cTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAAtt > 8:106435/1‑148 (MQ=255)
cTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAAtt < 3:186218/148‑1 (MQ=255)
tACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTaa < 7:6287/136‑1 (MQ=255)
tACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAAtt > 4:299667/1‑147 (MQ=255)
cGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTc < 5:54693/146‑1 (MQ=255)
cGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTc < 4:178048/146‑1 (MQ=255)
cgcgTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTACCGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTAcc > 5:112802/1‑148 (MQ=255)
aTGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGcac > 6:422406/1‑65 (MQ=255)
aTGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGcac < 5:422406/65‑1 (MQ=255)
tGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCTGTCTg < 1:68618/148‑1 (MQ=255)
tCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCTGTCTGc > 2:195561/1‑147 (MQ=255)
ccAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTAc > 5:361221/1‑138 (MQ=255)
ccAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTAc < 6:361221/138‑1 (MQ=255)
|
TTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCTGTCTGC > NC_000913/4182784‑4183067
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTCAGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCTGTCTGCTATCGAAGAAG > NC_000913/4182779‑4183078
|
CTCAGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGCCCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGT > NB501016:230:HFVJLAFXY:4:11604:3706:11008/1‑151 (MQ=60)
aaccacgcagcgttacctgatgtgacgccgacaattctcatcatcgctacATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAAC < NB501016:230:HFVJLAFXY:1:21306:10901:9035/101‑1 (MQ=60)
AGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGATACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAAC > NB501016:230:HFVJLAFXY:2:11103:24151:16826/1‑151 (MQ=60)
AGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAAC < NB501016:230:HFVJLAFXY:3:21509:21032:2542/151‑1 (MQ=60)
GTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGATTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACC < NB501016:230:HFVJLAFXY:3:11401:10564:2086/151‑1 (MQ=60)
ATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTG > NB501016:230:HFVJLAFXY:1:11301:2439:7471/1‑151 (MQ=60)
TGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTG > NB501016:230:HFVJLAFXY:2:21111:2616:18081/1‑150 (MQ=60)
CCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGT > NB501016:230:HFVJLAFXY:4:11408:5805:6289/1‑151 (MQ=60)
CAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTC > NB501016:230:HFVJLAFXY:2:21309:5063:12028/1‑151 (MQ=60)
CAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAAC > NB501016:230:HFVJLAFXY:2:21308:2115:8581/1‑151 (MQ=60)
AACCCGCTGTCTGATATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAG < NB501016:230:HFVJLAFXY:3:11505:14390:1032/142‑1 (MQ=60)
AACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGACC > NB501016:230:HFVJLAFXY:1:21204:5597:15891/1‑150 (MQ=60)
GTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGACCAGGCGGTCTGACCCGGGAACTTTCAGGATTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTC < NB501016:230:HFVJLAFXY:3:21612:11772:14394/149‑1 (MQ=60)
GTCTGAGATTACGCACAAACGTCGTATCTCCGCACACGGCCCAGGCGGTCTGCCCCGTGAACGTGCAGGCTTCGAAGTTCGAGCCGTACAACAGACTCACTACCGTCGCGTATGTCCAATCGTAACCCCTGAAGTTCCGAACATCGGTCTG > NB501016:230:HFVJLAFXY:3:21402:10958:2779/1‑151 (MQ=60)
ATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACT > NB501016:230:HFVJLAFXY:1:11109:9171:16408/1‑151 (MQ=60)
ATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAG < NB501016:230:HFVJLAFXY:4:11601:4514:19398/127‑1 (MQ=60)
CGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAATATCGGTC > NB501016:230:HFVJLAFXY:2:11309:15910:17374/1‑138 (MQ=60)
CACAAACGTCGTATCTCCGCACTCGGCACATGCGGTCTGACACGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCCTATGTCCAATCGAAACCCCATAAGCTCCGAACAACTGTCTGATCAACTCTCTGT > NB501016:230:HFVJLAFXY:3:21507:11445:19306/1‑151 (MQ=60)
CAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAG > NB501016:230:HFVJLAFXY:4:21402:24629:5016/1‑119 (MQ=60)
CTCCGCACTCGGCCCAGGCGGTCTTACACGTGAACGTGCAGGCTTCGAAGTTCGAGACGAACACCCGACTCACTACGGTCGCGTATGTCAAATCGTAACCCCTGAAGGTCCGAACATCTGTCTGCACAACTCTCTGTCCGTGTACGCACAC > NB501016:230:HFVJLAFXY:4:21406:7504:11741/1‑151 (MQ=60)
CTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACCTCGGTCTGATCAACTCTCTGTCCGTGTACGCAC > NB501016:230:HFVJLAFXY:2:21201:8218:2891/1‑149 (MQ=60)
CCGCACTCGGCCCAGGCTGTCTGACACGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACACGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCAC < NB501016:230:HFVJLAFXY:2:21110:5260:20209/147‑1 (MQ=60)
CCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAG < NB501016:230:HFVJLAFXY:1:21103:18265:19782/149‑1 (MQ=60)
CCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAG < NB501016:230:HFVJLAFXY:3:21509:18031:16747/149‑1 (MQ=60)
CGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACT > NB501016:230:HFVJLAFXY:4:11403:14162:3959/1‑151 (MQ=60)
CTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGCCTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACG > NB501016:230:HFVJLAFXY:4:21602:10296:19969/1‑151 (MQ=60)
CGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAA < NB501016:230:HFVJLAFXY:3:11606:6883:9783/151‑1 (MQ=60)
CGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACG < NB501016:230:HFVJLAFXY:4:11609:1787:5300/149‑1 (MQ=60)
CGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACG < NB501016:230:HFVJLAFXY:1:21303:10502:1662/149‑1 (MQ=60)
GGCTCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAAT < NB501016:230:HFVJLAFXY:4:11511:1712:2833/151‑1 (MQ=60)
CCCAGGCGGTCTGACCCGTGAACGTGCAGGATTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCTTATGTCCAATCGTAACCCCTTAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATAC < NB501016:230:HFVJLAFXY:4:21602:1500:14602/151‑1 (MQ=60)
CCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACG < NB501016:230:HFVJLAFXY:4:11606:2259:14043/151‑1 (MQ=60)
AGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTACCCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCCCAGACTAACGAATACGGC > NB501016:230:HFVJLAFXY:4:21610:13426:16456/1‑151 (MQ=60)
GGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAAC < NB501016:230:HFVJLAFXY:2:11209:4341:19141/111‑1 (MQ=60)
GTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCT > NB501016:230:HFVJLAFXY:1:21308:23194:16269/1‑151 (MQ=60)
CTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTG > NB501016:230:HFVJLAFXY:2:21208:7031:4766/1‑151 (MQ=60)
acACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCACTGTCCGTGTACGCACAGACTAACGAAAACGGATTCCTTG > NB501016:230:HFVJLAFXY:3:21510:4078:6546/3‑150 (MQ=60)
TGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAAC < NB501016:230:HFVJLAFXY:2:11306:11275:3535/134‑1 (MQ=60)
GACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTG > NB501016:230:HFVJLAFXY:2:11105:23176:5339/1‑149 (MQ=60)
GACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAAC < NB501016:230:HFVJLAFXY:3:11408:5040:3132/106‑1 (MQ=60)
AACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGT > NB501016:230:HFVJLAFXY:3:21411:14505:18013/1‑150 (MQ=60)
GTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTAC < NB501016:230:HFVJLAFXY:2:11302:23191:8985/110‑1 (MQ=60)
GGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGA < NB501016:230:HFVJLAFXY:2:11212:18047:5443/134‑1 (MQ=60)
GGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGACCATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAG < NB501016:230:HFVJLAFXY:2:21212:14138:11834/151‑1 (MQ=60)
CTTCGAAGTTAGATACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCTTAACCCCTGAAGGTCCGAACATAGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCATGAGACTCCGTATCGTAAAG > NB501016:230:HFVJLAFXY:1:21202:8714:14384/1‑149 (MQ=60)
CGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTG < NB501016:230:HFVJLAFXY:2:11201:6433:12499/151‑1 (MQ=60)
CGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTA < NB501016:230:HFVJLAFXY:2:21301:13778:5033/151‑1 (MQ=60)
CGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGT < NB501016:230:HFVJLAFXY:1:21205:7725:15382/135‑1 (MQ=60)
ACCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGGACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATAGTAAAGTGACCGACCGTGTTGTAACTG > NB501016:230:HFVJLAFXY:3:11611:15779:17361/1‑150 (MQ=60)
CCCGACTCACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGT < NB501016:230:HFVJLAFXY:4:21505:25499:3057/129‑1 (MQ=60)
CACTACGGTCGCGTATGTACAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTC < NB501016:230:HFVJLAFXY:4:21604:4271:2333/151‑1 (MQ=60)
ACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCA < NB501016:230:HFVJLAFXY:2:11309:1956:11655/151‑1 (MQ=60)
ACTACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACT < NB501016:230:HFVJLAFXY:4:11402:17702:1402/140‑1 (MQ=60)
ACGGTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCAC < NB501016:230:HFVJLAFXY:3:11410:8529:8060/149‑1 (MQ=60)
GTCGCGTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTACCGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCT > NB501016:230:HFVJLAFXY:3:11508:5822:3019/1‑151 (MQ=60)
GTATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAG < NB501016:230:HFVJLAFXY:3:21611:1467:9433/69‑1 (MQ=60)
ATGTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCTGTCTGCT < NB501016:230:HFVJLAFXY:1:11111:8698:7657/151‑1 (MQ=60)
GTCCAATCGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCT > NB501016:230:HFVJLAFXY:3:21601:14277:18019/1‑142 (MQ=60)
CGTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCTGTCTGCTATCGAAGAA < NB501016:230:HFVJLAFXY:1:11208:10425:3690/151‑1 (MQ=60)
GTAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCTGTCTGCTATCGAAGAAG < NB501016:230:HFVJLAFXY:4:11406:15467:9250/151‑1 (MQ=60)
|
CTCAGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTACCTGTCTGCTATCGAAGAAG > NC_000913/4182779‑4183078
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
