Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F11 I1 R1
|
15 |
43.1 |
1622188 |
96.5% |
1565411 |
127.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,820,792 |
T→C |
D407G (GAC→GGC) |
alaS ← |
alanyl‑tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,820,792 | 0 | T | C | 86.0%
| 127.9
/ 10.2
| 50 | D407G (GAC→GGC) | alaS | alanyl‑tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base T (4/3); new base C (21/22); total (25/25) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAACTGCTCTTCTT > NC_000913/2820646‑2820924
|
aTGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCa > 4:184663/1‑149 (MQ=255)
tGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCaa > 5:66303/1‑149 (MQ=255)
acacGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGcc < 5:106232/149‑1 (MQ=255)
acGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCa > 3:43972/1‑148 (MQ=255)
ggATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAg < 6:129760/149‑1 (MQ=255)
aTTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTc > 5:51285/1‑149 (MQ=255)
ttGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCg < 6:66303/149‑1 (MQ=255)
cGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTa > 7:82792/1‑148 (MQ=255)
gTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAAc < 6:36717/126‑1 (MQ=255)
gTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAAc > 5:36717/1‑126 (MQ=255)
ggCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGaaa < 7:86492/148‑1 (MQ=255)
cACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCa < 4:43972/149‑1 (MQ=255)
aaaGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGtt > 6:24803/1‑148 (MQ=255)
aaaGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGtt < 5:24803/148‑1 (MQ=255)
aGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCa < 3:30917/149‑1 (MQ=255)
ccGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAg < 2:210693/120‑1 (MQ=255)
ccGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAg < 2:207491/120‑1 (MQ=255)
ccGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAg > 1:210693/1‑120 (MQ=255)
ccGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAg > 1:207491/1‑120 (MQ=255)
ttCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGc > 2:113977/1‑148 (MQ=255)
cgcgcgcgcgACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGc < 1:113977/146‑1 (MQ=255)
gcgcgcgcgACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTa > 1:14036/1‑117 (MQ=255)
gcgcgcgcgACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTa < 2:14036/117‑1 (MQ=255)
cgcgcgACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCAc < 2:212572/149‑1 (MQ=255)
gctgctCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGCCGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGtttt > 3:138473/1‑149 (MQ=255)
gctgctCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGtttt < 8:82792/149‑1 (MQ=255)
gctCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGc > 2:62344/1‑148 (MQ=255)
ttCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAg < 1:62344/147‑1 (MQ=255)
tCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGctc > 2:163400/1‑149 (MQ=255)
aTTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCtt > 8:42227/1‑148 (MQ=255)
cTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCATATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGc < 3:184663/149‑1 (MQ=255)
ttCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGtttt > 6:76933/1‑130 (MQ=255)
tCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCaa > 5:146191/1‑149 (MQ=255)
aaaCCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGc < 1:163400/149‑1 (MQ=255)
cTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCa > 6:35872/1‑92 (MQ=255)
cTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCa < 5:35872/92‑1 (MQ=255)
tCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTc < 6:146191/149‑1 (MQ=255)
tCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTc > 4:6739/1‑149 (MQ=255)
cTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCaga < 3:6739/149‑1 (MQ=255)
cgcTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCaaa < 7:42227/149‑1 (MQ=255)
gcTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCaaa > 4:120374/1‑148 (MQ=255)
gcTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCaaa < 3:120374/148‑1 (MQ=255)
gcTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAAc < 6:51285/149‑1 (MQ=255)
tCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGAACAGACGCAAAGAAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAACTg > 7:54281/1‑149 (MQ=255)
aCATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAACTGCTcttctt > 5:42912/1‑148 (MQ=255)
cATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAACTGCTcttctt > 6:93927/1‑147 (MQ=255)
aTCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGa < 7:22192/112‑1 (MQ=255)
aTCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGa > 8:22192/1‑112 (MQ=255)
aGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCa < 2:64807/119‑1 (MQ=255)
aGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCa > 1:64807/1‑119 (MQ=255)
|
ATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAACTGCTCTTCTT > NC_000913/2820646‑2820924
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAACTGCTCTTCTTC > NC_000913/2820646‑2820925
|
ATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAAC > NB501016:228:HFK2FAFXY:3:11511:20470:5500/1‑151 (MQ=60)
AACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCA < NB501016:228:HFK2FAFXY:3:11612:11087:6696/151‑1 (MQ=60)
CACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCAT > NB501016:228:HFK2FAFXY:2:11206:22718:12382/1‑150 (MQ=60)
CATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCG > NB501016:228:HFK2FAFXY:3:11506:10058:5864/1‑151 (MQ=60)
GCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTAC > NB501016:228:HFK2FAFXY:4:11608:14932:14691/1‑150 (MQ=60)
CGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACC > NB501016:228:HFK2FAFXY:3:11501:10334:8143/1‑128 (MQ=60)
CGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAG < NB501016:228:HFK2FAFXY:4:11610:11370:5780/150‑1 (MQ=60)
CAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTT < NB501016:228:HFK2FAFXY:3:11409:16149:8234/150‑1 (MQ=60)
AAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCAC < NB501016:228:HFK2FAFXY:2:11201:10169:8727/151‑1 (MQ=60)
GCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCACCTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGG > NB501016:228:HFK2FAFXY:1:21307:26750:1412/1‑122 (MQ=60)
GCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGG > NB501016:228:HFK2FAFXY:1:21306:1164:1437/1‑122 (MQ=60)
TCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCG < NB501016:228:HFK2FAFXY:1:11312:7197:12378/148‑1 (MQ=60)
CGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTAC > NB501016:228:HFK2FAFXY:1:11105:2291:6380/1‑119 (MQ=60)
cgtgtgcttcttccgatctCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTG < NB501016:228:HFK2FAFXY:3:11602:22300:15198/132‑1 (MQ=60)
CGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGCCGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTG > NB501016:228:HFK2FAFXY:2:21207:15074:4624/1‑151 (MQ=60)
CTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGC < NB501016:228:HFK2FAFXY:1:11208:15411:6369/149‑1 (MQ=60)
GCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCATATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCA < NB501016:228:HFK2FAFXY:2:21312:21177:9010/151‑1 (MQ=60)
TTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAAC > NB501016:228:HFK2FAFXY:3:21502:22604:5631/1‑151 (MQ=60)
AAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCC < NB501016:228:HFK2FAFXY:1:21204:24093:2805/151‑1 (MQ=60)
GCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCAC < NB501016:228:HFK2FAFXY:3:11501:6041:2465/94‑1 (MQ=60)
ACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAG < NB501016:228:HFK2FAFXY:2:11103:3338:13009/151‑1 (MQ=60)
GCGCTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAAC < NB501016:228:HFK2FAFXY:4:11504:18530:8318/151‑1 (MQ=60)
CGCTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAAC < NB501016:228:HFK2FAFXY:2:21111:22619:12829/150‑1 (MQ=60)
CTCACGACAAACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGAACAGACGCAAAGAAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAACTGC > NB501016:228:HFK2FAFXY:4:11509:10003:6659/1‑151 (MQ=60)
AACATCAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAACTGCTCTTCTTC > NB501016:228:HFK2FAFXY:3:11503:7803:9810/1‑150 (MQ=60)
CATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGAC < NB501016:228:HFK2FAFXY:4:11409:7047:2397/114‑1 (MQ=60)
CAGCCGTCAGGCCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAG > NB501016:228:HFK2FAFXY:1:11209:13312:2085/1‑121 (MQ=60)
|
ATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCTTCGTCAACTTTGATGTTGCGCTCACGACAAACATCAGCCGTCAGGTCAACCGGGAAGCCATAGGTGTCGTACAGACGGAAAGCAGTTTCACCATCCAGCGTATCACCAGAAAGTTTTGCCAGCTCTTCATCCAGCAACGCCAGACCGCGCTCCAGAGTACGAGCAAACTGCTCTTCTTC > NC_000913/2820646‑2820925
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
