Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
66 |
46.7 |
5280542 |
98.1% |
5180211 |
47.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_017635 |
2,407,182 |
Δ1 bp |
coding (15/1011 nt) |
mglC ← |
galactose/methyl galactoside ABC transporter permease MglC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_017635 | 2,407,182 | 0 | A | . | 100.0%
| 431.4
/ NA
| 88 | coding (15/1011 nt) | mglC | galactose/methyl galactoside ABC transporter permease MglC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (18/70); total (18/70) |
ACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCA > NC_017635/2407138‑2407222
|
acgTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTtttta < 2:205906/48‑2 (MQ=255)
gTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAAc > 2:1213169/1‑48 (MQ=39)
gTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAAc < 1:2296630/48‑1 (MQ=39)
gTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAAc < 2:1446980/48‑1 (MQ=39)
gTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAAc < 1:2631785/48‑1 (MQ=39)
gTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAAc > 1:550544/1‑48 (MQ=39)
aaaTACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACg > 1:771832/1‑47 (MQ=39)
aaTACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCa < 1:446717/48‑1 (MQ=39)
aaTACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCa < 2:870152/48‑1 (MQ=39)
aaTACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCa < 1:200031/48‑1 (MQ=39)
aTACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCAc < 1:824062/48‑1 (MQ=39)
aTACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCAc > 1:1748487/1‑48 (MQ=39)
aTACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCAc > 1:2011746/1‑48 (MQ=39)
tACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACt > 2:938750/1‑48 (MQ=39)
ccGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTc < 1:602867/47‑1 (MQ=39)
ccGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTc < 1:1185946/47‑1 (MQ=39)
ccGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTc < 1:114765/47‑1 (MQ=39)
ccGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCa < 2:2047106/48‑1 (MQ=39)
gCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATg < 2:1012281/48‑1 (MQ=39)
gCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATg < 2:146856/48‑1 (MQ=39)
gCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATg < 1:1545483/48‑1 (MQ=39)
cccTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATgg < 2:1434743/48‑1 (MQ=39)
ttCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc > 1:1604017/1‑48 (MQ=255)
ttCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc > 2:597807/1‑48 (MQ=255)
ttCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc > 2:2332590/1‑48 (MQ=255)
ttCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc > 2:370550/1‑48 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAg < 2:310674/45‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAg < 2:59419/45‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc < 1:298617/47‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc < 1:1883203/47‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc < 2:1915900/47‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc < 2:1270238/47‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc < 1:863720/47‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc < 2:1073895/47‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc < 1:985334/47‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcc < 1:1292895/47‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGc < 2:363027/46‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGc < 2:650395/46‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGc < 2:160028/46‑1 (MQ=255)
tCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGc < 2:360736/46‑1 (MQ=255)
cAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGccc < 2:1612089/47‑1 (MQ=255)
cAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGccc < 2:1583116/47‑1 (MQ=255)
cAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGccc < 1:1003425/47‑1 (MQ=255)
cAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGccc < 1:640844/47‑1 (MQ=255)
cAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGccc < 1:967477/47‑1 (MQ=255)
cAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGccc < 1:854487/47‑1 (MQ=255)
cAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGccc < 2:2284870/47‑1 (MQ=255)
cAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGccc < 1:2550808/47‑1 (MQ=255)
cAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGccc < 1:572368/47‑1 (MQ=255)
aGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGcccc < 2:1844033/47‑1 (MQ=255)
aGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCt < 1:657792/48‑1 (MQ=255)
ggTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTa < 2:2264793/48‑1 (MQ=255)
ggTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTa < 1:1333441/48‑1 (MQ=255)
ggTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTa < 1:1478226/48‑1 (MQ=255)
ggTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTa < 1:209682/48‑1 (MQ=255)
ggTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTa < 2:2243373/48‑1 (MQ=255)
ggTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTa < 2:1003680/48‑1 (MQ=255)
gtaagtaaGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTaa < 2:1423051/48‑1 (MQ=255)
gtaagtaaGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTaa < 1:2038358/48‑1 (MQ=255)
gtaagtaaGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTaa < 2:2440336/48‑1 (MQ=255)
taagtaagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAt < 2:1032610/48‑1 (MQ=255)
taagtaagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAt < 2:1908099/48‑1 (MQ=255)
taagtaagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAt < 1:1333918/48‑1 (MQ=255)
taagtaagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAt < 1:1344586/48‑1 (MQ=255)
taagtaagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAt < 1:1989998/48‑1 (MQ=255)
taagtaagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAt < 1:37113/48‑1 (MQ=255)
taagtaagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAt < 1:680615/48‑1 (MQ=255)
taagtaagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAt < 1:684956/48‑1 (MQ=255)
agtaagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATc < 1:2214563/47‑1 (MQ=255)
taagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCtt > 2:2310385/1‑47 (MQ=255)
aagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTa > 1:1028674/1‑47 (MQ=255)
aagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTa > 2:1772342/1‑47 (MQ=255)
aagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTa > 2:1746057/1‑47 (MQ=255)
aagAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTa > 2:1111012/1‑47 (MQ=255)
agAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTaa < 2:1101127/47‑1 (MQ=255)
agAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTaa < 2:233996/47‑1 (MQ=255)
agAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTaa < 2:1178188/47‑1 (MQ=255)
agAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTaa < 2:583905/47‑1 (MQ=255)
gAAAACTTTTCTT‑TTTAACGCACTCATGGGAATCCCCTAATCTTAAAg > 1:1078430/1‑48 (MQ=255)
gAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAg < 2:1761859/48‑1 (MQ=255)
gAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAg < 2:916225/48‑1 (MQ=255)
gAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAg < 2:6476/48‑1 (MQ=255)
aaaaCTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAgg > 2:1349806/1‑48 (MQ=255)
aaaaCTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAgg < 2:921137/48‑1 (MQ=255)
aCTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGc < 1:1809953/48‑1 (MQ=255)
aCTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGc < 1:2529212/48‑1 (MQ=255)
aCTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGc < 2:2118704/48‑1 (MQ=255)
aCTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGc < 1:997284/48‑1 (MQ=255)
cttttctt‑ttTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGc > 2:2110367/1‑47 (MQ=255)
ttttCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCa > 1:814180/1‑47 (MQ=255)
|
ACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCA > NC_017635/2407138‑2407222
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGC > NC_017635/2407132‑2407229
|
AGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTT < M01420:84:000000000‑ABVEH:1:2114:22017:20383/51‑1 (MQ=60)
GAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTTT < M01420:84:000000000‑ABVEH:1:2109:17096:13220/51‑1 (MQ=60)
AACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTTTT > M01420:84:000000000‑ABVEH:1:2112:11266:13955/1‑51 (MQ=60)
ACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACG > M01420:84:000000000‑ABVEH:1:1105:19171:20681/1‑51 (MQ=60)
ACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACG > M01420:84:000000000‑ABVEH:1:2112:22031:4414/1‑51 (MQ=60)
CGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGC < M01420:84:000000000‑ABVEH:1:2109:16803:14329/51‑1 (MQ=60)
CGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGC < M01420:84:000000000‑ABVEH:1:2106:18790:18104/51‑1 (MQ=60)
GTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGC > M01420:84:000000000‑ABVEH:1:1107:2913:18097/1‑50 (MQ=60)
AAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACT > M01420:84:000000000‑ABVEH:1:2104:10560:7374/1‑51 (MQ=60)
AAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACT > M01420:84:000000000‑ABVEH:1:2101:7381:23829/1‑51 (MQ=60)
AAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACT < M01420:84:000000000‑ABVEH:1:2112:27747:14485/51‑1 (MQ=60)
AAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACT < M01420:84:000000000‑ABVEH:1:1102:18847:20529/51‑1 (MQ=60)
AAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACT < M01420:84:000000000‑ABVEH:1:1104:6341:23394/51‑1 (MQ=60)
AATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTC < M01420:84:000000000‑ABVEH:1:2114:18008:6226/51‑1 (MQ=60)
AATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTC < M01420:84:000000000‑ABVEH:1:1108:13600:4715/51‑1 (MQ=60)
AATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTC < M01420:84:000000000‑ABVEH:1:2114:20329:15632/51‑1 (MQ=60)
ACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCAT < M01420:84:000000000‑ABVEH:1:1111:20990:6730/50‑1 (MQ=60)
ACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCAT < M01420:84:000000000‑ABVEH:1:1101:14366:28602/50‑1 (MQ=60)
ACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCAT < M01420:84:000000000‑ABVEH:1:1106:9578:8012/50‑1 (MQ=60)
CGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGG < M01420:84:000000000‑ABVEH:1:1114:26054:6914/51‑1 (MQ=60)
CTTTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCC > M01420:84:000000000‑ABVEH:1:1114:25601:18223/1‑51 (MQ=60)
TTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCC < M01420:84:000000000‑ABVEH:1:2103:13865:3657/50‑1 (MQ=60)
TTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCC < M01420:84:000000000‑ABVEH:1:1109:16580:14027/50‑1 (MQ=60)
TTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCC < M01420:84:000000000‑ABVEH:1:1108:17981:13262/50‑1 (MQ=60)
TTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCC < M01420:84:000000000‑ABVEH:1:1112:11991:3321/50‑1 (MQ=60)
TTCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCC < M01420:84:000000000‑ABVEH:1:1103:24869:16986/50‑1 (MQ=60)
TCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCT < M01420:84:000000000‑ABVEH:1:2108:18967:21609/50‑1 (MQ=60)
TCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCT < M01420:84:000000000‑ABVEH:1:2113:24361:5998/50‑1 (MQ=60)
TCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCT < M01420:84:000000000‑ABVEH:1:2112:11002:20966/50‑1 (MQ=60)
TCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCT < M01420:84:000000000‑ABVEH:1:1109:8102:17424/50‑1 (MQ=60)
TCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCT < M01420:84:000000000‑ABVEH:1:1109:5720:10595/50‑1 (MQ=60)
TCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCT < M01420:84:000000000‑ABVEH:1:1108:26174:11485/50‑1 (MQ=60)
TCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCT < M01420:84:000000000‑ABVEH:1:1105:9295:25731/50‑1 (MQ=60)
TCAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCT < M01420:84:000000000‑ABVEH:1:1106:5730:15481/50‑1 (MQ=60)
CAGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAA < M01420:84:000000000‑ABVEH:1:1106:11359:18770/51‑1 (MQ=60)
AGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAT > M01420:84:000000000‑ABVEH:1:2114:23403:6250/1‑51 (MQ=60)
AGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAT < M01420:84:000000000‑ABVEH:1:1113:18521:17157/51‑1 (MQ=60)
AGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAT < M01420:84:000000000‑ABVEH:1:1112:8108:12453/51‑1 (MQ=60)
AGGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAAT < M01420:84:000000000‑ABVEH:1:1102:19098:22572/51‑1 (MQ=60)
GGTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATC < M01420:84:000000000‑ABVEH:1:2104:19378:12848/51‑1 (MQ=60)
GTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCT < M01420:84:000000000‑ABVEH:1:1112:21030:14542/51‑1 (MQ=60)
GTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCT < M01420:84:000000000‑ABVEH:1:1101:17062:11311/51‑1 (MQ=60)
GTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCT < M01420:84:000000000‑ABVEH:1:2103:15507:27142/51‑1 (MQ=60)
GTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCT < M01420:84:000000000‑ABVEH:1:1106:11002:23520/51‑1 (MQ=60)
GTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCT < M01420:84:000000000‑ABVEH:1:1106:21856:24540/51‑1 (MQ=60)
GTAAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCT < M01420:84:000000000‑ABVEH:1:1112:6716:12541/51‑1 (MQ=60)
AAGTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTT < M01420:84:000000000‑ABVEH:1:2105:18638:25520/50‑1 (MQ=60)
GTAAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAA > M01420:84:000000000‑ABVEH:1:1109:8777:22460/1‑50 (MQ=60)
AAGAAAACTTTTCTT‑TTTAACGCACTCATGGGAATCCCCTAATCTTAAAGG > M01420:84:000000000‑ABVEH:1:1110:20989:9104/1‑51 (MQ=57)
AACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAA < M01420:84:000000000‑ABVEH:1:1109:5526:16264/51‑1 (MQ=60)
AACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAA < M01420:84:000000000‑ABVEH:1:2108:27285:17434/51‑1 (MQ=60)
AACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAA < M01420:84:000000000‑ABVEH:1:2102:8451:13120/51‑1 (MQ=60)
ACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAA > M01420:84:000000000‑ABVEH:1:1107:12964:28188/1‑50 (MQ=60)
ACTTTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAA > M01420:84:000000000‑ABVEH:1:2112:27843:8612/1‑50 (MQ=60)
TTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAG < M01420:84:000000000‑ABVEH:1:1106:8855:21591/49‑1 (MQ=60)
TTTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAG < M01420:84:000000000‑ABVEH:1:2108:23934:22599/49‑1 (MQ=60)
TTCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGAC < M01420:84:000000000‑ABVEH:1:1104:20857:25478/50‑1 (MQ=60)
TCTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGC > M01420:84:000000000‑ABVEH:1:2106:15708:20333/1‑51 (MQ=60)
CTT‑TTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGC > M01420:84:000000000‑ABVEH:1:1104:23529:9279/1‑50 (MQ=60)
|
AGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGC > NC_017635/2407132‑2407229
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
