Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,011,688 |
G→A |
P146P (CCG→CCA) |
fliF → |
FliF |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,011,688 | 0 | G | A | 96.4%
| 371.2
/ ‑0.1
| 112 | P146P (CCG→CCA) | fliF | FliF |
| Reads supporting (aligned to +/- strand): ref base G (2/2); new base A (47/61); total (49/63) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.08e-01 |
Only 100 of 114 total aligned reads displayed.
AGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGGTGACGGTAAA > NC_000913/2011600‑2011777
|
aGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTaa < 1:3363915/93‑1 (MQ=255)
gTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTaaa > 2:4425374/1‑93 (MQ=255)
gTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTaaa > 2:1167936/1‑93 (MQ=255)
tttGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTaaaa < 1:2814986/93‑1 (MQ=255)
gTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAgggg < 1:1193276/93‑1 (MQ=255)
gTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAgggg < 1:1218937/93‑1 (MQ=255)
tATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGgc > 1:290231/1‑93 (MQ=255)
tATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGgc < 2:3386469/93‑1 (MQ=255)
aTCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTAACATCGAAACTATCGGCCCAGTAAAAggggtg > 2:2513079/1‑91 (MQ=255)
tCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGgcgc > 1:1923051/1‑93 (MQ=255)
aGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGgcgcgc > 2:1365053/1‑93 (MQ=255)
aGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGgcgcgc > 1:1075623/1‑93 (MQ=255)
gCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGcgcgcg > 2:3652406/1‑93 (MQ=255)
ccAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGt < 2:3164153/93‑1 (MQ=255)
cAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACGATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTa < 2:1540279/93‑1 (MQ=255)
aGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTAc < 2:1688080/93‑1 (MQ=255)
gTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACa < 1:3218479/93‑1 (MQ=255)
gTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACa > 1:2015604/1‑93 (MQ=255)
cAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCt > 2:1785478/1‑93 (MQ=255)
cAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCt < 1:4598482/93‑1 (MQ=255)
aGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTg < 2:3267637/93‑1 (MQ=255)
gCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTgg < 2:1211991/93‑1 (MQ=255)
cGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGc < 2:4183920/93‑1 (MQ=255)
gAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCa > 2:2271163/1‑93 (MQ=255)
gAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCa > 1:4015593/1‑93 (MQ=255)
aaCAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCaa > 2:10589/1‑93 (MQ=255)
aCAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAAt < 1:3101659/93‑1 (MQ=255)
aCAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAAt < 2:3888521/93‑1 (MQ=255)
aGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGc < 1:4421187/93‑1 (MQ=255)
ggTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGcc > 2:3541036/1‑93 (MQ=255)
ggTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGcc > 1:2475466/1‑93 (MQ=255)
gTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCg < 1:294124/93‑1 (MQ=255)
gTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCg < 1:3719440/93‑1 (MQ=255)
gTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCg > 2:550492/1‑93 (MQ=255)
aaTTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGaaa > 1:3422303/1‑93 (MQ=255)
aaTTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGaaa > 1:1605872/1‑93 (MQ=255)
aTTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAAc < 1:882794/93‑1 (MQ=255)
aTTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAAc < 1:3547984/93‑1 (MQ=255)
ttATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAAcc > 2:4398406/1‑93 (MQ=255)
tATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCg < 2:61492/93‑1 (MQ=255)
aTCAGGGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGt < 1:1681569/93‑1 (MQ=255)
aTCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTATCATCGAAACTATCGGGCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGGAACCGt > 1:1361221/1‑93 (MQ=255)
aTCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGt > 1:165418/1‑93 (MQ=255)
aTCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGt > 2:741738/1‑93 (MQ=255)
tCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTc < 2:530125/93‑1 (MQ=255)
cAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCt < 1:2894775/93‑1 (MQ=255)
aGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCtt > 1:3244050/1‑93 (MQ=255)
gggCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGTGCGCGTACATCTGGCAATGCCGAAACCGTCTTTAt < 2:3281153/93‑1 (MQ=255)
gggCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTAt < 2:938887/93‑1 (MQ=255)
ggCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTAtt > 1:259724/1‑93 (MQ=255)
ggCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTAtt < 1:477521/93‑1 (MQ=255)
tGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTcc < 2:4476889/93‑1 (MQ=255)
tGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTcc < 2:2305975/93‑1 (MQ=255)
tGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTcc > 2:3577790/1‑93 (MQ=255)
tGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTcc < 1:180638/93‑1 (MQ=255)
ggAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCg > 1:746646/1‑93 (MQ=255)
ggAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCg > 2:4221644/1‑93 (MQ=255)
aGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGa < 2:2617685/93‑1 (MQ=255)
ggCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGaa < 2:2785281/93‑1 (MQ=255)
ggCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGaa < 2:1426310/93‑1 (MQ=255)
ggCGAGCTTTCTCGTACCATCGAAACTATCGGACCAGTTAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGaa > 1:391926/1‑93 (MQ=255)
gCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTTTGTGAAc > 1:3726094/1‑93 (MQ=255)
gCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAAc < 2:183956/93‑1 (MQ=255)
gAGCTTTCTCGTACCATCGAACCTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCTTCTTTATTCGTCCGTGAACaa < 2:697823/93‑1 (MQ=255)
gAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaa < 1:3933348/93‑1 (MQ=255)
gAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaa < 1:2951265/93‑1 (MQ=255)
aGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaaa > 1:64195/1‑93 (MQ=255)
aGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaaa > 2:3619181/1‑93 (MQ=255)
gCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaaaa < 2:2894445/93‑1 (MQ=255)
gCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaaaa > 1:344586/1‑93 (MQ=255)
cTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaaaaa > 1:4412650/1‑93 (MQ=255)
cTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaaaaa < 1:1156457/93‑1 (MQ=255)
cTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaaaaa < 1:2155962/93‑1 (MQ=255)
cTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaaaaa > 1:2688709/1‑93 (MQ=255)
tcncGTACCATCGAAACTATCNNCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAAccc < 1:2302048/93‑1 (MQ=255)
ctcGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAAcccc < 1:1369124/93‑1 (MQ=255)
cGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCt < 2:3424677/93‑1 (MQ=255)
cGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCt < 1:3170664/93‑1 (MQ=255)
tACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTc > 1:1106437/1‑93 (MQ=255)
ccATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCtc > 1:1828666/1‑92 (MQ=255)
cATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGc < 2:4466205/93‑1 (MQ=255)
aTCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCa > 1:818780/1‑93 (MQ=255)
tCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCAt < 2:4310177/93‑1 (MQ=255)
tCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCAt > 1:831938/1‑93 (MQ=255)
cGAATCTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATc < 2:347246/93‑1 (MQ=255)
gAAACTATCGGCCCGGTAAAAGGGGCGGGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCg < 1:2244686/93‑1 (MQ=255)
gAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCg > 1:4300811/1‑93 (MQ=255)
aaaCTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCgg > 1:4207220/1‑93 (MQ=255)
aaCTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGt > 2:3230393/1‑93 (MQ=255)
aaCTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAAGGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAGCCCCCTTCTGCATCGGt < 1:2202901/93‑1 (MQ=255)
aCTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTg < 1:744145/93‑1 (MQ=255)
cTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGa > 1:4043376/1‑93 (MQ=255)
cTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGa < 1:2455307/93‑1 (MQ=255)
tATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGAc > 2:2661414/1‑93 (MQ=255)
tATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGAc < 2:977233/93‑1 (MQ=255)
aTCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACg < 1:135750/93‑1 (MQ=255)
aTCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACACCCTTCTGCATCGGTGACg > 2:2871216/1‑93 (MQ=255)
tCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACgg > 2:2447307/1‑93 (MQ=255)
gCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTaa > 1:1592289/1‑93 (MQ=255)
cccAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTaaa < 2:1955411/93‑1 (MQ=255)
|
AGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGGTGACGGTAAA > NC_000913/2011600‑2011777
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGGTGACGGTAAATC > NC_000913/2011595‑2011779
|
GGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCA < SRR4302535.1083245/94‑1 (MQ=60)
AGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAA < SRR4302535.3387323/94‑1 (MQ=60)
TTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAG < SRR4302535.2834986/94‑1 (MQ=60)
TTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGG < SRR4302535.19809/94‑1 (MQ=60)
GTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGC < SRR4302535.1201826/94‑1 (MQ=60)
GTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGC < SRR4302535.1227680/94‑1 (MQ=60)
GTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGC > SRR4302535.292265/1‑94 (MQ=60)
ATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGC > SRR4302535.1936911/1‑94 (MQ=60)
CAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGC > SRR4302535.1083270/1‑94 (MQ=60)
AGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACA > SRR4302535.2030127/1‑94 (MQ=60)
GTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACAT < SRR4302535.3240769/94‑1 (MQ=60)
CAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTG < SRR4302535.4629764/94‑1 (MQ=60)
AGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGG > SRR4302535.254039/1‑94 (MQ=60)
CGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCA > SRR4302535.4043059/1‑94 (MQ=60)
CGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCA > SRR4302535.3010198/1‑94 (MQ=60)
ACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATG < SRR4302535.3123250/94‑1 (MQ=60)
AGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCC > SRR4302535.2493320/1‑94 (MQ=60)
AGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCC < SRR4302535.4451463/94‑1 (MQ=60)
GTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGA < SRR4302535.296177/94‑1 (MQ=60)
GTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGA < SRR4302535.3745205/94‑1 (MQ=60)
GAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAA > SRR4302535.3446107/1‑94 (MQ=60)
GAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAA > SRR4302535.1617459/1‑94 (MQ=60)
GAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAA > SRR4302535.1477779/1‑94 (MQ=60)
ATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACC < SRR4302535.3572613/94‑1 (MQ=60)
ATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACC < SRR4302535.889045/94‑1 (MQ=60)
TATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTATCATCGAAACTATCGGGCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGGAACCGT > SRR4302535.1370957/1‑94 (MQ=60)
TATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGT > SRR4302535.166571/1‑94 (MQ=60)
ATCAGGGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTC < SRR4302535.1693747/94‑1 (MQ=60)
CAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTT < SRR4302535.7427/94‑1 (MQ=60)
CAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTT < SRR4302535.2915249/94‑1 (MQ=60)
CAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTT > SRR4302535.3266584/1‑94 (MQ=60)
CGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTAT < SRR4302535.3494824/94‑1 (MQ=60)
GGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATT > SRR4302535.261522/1‑94 (MQ=60)
GGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTC < SRR4302535.480871/94‑1 (MQ=60)
TGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCG > SRR4302535.751898/1‑94 (MQ=60)
TGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCG < SRR4302535.181893/94‑1 (MQ=60)
AGGCGAGCTTTCTCGTACCATCGAAACTATCGGACCAGTTAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAA > SRR4302535.394660/1‑94 (MQ=60)
GGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTTTGTGAAC > SRR4302535.3751908/1‑94 (MQ=60)
GAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAA < SRR4302535.2971997/94‑1 (MQ=60)
GAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAA > SRR4302535.64679/1‑94 (MQ=60)
GAGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAA < SRR4302535.3960192/94‑1 (MQ=60)
AGCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAA > SRR4302535.346963/1‑94 (MQ=60)
GCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAA > SRR4302535.2707922/1‑94 (MQ=60)
GCTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAA > SRR4302535.4442850/1‑94 (MQ=60)
CTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAAC < SRR4302535.2171453/94‑1 (MQ=60)
CTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAAC < SRR4302535.1164718/94‑1 (MQ=60)
TCNCGTACCATCGAAACTATCNNCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCC < SRR4302535.2318520/94‑1 (MQ=60)
CTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCC < SRR4302535.1378911/94‑1 (MQ=60)
CGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTT < SRR4302535.3192620/94‑1 (MQ=60)
GTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTC > SRR4302535.1114341/1‑94 (MQ=60)
ACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTG < SRR4302535.409656/94‑1 (MQ=60)
ACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTC > SRR4302535.1841868/1‑94 (MQ=60)
CATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCA > SRR4302535.824526/1‑94 (MQ=60)
ATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCAT > SRR4302535.837768/1‑94 (MQ=60)
CGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCG > SRR4302535.4330241/1‑94 (MQ=60)
GAAACTATCGGCCCGGTAAAAGGGGCGGGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGG < SRR4302535.2260649/94‑1 (MQ=60)
GAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGG > SRR4302535.4236013/1‑94 (MQ=60)
AACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAAGGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAGCCCCCTTCTGCATCGGTG < SRR4302535.2218600/94‑1 (MQ=60)
ACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGA > SRR4302535.4071056/1‑94 (MQ=60)
ACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGA < SRR4302535.749369/94‑1 (MQ=60)
CTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGAC < SRR4302535.2473009/94‑1 (MQ=60)
ATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGG < SRR4302535.136697/94‑1 (MQ=60)
GGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAA > SRR4302535.1603777/1‑94 (MQ=60)
CCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAAT > SRR4302535.3391593/1‑94 (MQ=60)
CCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAAT > SRR4302535.3042597/1‑94 (MQ=60)
CCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATC < SRR4302535.2609713/94‑1 (MQ=60)
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GGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGGTGACGGTAAATC > NC_000913/2011595‑2011779
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
