Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,073,702	A→G	S167S (AGT→AGC)	yggF ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,073,702	0	A	G	100.0%	583.6 / NA	183	S167S (AGT→AGC)	yggF	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (73/110); total (73/110)

Only 100 of 196 total aligned reads displayed.

CTGCCAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCACTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAG  >  NC_000913/3073612‑3073791

cTGCCAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGGGGCGCt                                                                                         >  1:851292/1‑93 (MQ=255)

  gCCAGCAGGTGAGCTAGCTGGCCGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGATTCCTCAACCGCGGCGCTCa                                                                                       <  2:3018460/93‑1 (MQ=255)

   ccAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAg                                                                                      <  2:1794789/93‑1 (MQ=255)

    cagcagGTCAGCACGCTGGCGGCGACATCGCCATCCCGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAgg                                                                                     >  2:2253088/1‑93 (MQ=255)

     agcagGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGgc                                                                                    >  1:3537334/1‑93 (MQ=255)

      gcagGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGgcc                                                                                   >  1:3999772/1‑92 (MQ=255)

      gcagGTCAGCACGCTGGCGGCGACAACGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGGTGCTTCCTCAATCGCGGCGCTCAcgcg                                                                                   >  2:381642/1‑93 (MQ=255)

      gcagGTCAGCACGCGGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGgcg                                                                                   <  1:3019338/93‑1 (MQ=255)

        agGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGcgcg                                                                                 >  1:1814778/1‑93 (MQ=255)

         ggTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCTCGGCGCTCAGGCGCgg                                                                                <  1:825282/93‑1 (MQ=255)

         ggTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCgg                                                                                <  1:1272738/93‑1 (MQ=255)

          gTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGt                                                                               <  1:1548934/93‑1 (MQ=255)

          gTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGt                                                                               <  2:1167034/93‑1 (MQ=255)

          gTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGt                                                                               <  2:2292011/93‑1 (MQ=255)

           tCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGtt                                                                              >  2:1453603/1‑93 (MQ=255)

             aGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTa                                                                            <  1:1289119/93‑1 (MQ=255)

             aGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTa                                                                            <  2:1915945/93‑1 (MQ=255)

              gCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTAt                                                                           <  1:292989/93‑1 (MQ=255)

              gCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTAt                                                                           >  1:2780185/1‑93 (MQ=255)

               cACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATc                                                                          >  2:3766197/1‑93 (MQ=255)

               cACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATc                                                                          <  1:2082470/93‑1 (MQ=255)

                aCGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATcc                                                                         <  1:4585329/93‑1 (MQ=255)

                aCGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATcc                                                                         >  1:3912248/1‑93 (MQ=255)

                 cGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCa                                                                        >  1:2003546/1‑93 (MQ=255)

                  gCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATAGCGGCGCTCAGGCGCGGTTTATCCAg                                                                       >  2:103217/1‑93 (MQ=255)

                     ggcggcGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGt                                                                    <  1:4329887/93‑1 (MQ=255)

                      gcggcgACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTa                                                                   <  2:2163128/93‑1 (MQ=255)

                       cggcgACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTaa                                                                  <  1:491963/93‑1 (MQ=255)

                       cggcgACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTaa                                                                  <  1:2239419/93‑1 (MQ=255)

                       cggcgACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTaa                                                                  <  2:4490931/93‑1 (MQ=255)

                         gcgTCATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAAcc                                                                >  2:3854501/1‑93 (MQ=255)

                          cgACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCa                                                               <  1:1433960/93‑1 (MQ=255)

                          cgACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCa                                                               <  2:2431304/93‑1 (MQ=255)

                           gACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCAt                                                              <  2:3238157/93‑1 (MQ=255)

                            ccATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATg                                                             <  1:4457685/92‑1 (MQ=255)

                            aCATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCTCGGTTTATCCAGCGTAACCATg                                                             <  2:2379671/93‑1 (MQ=255)

                            aCATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATg                                                             <  1:2721644/93‑1 (MQ=255)

                            aCATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATg                                                             <  2:925908/93‑1 (MQ=255)

                             cATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATgc                                                            >  1:4242792/1‑93 (MQ=255)

                               tCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATgcgc                                                          >  1:2161051/1‑93 (MQ=255)

                               tCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATgcgc                                                          >  1:4610570/1‑93 (MQ=255)

                                cGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCa                                                         <  1:4041710/93‑1 (MQ=255)

                                  ccATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGc                                                       <  2:3499329/93‑1 (MQ=255)

                                  ccATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGc                                                       >  1:4668554/1‑93 (MQ=255)

                                  ccATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGc                                                       <  1:1064639/93‑1 (MQ=255)

                                  ccATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGc                                                       <  1:2194724/93‑1 (MQ=255)

                                  ccATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGATTATCCAGCGTAACCATGCGCAGc                                                       >  2:1936212/1‑93 (MQ=255)

                                   cATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCt                                                      >  1:2570308/1‑93 (MQ=255)

                                     tCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTa                                                    <  2:2248969/93‑1 (MQ=255)

                                      ccGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGTGCAGCTTAt                                                   <  2:4667575/93‑1 (MQ=255)

                                       cGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATc                                                  <  2:667077/93‑1 (MQ=255)

                                       cGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATc                                                  <  2:2607822/93‑1 (MQ=255)

                                        ggCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATcc                                                 <  2:2882176/93‑1 (MQ=255)

                                         gCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCa                                                <  2:2822347/93‑1 (MQ=255)

                                            gggCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCg                                             <  1:3419216/93‑1 (MQ=255)

                                            gggCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCg                                             >  2:4430721/1‑93 (MQ=255)

                                                aaaacCCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGttt                                         <  2:70636/93‑1 (MQ=255)

                                                aaaaaCCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGttt                                         >  2:3332107/1‑93 (MQ=255)

                                                aaaaaCCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGttt                                         >  1:2935789/1‑93 (MQ=255)

                                                  aaaCCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGc                                       >  2:2760647/1‑93 (MQ=255)

                                                    aCCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCt                                     >  2:835359/1‑93 (MQ=255)

                                                    aCCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCt                                     >  2:1408788/1‑93 (MQ=255)

                                                    aCCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCt                                     >  1:3317939/1‑93 (MQ=255)

                                                      cTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTaa                                   <  2:621725/93‑1 (MQ=255)

                                                      cTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTaa                                   <  1:3968273/93‑1 (MQ=255)

                                                       gtcccGCCCAGCTGTGGTGCTTCCTCAATCGCGGGGGTCAGGCGCGGTTTATCCCGCGTAACCATGCGCAGCTTATCCCGCGGTTTGCCTAAc                                  >  2:4100665/5‑93 (MQ=255)

                                                         cACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGc                                <  1:3128240/93‑1 (MQ=255)

                                                         cACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGc                                <  1:2535157/93‑1 (MQ=255)

                                                           cGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCtt                              <  1:1146155/93‑1 (MQ=255)

                                                            gCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCttt                             <  2:2013291/93‑1 (MQ=255)

                                                            gCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCttt                             <  2:3046512/93‑1 (MQ=255)

                                                            gCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCttt                             >  2:821860/1‑93 (MQ=255)

                                                             cccAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTc                            <  1:1237684/93‑1 (MQ=255)

                                                             cccAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTc                            <  1:1970529/93‑1 (MQ=255)

                                                              ccAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGATTGCCTAACGCTTTCg                           >  2:373500/1‑93 (MQ=255)

                                                                 gCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCa                        <  2:3889401/93‑1 (MQ=255)

                                                                 gCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCa                        <  2:3104818/93‑1 (MQ=255)

                                                                 gCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCa                        >  1:2809056/1‑93 (MQ=255)

                                                                 gCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCa                        >  1:1328275/1‑93 (MQ=255)

                                                                    gtgtTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGt                     <  2:3102858/93‑1 (MQ=255)

                                                                    gtgtTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGt                     >  1:952849/1‑93 (MQ=255)

                                                                     tgtTGCTTCCTCAATCGCGTCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGtt                    <  2:4022937/93‑1 (MQ=255)

                                                                     tgtTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGtt                    <  1:2884190/93‑1 (MQ=255)

                                                                       ttGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTgc                  <  1:4311305/93‑1 (MQ=255)

                                                                           ttCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCTCATCTTATCCAGCAGTTTGCCTAACGCTTTCGCCACGTTGCGCAg              <  2:4568664/93‑1 (MQ=255)

                                                                           ttCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAg              >  1:4078346/1‑93 (MQ=255)

                                                                            tCCTCAATCGCGGCTCTCAGGCGCGGTTTATCCAGCTTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAgg             <  2:2102364/93‑1 (MQ=255)

                                                                            tCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAgg             >  2:1302582/1‑93 (MQ=255)

                                                                             ccTCAATCGCGGCGCTCAGGCGCGGCTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCACGt            >  2:478020/1‑93 (MQ=255)

                                                                              cTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGtt           >  1:1062602/1‑93 (MQ=255)

                                                                              cTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGtt           >  1:1728669/1‑93 (MQ=255)

                                                                                cAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGTTTTG‑CTAACGCTTTCGCCACGTTGCGCAGGTTGTc        <  2:2503537/93‑1 (MQ=255)

                                                                                cAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGt         >  1:367195/1‑93 (MQ=255)

                                                                                 aaTCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTc        <  1:2482890/93‑1 (MQ=255)

                                                                                  aTCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTcc       <  2:589827/93‑1 (MQ=255)

                                                                                   tCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCg      >  2:1064035/1‑93 (MQ=255)

                                                                                   tCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCg      >  1:4247755/1‑93 (MQ=255)

                                                                                     gcggcgCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTc    <  2:361014/93‑1 (MQ=255)

                                                                                      cgGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCa   <  1:1481513/93‑1 (MQ=255)

                                                                                      cgGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCa   <  1:3732258/93‑1 (MQ=255)

CTGCCAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCACTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAG  >  NC_000913/3073612‑3073791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCCTGCCAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCACTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAGAGGC  >  NC_000913/3073609‑3073795

ATCCTGCCAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCG                                                                                               >  SRR4302535.4550653/1‑94 (MQ=60)

ATCCTGCCAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCG                                                                                               >  SRR4302535.2075324/1‑94 (MQ=60)

  CCTGCCAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGGGGCGCT                                                                                             >  SRR4302535.857287/1‑94 (MQ=60)

      CCAGCAGGTCAGCACGCTGGCGGCTACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGG                                                                                         <  SRR4302535.1910201/94‑1 (MQ=60)

      CCAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGG                                                                                         >  SRR4302535.2727102/1‑94 (MQ=60)

       CAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGC                                                                                        >  SRR4302535.3561891/1‑94 (MQ=60)

        AGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCG                                                                                       >  SRR4302535.4358167/1‑94 (MQ=60)

        AGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCC                                                                                       >  SRR4302535.4027135/1‑94 (MQ=60)

         GCAGGTCAGCACGCGGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGC                                                                                      <  SRR4302535.3040486/94‑1 (MQ=60)

          CAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCG                                                                                     >  SRR4302535.1827900/1‑94 (MQ=60)

            GGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCTCGGCGCTCAGGCGCGGT                                                                                   <  SRR4302535.831065/94‑1 (MQ=60)

            GGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGT                                                                                   <  SRR4302535.1281830/94‑1 (MQ=60)

             GTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTT                                                                                  <  SRR4302535.1560092/94‑1 (MQ=60)

              TCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTT                                                                                 <  SRR4302535.77526/94‑1 (MQ=60)

                AGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTAT                                                                               <  SRR4302535.1298304/94‑1 (MQ=60)

                AGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTAT                                                                               >  SRR4302535.2799979/1‑94 (MQ=60)

                 GCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATC                                                                              <  SRR4302535.295037/94‑1 (MQ=60)

                  CACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCC                                                                             >  SRR4302535.3939030/1‑94 (MQ=60)

                  CACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCC                                                                             <  SRR4302535.2097471/94‑1 (MQ=60)

                  CACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCC                                                                             <  SRR4302535.833484/94‑1 (MQ=60)

                   ACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCA                                                                            >  SRR4302535.2017981/1‑94 (MQ=60)

                   ACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCA                                                                            <  SRR4302535.4616553/94‑1 (MQ=60)

                    CGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAG                                                                           <  SRR4302535.1510651/94‑1 (MQ=60)

                     GCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGC                                                                          <  SRR4302535.4305656/94‑1 (MQ=60)

                        GGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTA                                                                       <  SRR4302535.4359497/94‑1 (MQ=60)

                          CGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAAC                                                                     <  SRR4302535.4530498/94‑1 (MQ=60)

                          CGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAAC                                                                     <  SRR4302535.2255350/94‑1 (MQ=60)

                          CGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAAC                                                                     <  SRR4302535.495411/94‑1 (MQ=60)

                             CGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCAT                                                                  <  SRR4302535.1444198/94‑1 (MQ=60)

                               CCATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGC                                                                <  SRR4302535.4488257/94‑1 (MQ=60)

                               ACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGC                                                                <  SRR4302535.2741086/94‑1 (MQ=60)

                               ACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGC                                                                >  SRR4302535.4271832/1‑94 (MQ=60)

                                CATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCG                                                               <  SRR4302535.4003420/94‑1 (MQ=60)

                                CATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCG                                                               <  SRR4302535.3838841/94‑1 (MQ=60)

                                 ATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGC                                                              >  SRR4302535.2176565/1‑94 (MQ=60)

                                 ATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGC                                                              >  SRR4302535.4641894/1‑94 (MQ=60)

                                   CGCCATCCGTCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGTTTCCGTAATCGTGGTGCTCAGGCTCGGTTTATCCAGCGTAACCATGCGCAG                                                            >  SRR4302535.4711595/1‑94 (MQ=60)

                                   CGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAG                                                            <  SRR4302535.4069380/94‑1 (MQ=60)

                                   CGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAG                                                            <  SRR4302535.1489434/94‑1 (MQ=60)

                                    GCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGC                                                           >  SRR4302535.4700097/1‑94 (MQ=60)

                                     CCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCT                                                          <  SRR4302535.1072214/94‑1 (MQ=60)

                                     CCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCT                                                          >  SRR4302535.2588789/1‑94 (MQ=60)

                                     CCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCT                                                          <  SRR4302535.2210363/94‑1 (MQ=60)

                                      CATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTT                                                         >  SRR4302535.4273343/1‑94 (MQ=60)

                                      CATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTT                                                         >  SRR4302535.2799920/1‑94 (MQ=60)

                                       ATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTA                                                        >  SRR4302535.1166613/1‑94 (MQ=60)

                                          CGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCC                                                     <  SRR4302535.3945362/94‑1 (MQ=60)

                                           GGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCA                                                    <  SRR4302535.1110459/94‑1 (MQ=60)

                                             CAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGC                                                  >  SRR4302535.1308313/1‑94 (MQ=60)

                                               GGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGG                                                <  SRR4302535.3442997/94‑1 (MQ=60)

                                                  CAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTT                                             >  SRR4302535.468161/1‑94 (MQ=60)

                                                  CAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTT                                             >  SRR4302535.3474804/1‑94 (MQ=60)

                                                  CAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTT                                             >  SRR4302535.2956449/1‑94 (MQ=60)

                                                  CAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTT                                             >  SRR4302535.4179897/1‑94 (MQ=60)

                                                   AAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTG                                            <  SRR4302535.3031646/94‑1 (MQ=60)

                                                      AACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCT                                         >  SRR4302535.3341025/1‑94 (MQ=60)

                                                      AACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCT                                         >  SRR4302535.2009659/1‑94 (MQ=60)

                                                         CTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAAC                                      <  SRR4302535.1700668/94‑1 (MQ=60)

                                                         CTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAAC                                      <  SRR4302535.3995376/94‑1 (MQ=60)

                                                         CTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAAC                                      <  SRR4302535.2379632/94‑1 (MQ=60)

                                                            CACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCT                                   <  SRR4302535.3150028/94‑1 (MQ=60)

                                                            CACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCT                                   <  SRR4302535.2553417/94‑1 (MQ=60)

                                                            CACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCT                                   <  SRR4302535.1768176/94‑1 (MQ=60)

                                                            CACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCACAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCT                                   >  SRR4302535.2855506/1‑94 (MQ=60)

                                                             ACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTT                                  >  SRR4302535.1289344/1‑94 (MQ=60)

                                                              CGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTT                                 <  SRR4302535.3587315/94‑1 (MQ=60)

                                                              CGCCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTT                                 <  SRR4302535.1154323/94‑1 (MQ=60)

                                                                CCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCG                               <  SRR4302535.1370424/94‑1 (MQ=60)

                                                                CCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCG                               <  SRR4302535.1984723/94‑1 (MQ=60)

                                                                CCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCG                               <  SRR4302535.2182941/94‑1 (MQ=60)

                                                                CCCAGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCG                               <  SRR4302535.1246521/94‑1 (MQ=60)

                                                                   AGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCA                            >  SRR4302535.1337753/1‑94 (MQ=60)

                                                                   AGCTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCA                            >  SRR4302535.2829027/1‑94 (MQ=60)

                                                                    GCTGTGTTGCTGCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCAC                           <  SRR4302535.2536375/94‑1 (MQ=60)

                                                                     CTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACG                          >  SRR4302535.1261397/1‑94 (MQ=60)

                                                                     CTGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACG                          >  SRR4302535.2567370/1‑94 (MQ=60)

                                                                      TGTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGT                         >  SRR4302535.959601/1‑94 (MQ=60)

                                                                       GTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTT                        <  SRR4302535.2809075/94‑1 (MQ=60)

                                                                       GTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTT                        <  SRR4302535.4081986/94‑1 (MQ=60)

                                                                       GTGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTT                        <  SRR4302535.3415278/94‑1 (MQ=60)

                                                                        TGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTG                       <  SRR4302535.2904599/94‑1 (MQ=60)

                                                                        TGTTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTG                       <  SRR4302535.2940693/94‑1 (MQ=60)

                                                                         TTTGCTTCCTCAATCGCTGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGC                      <  SRR4302535.4028234/94‑1 (MQ=60)

                                                                          TTGCTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCG                     <  SRR4302535.4340798/94‑1 (MQ=60)

                                                                             CTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAG                  <  SRR4302535.22390/94‑1 (MQ=60)

                                                                             CTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAG                  >  SRR4302535.2067506/1‑94 (MQ=60)

                                                                             CTTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAG                  >  SRR4302535.4106251/1‑94 (MQ=60)

                                                                              TTCCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGG                 <  SRR4302535.4627820/94‑1 (MQ=60)

                                                                                CCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTT               <  SRR4302535.306012/94‑1 (MQ=60)

                                                                                CCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTT               <  SRR4302535.929490/94‑1 (MQ=60)

                                                                                CCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTT               >  SRR4302535.1070165/1‑94 (MQ=60)

                                                                                CCTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTT               >  SRR4302535.1741161/1‑94 (MQ=60)

                                                                                 CTCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTG              <  SRR4302535.3736136/94‑1 (MQ=60)

                                                                                  TCAATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGT             >  SRR4302535.369727/1‑94 (MQ=60)

                                                                                    AATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCC           <  SRR4302535.2500792/94‑1 (MQ=60)

                                                                                     ATCGCGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCG          >  SRR4302535.4276846/1‑94 (MQ=60)

                                                                                         CGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAG      <  SRR4302535.1492108/94‑1 (MQ=60)

                                                                                         CGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAG      <  SRR4302535.3758100/94‑1 (MQ=60)

                                                                                         CGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAG      <  SRR4302535.4439175/94‑1 (MQ=60)

                                                                                         CGGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAG      <  SRR4302535.2143353/94‑1 (MQ=60)

                                                                                          GGCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAGA     <  SRR4302535.3317185/94‑1 (MQ=60)

                                                                                           GCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAGAG    <  SRR4302535.1394925/94‑1 (MQ=60)

                                                                                           GCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAGAG    <  SRR4302535.567019/94‑1 (MQ=60)

                                                                                           GCGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAGAG    <  SRR4302535.2003360/94‑1 (MQ=60)

                                                                                            CGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAGAGG   >  SRR4302535.4218757/1‑94 (MQ=60)

                                                                                            CGCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAGAGG   <  SRR4302535.540120/94‑1 (MQ=60)

                                                                                             GCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAGAGGC  <  SRR4302535.3313401/94‑1 (MQ=60)

                                                                                             GCTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAGAGGC  <  SRR4302535.4401148/94‑1 (MQ=60)

ATCCTGCCAGCAGGTCAGCACGCTGGCGGCGACATCGCCATCCGGCAGGGCAAAAACCTTCACGCCCAGCTGTGTTGCTTCCTCAATCGCGGCACTCAGGCGCGGTTTATCCAGCGTAACCATGCGCAGCTTATCCAGCGGTTTGCCTAACGCTTTCGCCACGTTGCGCAGGTTGTCCGTCAGAGGC  >  NC_000913/3073609‑3073795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`