Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,251,837 |
T→C |
A6A (GCA→GCG) |
yhaJ ← |
putative transcriptional regulator LYSR‑type |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,251,837 | 0 | T | C | 95.2%
| 659.7
/ 16.4
| 232 | A6A (GCA→GCG) | yhaJ | putative transcriptional regulator LYSR‑type |
| Reads supporting (aligned to +/- strand): ref base T (3/8); new base C (97/123); total (101/131) |
| Fisher's exact test for biased strand distribution p-value = 3.58e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.26e-01 |
Only 100 of 238 total aligned reads displayed.
GGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAATGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTAC > NC_000913/3251747‑3251927
|
ggAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGc > 2:4470685/1‑93 (MQ=255)
ggAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGc > 2:2874993/1‑93 (MQ=255)
gAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGcc > 2:712853/1‑93 (MQ=255)
gAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGcc > 1:2223854/1‑93 (MQ=255)
aaGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGccc < 2:561993/93‑1 (MQ=255)
aGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCct > 1:4043223/1‑93 (MQ=255)
aGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCct < 2:1297837/93‑1 (MQ=255)
gCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCcttt < 2:3416784/93‑1 (MQ=255)
cccgcgTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCctttc < 1:3189049/91‑1 (MQ=255)
cACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCctttc < 2:2040124/93‑1 (MQ=255)
cgcgTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCctttctt < 1:3902579/93‑1 (MQ=255)
gTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTgg < 1:4597908/93‑1 (MQ=255)
gTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTgg < 1:1585809/93‑1 (MQ=255)
cccAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGcc > 2:3128582/1‑93 (MQ=255)
cccAGCTCATCCGCCGCCGCCCCAAACCTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTCCTTCCAGCGTTAACGCCCTTTCTTTGGcc < 2:3572793/93‑1 (MQ=255)
ccAGCTCATCAGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGcgt > 1:685262/1‑91 (MQ=255)
cAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCAGAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCAt < 1:2519594/93‑1 (MQ=255)
aGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCAtt < 2:2363598/93‑1 (MQ=255)
cTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTc > 1:1224582/1‑93 (MQ=255)
tCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCg > 2:95291/1‑93 (MQ=255)
tCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCg > 2:3931311/1‑93 (MQ=255)
cATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGt > 1:1080564/1‑93 (MQ=255)
cATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGt < 1:4339396/93‑1 (MQ=255)
aTCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGtt > 2:405433/1‑93 (MQ=255)
aTCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGtt < 1:891983/93‑1 (MQ=255)
tCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTtc < 1:3752765/93‑1 (MQ=255)
tCCCCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTtc < 1:1874897/93‑1 (MQ=255)
cgccgccgccgcAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGGTAACGCCCTTTCTTTGGCCATTTCGTtctc > 2:2059763/1‑93 (MQ=255)
gcggccgccgcAAAACTGCCCCGGCGATCGATCGCAGCGATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCa < 2:4057535/90‑1 (MQ=255)
cccccgccgcAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCAt < 2:2531148/90‑1 (MQ=255)
ccgccgcAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCa > 1:1821995/1‑93 (MQ=255)
gccgcAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTCGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAgg > 1:3306335/1‑93 (MQ=255)
gccgcAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAgg > 2:4596675/1‑93 (MQ=255)
gccgcAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAgg < 2:52062/93‑1 (MQ=255)
cgcAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGaa > 1:1430311/1‑93 (MQ=255)
cgcAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGaa < 2:4648252/93‑1 (MQ=255)
gcAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGaaa < 1:2005892/93‑1 (MQ=255)
gcAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGATTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGaaa > 1:1315456/1‑93 (MQ=255)
aaaaCTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAAtt > 2:2281097/1‑93 (MQ=255)
aaaCTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAAttt < 2:1388909/93‑1 (MQ=255)
aCTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGa > 1:2139799/1‑93 (MQ=255)
aCTCCCCCGGCGATCGATCACATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTGCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGa < 1:266675/93‑1 (MQ=255)
cTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGaa < 1:2623704/93‑1 (MQ=255)
cTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGaa < 2:1008130/93‑1 (MQ=255)
tGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAAc > 1:3500934/1‑93 (MQ=255)
tGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAAc < 1:3443959/93‑1 (MQ=255)
cccccGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACa < 2:1682255/92‑1 (MQ=255)
cccGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATa > 1:172765/1‑93 (MQ=255)
cccGGCGATCGATCGCATCCATAACCCGTAGTACTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATa > 2:899757/1‑93 (MQ=255)
ccGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATAc < 2:1940861/93‑1 (MQ=255)
ccGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATAc < 1:3549399/93‑1 (MQ=255)
ccGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATAc < 1:588393/93‑1 (MQ=255)
cGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAATGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATAcc < 2:387890/93‑1 (MQ=255)
ggCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGGACATACCg < 2:2911253/93‑1 (MQ=255)
gatcgatcGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGc > 2:433164/1‑93 (MQ=255)
atcgatcgCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCa > 2:1190766/1‑93 (MQ=255)
cgatcgCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGa < 2:2321399/93‑1 (MQ=255)
atcgCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAat < 2:1749369/93‑1 (MQ=255)
atcgCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAat > 1:4127331/1‑93 (MQ=255)
atcgAATCCATAACCCGAAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAAAATACCGGGCAGAat > 2:2192245/1‑93 (MQ=255)
tcgCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAata < 2:1412822/93‑1 (MQ=255)
cgCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAatat < 1:4428223/93‑1 (MQ=255)
gCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATc < 1:1682692/93‑1 (MQ=255)
gCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATc < 2:3293150/93‑1 (MQ=255)
aTCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTg < 1:3961114/93‑1 (MQ=255)
aTCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTg > 1:355104/1‑93 (MQ=255)
tCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTgg < 2:3779493/93‑1 (MQ=255)
tCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTgg > 1:3079335/1‑93 (MQ=255)
tCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTgg < 2:3102308/93‑1 (MQ=255)
aTAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTa > 1:2889862/1‑93 (MQ=255)
aTAACCCGTAGTGCTTCCAGCGTTAACGCCATTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTa > 2:272810/1‑93 (MQ=255)
tAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTaa > 2:3265089/1‑93 (MQ=255)
aaCCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAAc < 2:2445271/93‑1 (MQ=255)
aaCCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAAc < 2:1877851/93‑1 (MQ=255)
aaCCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAAc < 2:1538506/93‑1 (MQ=255)
aCCCGTAGTGCTTCCAGCGTTAACGCCATTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACa < 2:4519094/93‑1 (MQ=255)
cccTTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGTCAGAATATCTGGCTAACaa < 2:1096673/93‑1 (MQ=255)
cccGTAGTGCTTCCAGCGTTAATGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACaa < 2:3635929/93‑1 (MQ=255)
cccGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACaa < 2:282232/93‑1 (MQ=255)
cccGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACaa < 1:2750916/93‑1 (MQ=255)
cccGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACaa < 2:4404604/93‑1 (MQ=255)
ccGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAAt > 1:79233/1‑93 (MQ=255)
gTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGt > 1:4642557/1‑93 (MQ=255)
tAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTa < 2:2678050/93‑1 (MQ=255)
tAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTa > 1:2781141/1‑93 (MQ=255)
gTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGTACATACCGGGCAGAATATCTGGCTAACAATGTAGc > 2:746329/1‑93 (MQ=255)
gTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGc < 1:3238601/93‑1 (MQ=255)
gCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTAGCTAACAATGTAGCGt > 1:2041868/1‑93 (MQ=255)
ttCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTcc < 1:1613905/93‑1 (MQ=255)
tCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCa < 1:1966845/93‑1 (MQ=255)
ccAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAg > 1:4240263/1‑93 (MQ=255)
cAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGc > 1:3590800/1‑93 (MQ=255)
gCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGccc > 2:4263365/1‑93 (MQ=255)
gCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGccc > 2:4098631/1‑93 (MQ=255)
gTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCt > 2:460408/1‑93 (MQ=255)
gTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCt > 1:4531495/1‑93 (MQ=255)
gTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCt > 1:2275935/1‑93 (MQ=255)
ttAATGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCtt > 2:640866/1‑93 (MQ=255)
tAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTa < 1:3044258/93‑1 (MQ=255)
tAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTa > 2:2624806/1‑93 (MQ=255)
|
GGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAATGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTAC > NC_000913/3251747‑3251927
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCGGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAATGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTACCA > NC_000913/3251744‑3251929
|
gacagaagtaacgcgtcgaagcgCATCCGCCGCCGCCGAAAACCTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAAC < SRR4302535.520538/71‑1 (MQ=60)
TGCGGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAAC < SRR4302535.2074774/94‑1 (MQ=60)
TGCGGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAAC < SRR4302535.3723245/94‑1 (MQ=60)
GGCGGAAGGCCTGCGTCCCAGCTCACCCGCCGCCGTCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAAC < SRR4302535.4270619/94‑1 (MQ=60)
GCGTAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACG < SRR4302535.511663/94‑1 (MQ=60)
GCGGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACG < SRR4302535.1033277/94‑1 (MQ=60)
CGGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGC > SRR4302535.811368/1‑94 (MQ=60)
CGGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGC < SRR4302535.1254124/94‑1 (MQ=60)
CGGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGC > SRR4302535.1654001/1‑94 (MQ=60)
GGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCC > SRR4302535.2239682/1‑94 (MQ=60)
GGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCC < SRR4302535.2322204/94‑1 (MQ=60)
GGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCC > SRR4302535.1445780/1‑94 (MQ=60)
AAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCT > SRR4302535.4095717/1‑94 (MQ=60)
AAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCT > SRR4302535.4070901/1‑94 (MQ=60)
AAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCT > SRR4302535.3539932/1‑94 (MQ=60)
CCCGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCT < SRR4302535.3211101/94‑1 (MQ=60)
CACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTTT < SRR4302535.4454837/94‑1 (MQ=60)
CGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTT < SRR4302535.3929315/94‑1 (MQ=60)
CGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGG > SRR4302535.1731096/1‑94 (MQ=60)
GTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGC < SRR4302535.4629186/94‑1 (MQ=60)
GTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGC < SRR4302535.1597250/94‑1 (MQ=60)
TCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCC > SRR4302535.2495275/1‑94 (MQ=60)
TCCCAGCCCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCC < SRR4302535.3591518/94‑1 (MQ=60)
CCCAGCTCATCAGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCgt > SRR4302535.690065/1‑92 (MQ=60)
CAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCAGAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATT < SRR4302535.2537754/94‑1 (MQ=60)
AGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTT < SRR4302535.4596851/94‑1 (MQ=60)
AGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTT > SRR4302535.3112244/1‑94 (MQ=60)
GCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTC > SRR4302535.1233341/1‑94 (MQ=60)
CCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAATGCCCTTTCTTTGGCCATTTC < SRR4302535.2675151/94‑1 (MQ=60)
CTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCG > SRR4302535.3932217/1‑94 (MQ=60)
TCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGT > SRR4302535.1088250/1‑94 (MQ=60)
CATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTT < SRR4302535.4369072/94‑1 (MQ=60)
ATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTC < SRR4302535.898303/94‑1 (MQ=60)
TCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCT < SRR4302535.3778736/94‑1 (MQ=60)
TCCCCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCT < SRR4302535.1888402/94‑1 (MQ=60)
GCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCAT < SRR4302535.3454329/94‑1 (MQ=60)
CCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAATGCCCTTTCTTTGGCCATTTCGTTCTCATT < SRR4302535.3099855/94‑1 (MQ=60)
CGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTC < SRR4302535.4259268/94‑1 (MQ=60)
GCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCA > SRR4302535.1835155/1‑94 (MQ=60)
CCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCA < SRR4302535.587914/94‑1 (MQ=60)
CGCCTCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGG < SRR4302535.2848031/94‑1 (MQ=60)
CGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTCGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGG > SRR4302535.3329342/1‑94 (MQ=60)
CGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGG > SRR4302535.2037766/1‑94 (MQ=60)
CGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGG < SRR4302535.4658969/94‑1 (MQ=60)
CCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAA > SRR4302535.1440516/1‑94 (MQ=60)
CCGCAAAACTGACCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAA < SRR4302535.771968/94‑1 (MQ=60)
CGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAA < SRR4302535.3508805/94‑1 (MQ=60)
CGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAA > SRR4302535.2939879/1‑94 (MQ=60)
CGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGATTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAA > SRR4302535.1324853/1‑94 (MQ=60)
GCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAAT > SRR4302535.2782746/1‑94 (MQ=60)
GCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAAT < SRR4302535.2020340/94‑1 (MQ=60)
AAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTT < SRR4302535.4034439/94‑1 (MQ=60)
AAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTG < SRR4302535.384224/94‑1 (MQ=60)
AAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTG > SRR4302535.1427453/1‑94 (MQ=60)
AACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGA > SRR4302535.2155207/1‑94 (MQ=60)
ACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAA < SRR4302535.1132581/94‑1 (MQ=60)
ACTCCCCCGGCGATCGATCACATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTGCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAA < SRR4302535.268528/94‑1 (MQ=60)
CTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAAC < SRR4302535.2642506/94‑1 (MQ=60)
CTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAAC > SRR4302535.3525273/1‑94 (MQ=60)
TGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACA < SRR4302535.3467908/94‑1 (MQ=60)
GCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACAT < SRR4302535.224755/94‑1 (MQ=60)
GCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACAT < SRR4302535.6601/94‑1 (MQ=60)
GCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACAT < SRR4302535.2172606/94‑1 (MQ=60)
CCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATA > SRR4302535.173960/1‑94 (MQ=60)
CCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACC < SRR4302535.3574034/94‑1 (MQ=60)
CCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACC < SRR4302535.592519/94‑1 (MQ=60)
CGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCG < SRR4302535.2180342/94‑1 (MQ=60)
GCGATCGATCGCATCCATAACCCGTAGTTCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGG < SRR4302535.2688110/94‑1 (MQ=60)
GCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGG < SRR4302535.2688109/94‑1 (MQ=60)
CGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGC < SRR4302535.1412415/94‑1 (MQ=60)
GATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCA > SRR4302535.1244992/1‑94 (MQ=60)
GATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCA > SRR4302535.2076794/1‑94 (MQ=60)
GATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCA < SRR4302535.540295/94‑1 (MQ=60)
GATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAAAGCCCTTTCTTTGGGCATTTAGTTATCATTCAGGAAATTTGAACATACCGGGCA > SRR4302535.1879265/1‑94 (MQ=60)
ATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAG < SRR4302535.3556977/94‑1 (MQ=60)
ATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAG < SRR4302535.1943201/94‑1 (MQ=60)
CGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAA > SRR4302535.3347402/1‑94 (MQ=60)
GATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAAT > SRR4302535.4155574/1‑94 (MQ=60)
ATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATA < SRR4302535.2575883/94‑1 (MQ=60)
CGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATC < SRR4302535.4458558/94‑1 (MQ=60)
CGCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATC < SRR4302535.1821727/94‑1 (MQ=60)
GCATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCT < SRR4302535.1694879/94‑1 (MQ=60)
CATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTG > SRR4302535.357555/1‑94 (MQ=60)
CATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATAACGGGCAGACTATCTG > SRR4302535.357554/1‑94 (MQ=60)
ATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGG < SRR4302535.3988164/94‑1 (MQ=60)
ATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGG > SRR4302535.3100808/1‑94 (MQ=60)
ATCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGG < SRR4302535.2017571/94‑1 (MQ=60)
TCCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGC < SRR4302535.1637442/94‑1 (MQ=60)
CCATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCT > SRR4302535.3761310/1‑94 (MQ=60)
CATAACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTA > SRR4302535.2910305/1‑94 (MQ=60)
AACCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACA > SRR4302535.3674756/1‑94 (MQ=60)
CCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAAT < SRR4302535.2770525/94‑1 (MQ=60)
CCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAAT > SRR4302535.79799/1‑94 (MQ=60)
CCCGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAAT < SRR4302535.305318/94‑1 (MQ=60)
CGTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGT > SRR4302535.4674024/1‑94 (MQ=60)
GTAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTA > SRR4302535.2800939/1‑94 (MQ=60)
TAGTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAG > SRR4302535.4465494/1‑94 (MQ=60)
AGTGCTTCCAGCGTTAACGCCCTTTCTTCGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGC < SRR4302535.4201187/94‑1 (MQ=60)
GTGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCG < SRR4302535.3261086/94‑1 (MQ=60)
TGCTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTAGCTAACAATGTAGCGT > SRR4302535.2056577/1‑94 (MQ=60)
CTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCC > SRR4302535.1603044/1‑94 (MQ=60)
CTTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTAC > SRR4302535.200755/1‑94 (MQ=60)
TTCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCA < SRR4302535.1625537/94‑1 (MQ=60)
TCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAG > SRR4302535.76126/1‑94 (MQ=60)
TCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAG > SRR4302535.4269286/1‑94 (MQ=60)
TCCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAG < SRR4302535.1981022/94‑1 (MQ=60)
CCAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGC > SRR4302535.3615705/1‑94 (MQ=60)
CAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCC < SRR4302535.3268186/94‑1 (MQ=60)
CAGCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCC < SRR4302535.4030146/94‑1 (MQ=60)
GCGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCC < SRR4302535.3134658/94‑1 (MQ=60)
CGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCT > SRR4302535.4562512/1‑94 (MQ=60)
CGTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCT > SRR4302535.2292183/1‑94 (MQ=60)
GTTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTT < SRR4302535.4561506/94‑1 (MQ=60)
TTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTA < SRR4302535.963560/94‑1 (MQ=60)
TTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTA > SRR4302535.4353293/1‑94 (MQ=60)
TTAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTA > SRR4302535.1818896/1‑94 (MQ=60)
TAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTAC < SRR4302535.3065583/94‑1 (MQ=60)
TAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTAC > SRR4302535.2412828/1‑94 (MQ=60)
TAACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTAC < SRR4302535.3247932/94‑1 (MQ=60)
AACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTACC > SRR4302535.1757879/1‑94 (MQ=60)
ACGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTACCA < SRR4302535.848263/94‑1 (MQ=60)
|
TGCGGAAGGCACGCGTCCCAGCTCATCCGCCGCCGCCGCAAAACTGCCCCGGCGATCGATCGCATCCATAACCCGTAGTGCTTCCAGCGTTAATGCCCTTTCTTTGGCCATTTCGTTCTCATTCAGGAAATTTGAACATACCGGGCAGAATATCTGGCTAACAATGTAGCGTCCAGCCCCTTACCA > NC_000913/3251744‑3251929
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
