Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,289,828 |
G→A |
V283I (GTA→ATA) |
yraK → |
putative fimbrial protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,289,828 | 0 | G | A | 99.5%
| 785.4
/ NA
| 214 | V283I (GTA→ATA) | yraK | putative fimbrial protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (108/105); minor base C (1/0); total (109/105) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 234 total aligned reads displayed.
ACTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGA > NC_000913/3289738‑3289917
|
aCTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGata < 2:158913/93‑1 (MQ=255)
cTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGatag > 2:722631/1‑93 (MQ=255)
tCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGatagt < 1:4031890/93‑1 (MQ=255)
tCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGatagt < 1:1607118/93‑1 (MQ=255)
ccAGTAGGCTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGatagta < 1:1474017/93‑1 (MQ=255)
ccAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGatagta < 1:1194886/93‑1 (MQ=255)
cAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGAtagtag < 1:4271320/93‑1 (MQ=255)
aGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGa < 1:1357/93‑1 (MQ=255)
aGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGa < 1:3309003/93‑1 (MQ=255)
aGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGa < 2:61349/93‑1 (MQ=255)
gTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGAc < 2:2874750/93‑1 (MQ=255)
aGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCa > 1:3799469/1‑93 (MQ=255)
gACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAg > 2:3580913/1‑93 (MQ=255)
aCTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGt > 2:3041684/1‑93 (MQ=255)
cTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTa < 2:902423/93‑1 (MQ=255)
tttGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTAc > 2:460856/1‑93 (MQ=255)
tttGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTAc > 1:142137/1‑93 (MQ=255)
ttGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACa > 2:1912014/1‑93 (MQ=255)
tGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACaa < 1:4504229/93‑1 (MQ=255)
gATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAAc > 1:2851810/1‑93 (MQ=255)
atatCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAAcc < 1:4407628/93‑1 (MQ=255)
atatCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAAcc < 2:3058483/93‑1 (MQ=255)
atatCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAAcc < 1:1749799/93‑1 (MQ=255)
tatCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCt > 2:11615/1‑93 (MQ=255)
atCACTTATGACTGTGGTGATACTTCAAAGATTAAAACCTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTg < 2:3623628/93‑1 (MQ=255)
cACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGt < 2:618946/93‑1 (MQ=255)
aCTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTc > 1:4192274/1‑93 (MQ=255)
cTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCg > 2:1841111/1‑93 (MQ=255)
ttATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGc > 2:2373799/1‑93 (MQ=255)
ttATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGc > 1:2133443/1‑93 (MQ=255)
tATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGcc > 1:2957352/1‑93 (MQ=255)
aTGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCa > 2:2942124/1‑93 (MQ=255)
tGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAg < 2:1095668/93‑1 (MQ=255)
tGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAg < 2:3950461/93‑1 (MQ=255)
tgtgGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCga > 2:1187492/1‑93 (MQ=255)
gtggtgATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCgaa < 1:1124460/93‑1 (MQ=255)
gtggtgATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCgaa < 2:2304652/93‑1 (MQ=255)
tggtgATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCgaag > 2:1823131/1‑93 (MQ=255)
tggtgATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGGACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCgaag > 1:2616197/1‑93 (MQ=255)
ggtgATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCgaaga < 2:3395994/93‑1 (MQ=255)
gtgATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCgaagaa < 1:50094/93‑1 (MQ=255)
gtgATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCgaagaa > 2:1804573/1‑93 (MQ=255)
gtgATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCgaagaa > 1:2560964/1‑93 (MQ=255)
tgATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGaagaag > 1:1583670/1‑93 (MQ=255)
gATACTTCAAAGAGTAAATACTCGTTGCAAATGCGTATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGt < 2:3651399/93‑1 (MQ=255)
aTACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGtt < 1:3732727/93‑1 (MQ=255)
aTACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGtt < 1:3359950/93‑1 (MQ=255)
tACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTc > 2:1027736/1‑93 (MQ=255)
aCTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCa > 2:2677395/1‑93 (MQ=255)
aCTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCa < 2:4340199/93‑1 (MQ=255)
aCTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCa < 1:3183040/93‑1 (MQ=255)
ttCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGa < 1:2931002/93‑1 (MQ=255)
tCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGaa > 2:2160728/1‑92 (MQ=255)
tCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGAc > 1:1003659/1‑93 (MQ=255)
aaaGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACaa > 1:1317535/1‑93 (MQ=255)
aaGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAAt > 2:3778160/1‑93 (MQ=255)
aGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAAtg > 2:504554/1‑93 (MQ=255)
aGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAAtg > 1:4587332/1‑93 (MQ=255)
aTTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAAtgtg > 1:2746646/1‑93 (MQ=255)
aTTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAAtgtg < 2:132368/93‑1 (MQ=255)
aTTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGGTCAGACAAtgtc > 1:1436453/1‑92 (MQ=255)
ttAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGc > 2:1993245/1‑93 (MQ=255)
tAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGCAGTTCAGACAAtgtgac > 2:4297832/1‑91 (MQ=255)
tAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGcc < 2:385335/93‑1 (MQ=255)
aaaCTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGa < 2:1454294/93‑1 (MQ=255)
aaaCTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGa < 2:2631618/93‑1 (MQ=255)
aaCTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGAt > 2:694683/1‑93 (MQ=255)
aaCTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGAt > 2:1927576/1‑93 (MQ=255)
aaCTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGAt > 1:4060108/1‑93 (MQ=255)
aCTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATg > 2:2759111/1‑93 (MQ=255)
cTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGt < 2:4079824/93‑1 (MQ=255)
tCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTc > 2:2567658/1‑93 (MQ=255)
tCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTc < 1:1917538/93‑1 (MQ=255)
tCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTc > 1:2343554/1‑93 (MQ=255)
tCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTc > 2:86944/1‑93 (MQ=255)
cGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCg < 1:3275196/93‑1 (MQ=255)
gTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCgg > 2:2230730/1‑93 (MQ=255)
gTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCgg > 2:3166846/1‑93 (MQ=255)
gTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCgg < 2:3345454/93‑1 (MQ=255)
ttGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGt > 2:758758/1‑93 (MQ=255)
ttGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGt > 2:3458523/1‑93 (MQ=255)
ttGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGt > 1:755046/1‑93 (MQ=255)
gCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTAt < 1:2801682/93‑1 (MQ=255)
aaaTGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTc < 1:1845301/93‑1 (MQ=255)
aaaTGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTc > 1:241921/1‑93 (MQ=255)
tGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTa < 2:1535032/93‑1 (MQ=255)
gACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAAt > 1:211073/1‑93 (MQ=255)
aCGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAAtc > 1:3459834/1‑93 (MQ=255)
aCGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAAtc < 1:656163/93‑1 (MQ=255)
aCGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAAtc < 2:4146647/93‑1 (MQ=255)
aCGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTAGTATTGAAAAtc > 1:1080304/1‑93 (MQ=255)
ggTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAAtctc < 1:3723515/93‑1 (MQ=255)
ggTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAAtctc > 2:3308755/1‑93 (MQ=255)
gTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTcg < 1:3074694/93‑1 (MQ=255)
gTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTcg < 1:2706820/93‑1 (MQ=255)
gTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTcg < 1:772784/93‑1 (MQ=255)
tACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTcgg > 1:3974694/1‑93 (MQ=255)
cAACTGGGATAGGAGACAAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTcggcg < 1:3580913/93‑1 (MQ=255)
aaCTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTcggcgg < 2:4377345/93‑1 (MQ=255)
aCTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTcggcggc > 2:2210548/1‑93 (MQ=255)
|
ACTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGA > NC_000913/3289738‑3289917
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTTACTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTG > NC_000913/3289735‑3289921
|
TTTACTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGA > SRR4302535.2168220/1‑94 (MQ=60)
TTACTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAACAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGAT > SRR4302535.1437499/1‑94 (MQ=60)
TTACTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGAT < SRR4302535.994937/94‑1 (MQ=60)
TTACTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGAT < SRR4302535.4248926/94‑1 (MQ=60)
TTACTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGAT < SRR4302535.3978411/94‑1 (MQ=60)
CTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGT > SRR4302535.3651841/1‑94 (MQ=60)
CTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGT < SRR4302535.1302326/94‑1 (MQ=60)
TCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTA < SRR4302535.1082974/94‑1 (MQ=60)
TCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTA < SRR4302535.4198857/94‑1 (MQ=60)
TCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTA < SRR4302535.4059472/94‑1 (MQ=60)
TCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTA > SRR4302535.3546756/1‑94 (MQ=60)
TCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTA < SRR4302535.1618711/94‑1 (MQ=60)
TCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTA < SRR4302535.1601581/94‑1 (MQ=60)
CCAGTAGGCTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAG < SRR4302535.1484569/94‑1 (MQ=60)
CCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAG < SRR4302535.1203444/94‑1 (MQ=60)
CCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAG > SRR4302535.2889412/1‑94 (MQ=60)
CAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGA < SRR4302535.4300560/94‑1 (MQ=60)
AGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGAC < SRR4302535.3332028/94‑1 (MQ=60)
AGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGAC < SRR4302535.1374/94‑1 (MQ=60)
GTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACC < SRR4302535.743640/94‑1 (MQ=60)
GTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACC < SRR4302535.2139612/94‑1 (MQ=60)
TAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCA > SRR4302535.3825660/1‑94 (MQ=60)
GACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGT > SRR4302535.1108211/1‑94 (MQ=60)
CTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTAC > SRR4302535.143132/1‑94 (MQ=60)
TTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACA < SRR4302535.1151989/94‑1 (MQ=60)
TGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAAC < SRR4302535.4022552/94‑1 (MQ=60)
TGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAAC > SRR4302535.2872017/1‑94 (MQ=60)
TGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAAC < SRR4302535.4535155/94‑1 (MQ=60)
TGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAAC > SRR4302535.2640988/1‑94 (MQ=60)
GATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACC < SRR4302535.1778231/94‑1 (MQ=60)
GATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACC > SRR4302535.4247771/1‑94 (MQ=60)
ATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCT < SRR4302535.1382296/94‑1 (MQ=60)
ATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCT < SRR4302535.1902883/94‑1 (MQ=60)
ATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCT < SRR4302535.4437790/94‑1 (MQ=60)
ATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCT < SRR4302535.1762455/94‑1 (MQ=60)
TATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTG < SRR4302535.3918003/94‑1 (MQ=60)
TATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTG > SRR4302535.2578133/1‑94 (MQ=60)
ATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGG > SRR4302535.4535049/1‑94 (MQ=60)
ATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGG < SRR4302535.1455084/94‑1 (MQ=60)
TCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGT < SRR4302535.3752107/94‑1 (MQ=60)
TCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGT > SRR4302535.4534647/1‑94 (MQ=60)
CACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTC > SRR4302535.4220963/1‑94 (MQ=60)
CACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTC < SRR4302535.3802892/94‑1 (MQ=60)
CACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTC > SRR4302535.4614573/1‑94 (MQ=60)
CACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTC < SRR4302535.3437618/94‑1 (MQ=60)
CACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTC < SRR4302535.2730994/94‑1 (MQ=60)
CTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGC > SRR4302535.1430188/1‑94 (MQ=60)
CTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGC > SRR4302535.1444951/1‑94 (MQ=60)
CTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGC > SRR4302535.2148819/1‑94 (MQ=60)
TTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCC > SRR4302535.1136661/1‑94 (MQ=60)
TTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCC > SRR4302535.2978122/1‑94 (MQ=60)
TGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGG < SRR4302535.3995961/94‑1 (MQ=60)
CTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGA > SRR4302535.1350068/1‑94 (MQ=60)
GTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAG < SRR4302535.1132484/94‑1 (MQ=60)
GTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGGACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAG > SRR4302535.2634956/1‑94 (MQ=60)
TGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGA > SRR4302535.4433120/1‑94 (MQ=60)
TGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGA > SRR4302535.1589687/1‑94 (MQ=60)
GGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAA < SRR4302535.3366342/94‑1 (MQ=60)
GGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAA > SRR4302535.2579402/1‑94 (MQ=60)
GTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAG > SRR4302535.1595099/1‑94 (MQ=60)
GTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAG < SRR4302535.50465/94‑1 (MQ=60)
GATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTT < SRR4302535.3202802/94‑1 (MQ=60)
ATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTC < SRR4302535.3758570/94‑1 (MQ=60)
ATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTC < SRR4302535.3383337/94‑1 (MQ=60)
TACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCA < SRR4302535.2390127/94‑1 (MQ=60)
ACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAG < SRR4302535.3205033/94‑1 (MQ=60)
TTCAAAGATTAAAAACTCGTTGCAAGTGCGCATTGTCGGTACAACTGGGATACTGGATCACTACAACCTGGTCGCCAGGCGAAGtagctcaacc > SRR4302535.167722/1‑84 (MQ=46)
TTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGAC > SRR4302535.1010784/1‑94 (MQ=60)
TTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGAC < SRR4302535.2951642/94‑1 (MQ=60)
CAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAA > SRR4302535.1326947/1‑94 (MQ=60)
AAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATG > SRR4302535.33081/1‑94 (MQ=60)
AAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATG > SRR4302535.2944571/1‑94 (MQ=60)
AAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATG > SRR4302535.4618569/1‑94 (MQ=60)
AGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGT > SRR4302535.3202134/1‑94 (MQ=60)
GATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTG < SRR4302535.600228/94‑1 (MQ=60)
GATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTG > SRR4302535.2766225/1‑94 (MQ=60)
GATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGGTCAGACAATGTC > SRR4302535.1446715/1‑94 (MQ=60)
AAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGAT > SRR4302535.3211013/1‑94 (MQ=60)
AAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGAT > SRR4302535.4087897/1‑94 (MQ=60)
ACTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGT < SRR4302535.2956919/94‑1 (MQ=60)
CTCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTC > SRR4302535.2360324/1‑94 (MQ=60)
TCGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCG < SRR4302535.1931355/94‑1 (MQ=60)
CGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGG > SRR4302535.3349846/1‑94 (MQ=60)
CGTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGG < SRR4302535.3297944/94‑1 (MQ=60)
GTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGT > SRR4302535.2773837/1‑94 (MQ=60)
GTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGT > SRR4302535.158404/1‑94 (MQ=60)
GTTGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGT > SRR4302535.760363/1‑94 (MQ=60)
TGCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTAT < SRR4302535.2297300/94‑1 (MQ=60)
GCAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATT < SRR4302535.2821610/94‑1 (MQ=60)
CAAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTC > SRR4302535.243580/1‑94 (MQ=60)
AAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCG < SRR4302535.599921/94‑1 (MQ=60)
AAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCG < SRR4302535.765394/94‑1 (MQ=60)
AAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCG > SRR4302535.1790754/1‑94 (MQ=60)
AAATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCG < SRR4302535.1858601/94‑1 (MQ=60)
ATGCGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTA > SRR4302535.3045594/1‑94 (MQ=60)
CGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTG > SRR4302535.4664534/1‑94 (MQ=60)
CGCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTG < SRR4302535.2129589/94‑1 (MQ=60)
GCATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGA < SRR4302535.4123830/94‑1 (MQ=60)
ATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAA > SRR4302535.83997/1‑94 (MQ=60)
ATCGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAA > SRR4302535.2856988/1‑94 (MQ=60)
CGACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAAT > SRR4302535.212524/1‑94 (MQ=60)
GACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATC > SRR4302535.3483888/1‑94 (MQ=60)
GACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATC > SRR4302535.2762604/1‑94 (MQ=60)
GACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTAGTATTGAAAATC > SRR4302535.1087989/1‑94 (MQ=60)
GCGGTACAACGGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCTAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCT < SRR4302535.3655531/94‑1 (MQ=60)
ACGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCT < SRR4302535.660744/94‑1 (MQ=60)
CGGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCTGTATTTGTATTGAAAATCTC > SRR4302535.4065614/1‑94 (MQ=60)
GGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCG < SRR4302535.2088512/94‑1 (MQ=60)
GGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCG < SRR4302535.806158/94‑1 (MQ=60)
GGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCG < SRR4302535.3749309/94‑1 (MQ=60)
GGTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCG < SRR4302535.2587768/94‑1 (MQ=60)
GTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGG < SRR4302535.2726163/94‑1 (MQ=60)
GTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGG < SRR4302535.778219/94‑1 (MQ=60)
GTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGG > SRR4302535.4001845/1‑94 (MQ=60)
GTACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGG < SRR4302535.3096153/94‑1 (MQ=60)
ACAACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCG < SRR4302535.1634737/94‑1 (MQ=60)
CAACTGGGATAGGAGACAAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGG < SRR4302535.3605741/94‑1 (MQ=60)
AACTGGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGTCAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGC < SRR4302535.2526501/94‑1 (MQ=60)
GGGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAG > SRR4302535.639529/1‑94 (MQ=60)
GGATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGT > SRR4302535.4678356/1‑94 (MQ=60)
GATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTT < SRR4302535.4495721/94‑1 (MQ=60)
ATAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTG < SRR4302535.1178460/94‑1 (MQ=60)
|
TTTACTCCAGTAGACTTTGATATCACTTATGACTGTGGTGATACTTCAAAGATTAAAAACTCGTTGCAAATGCGCATCGACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTG > NC_000913/3289735‑3289921
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
