Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,302,454 |
(C)7→8 |
coding (1005/1245 nt) |
mtr ← |
tryptophan‑specific transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,302,447 | 1 | . | C | 94.3%
| 468.0
/ 21.3
| 159 | coding (1012/1245 nt) | mtr | tryptophan‑specific transport protein |
| Reads supporting (aligned to +/- strand): ref base . (6/3); new base C (77/71); total (85/74) |
| Fisher's exact test for biased strand distribution p-value = 5.02e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.31e-01 |
Only 100 of 192 total aligned reads displayed.
ACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGT > NC_000913/3302355‑3302539
|
aCGGGCTAACAGCGCCGGAACAATTCCCGCTCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAg < 2:792459/93‑1 (MQ=255)
gggCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑cc < 2:2658288/93‑1 (MQ=255)
gggCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑cc < 2:4126529/93‑1 (MQ=255)
ggCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑ccc < 1:4078725/93‑1 (MQ=255)
gCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑cccc < 2:3294480/93‑1 (MQ=255)
cTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑ccccc > 1:3748888/1‑93 (MQ=255)
cTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑ccccc > 2:4566202/1‑93 (MQ=255)
tAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑cccccc > 1:3850749/1‑93 (MQ=255)
aaCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑ccccccc < 2:1602508/93‑1 (MQ=255)
aCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑cccccccc > 1:1020412/1‑92 (MQ=255)
aCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑cccccccc > 1:4524115/1‑92 (MQ=255)
cAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑cccccccca > 2:2009803/1‑91 (MQ=255)
cAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑cccccccca > 1:921022/1‑91 (MQ=255)
gcgcCGGACCAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑ccccccccaca < 2:280075/93‑5 (MQ=255)
gcgcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑ccccccccaca < 2:117257/93‑5 (MQ=255)
gcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAAc < 2:3705083/93‑1 (MQ=255)
gcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAAc > 1:1421018/1‑93 (MQ=255)
gcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAAc < 1:3215810/93‑1 (MQ=255)
ggAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTgg > 2:4510300/1‑93 (MQ=255)
gAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGc > 2:889041/1‑93 (MQ=255)
aaCAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCg < 2:2764913/93‑1 (MQ=255)
aaCAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCg < 2:3659143/93‑1 (MQ=255)
aCAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCgg > 1:211647/1‑93 (MQ=255)
aaTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCgggg < 2:2896380/93‑1 (MQ=255)
aaTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGACCCCACCACAACTGGCgggg > 2:2124619/1‑93 (MQ=255)
aTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGc > 2:846723/1‑93 (MQ=255)
aTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGc > 1:451483/1‑93 (MQ=255)
aTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGc > 1:4290649/1‑93 (MQ=255)
ttGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCa > 2:2169086/1‑93 (MQ=255)
tGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCaa < 1:1951635/93‑1 (MQ=255)
ccgccCAGATGTTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAg < 2:2401984/93‑1 (MQ=255)
cgccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAAAAGCCCCCCCCACAACTGGCGGGGCAAAgg > 2:1005530/1‑93 (MQ=255)
gccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGt > 2:1488061/1‑93 (MQ=255)
cccAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTc > 2:3988215/1‑93 (MQ=255)
cAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAg < 1:3530479/93‑1 (MQ=255)
aGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGc > 1:3961920/1‑93 (MQ=255)
gATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCa > 1:4253513/1‑93 (MQ=255)
gATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCa < 1:1483027/93‑1 (MQ=255)
aTGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCaa < 1:953928/93‑1 (MQ=255)
aTGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCaa > 1:343434/1‑93 (MQ=255)
aTGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCaa < 1:3405091/93‑1 (MQ=255)
tGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGTACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAAt < 1:3300052/93‑1 (MQ=255)
tGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAAt > 1:1807585/1‑93 (MQ=255)
tGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGGCAGCAAt > 2:1358889/1‑93 (MQ=255)
gTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGc < 2:4397690/93‑1 (MQ=255)
tAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGcc < 1:3730040/93‑1 (MQ=255)
tAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGt < 1:1876434/93‑1 (MQ=255)
aGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCg < 2:3768090/93‑1 (MQ=255)
cGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGttt > 2:3084046/1‑93 (MQ=255)
gCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGtttt < 2:4499462/93‑1 (MQ=255)
cTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGtttta > 1:1917819/1‑92 (MQ=255)
cTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTc < 2:2228371/93‑1 (MQ=255)
tAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCa > 1:1729004/1‑93 (MQ=255)
tAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCa > 2:655190/1‑93 (MQ=255)
aaaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCaa > 1:1665090/1‑93 (MQ=255)
aaaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCaa < 1:2969198/93‑1 (MQ=255)
aaaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAg > 1:3984910/1‑93 (MQ=255)
aaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAg > 1:854842/1‑93 (MQ=255)
aaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAg > 1:2000495/1‑93 (MQ=255)
aaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAg < 1:2572759/93‑1 (MQ=255)
aCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATTCCGTTTTCAAGc > 2:437215/1‑93 (MQ=255)
cAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCgg > 1:1149995/1‑93 (MQ=255)
cAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGCTTTTAAGCgg > 2:1280374/1‑93 (MQ=255)
cATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCCCAACTGGCGGGGCAAAGGTCAGCAATGCCGATTTCAAGCGGccc > 2:687199/1‑93 (MQ=255)
cATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGccc < 2:1692020/93‑1 (MQ=255)
aTAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCca > 1:784207/1‑93 (MQ=255)
tAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCcac > 2:3021812/1‑93 (MQ=255)
tAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCcaca > 1:1028438/1‑93 (MQ=255)
aaCCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCcaca > 1:2736162/1‑93 (MQ=255)
aaCCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCcaca < 1:3662925/93‑1 (MQ=255)
aCCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAg < 2:1831657/93‑1 (MQ=255)
aCCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAg < 2:1230544/93‑1 (MQ=255)
aCCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAg < 2:1112088/93‑1 (MQ=255)
ccAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGc < 2:4431967/93‑1 (MQ=255)
cAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGcc > 1:651909/1‑93 (MQ=255)
aaTGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCg > 2:533572/1‑93 (MQ=255)
aTGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGa > 1:4574710/1‑93 (MQ=255)
tGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAg < 1:4613117/93‑1 (MQ=255)
ggCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtc > 1:202214/1‑93 (MQ=255)
gCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtc < 2:3841565/93‑1 (MQ=255)
gCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtc < 1:2656197/93‑1 (MQ=255)
gCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtc < 2:4612749/93‑1 (MQ=255)
gCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtc < 2:2935159/93‑1 (MQ=255)
gTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgt > 1:4163636/1‑93 (MQ=255)
tACAGGAACCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgtc < 1:3644779/93‑1 (MQ=255)
aCAGGAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGtcgtcg > 1:2291123/1‑93 (MQ=255)
gAATCCGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAc < 2:1416372/93‑1 (MQ=255)
tCCGTTCGGGAACAACAGCCCCCCCCACAACCGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCaa > 2:344550/1‑93 (MQ=255)
ccGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCaaa < 1:723463/93‑1 (MQ=255)
cGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAAc < 2:1811202/93‑1 (MQ=255)
cGTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAAc < 2:2865893/93‑1 (MQ=255)
gtgcGGGACCAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACa < 2:2233773/90‑1 (MQ=255)
gTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACa > 2:1150046/1‑93 (MQ=255)
gTTCGGGAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACa > 1:290313/1‑93 (MQ=255)
cGGGAACAACAG‑‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCt < 1:4485814/93‑1 (MQ=255)
gggAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATc < 1:3693170/93‑1 (MQ=255)
gggAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATc < 2:3906006/93‑1 (MQ=255)
gggAACAACAGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGCCGTCGAAACCAAACAGATc > 2:4157820/1‑93 (MQ=255)
acaacaGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGcc > 2:4238735/1‑93 (MQ=255)
caacaGCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCa < 2:4187813/93‑1 (MQ=255)
|
ACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGT > NC_000913/3302355‑3302539
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAA > NC_000913/3302362‑3302547
|
AACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CC‑CCCCCC > SRR4302535.1027664/1‑94 (MQ=60)
AACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CC‑CCCCCC > SRR4302535.4555110/1‑94 (MQ=60)
ACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CC‑CCCCCca > SRR4302535.927554/1‑92 (MQ=60)
CGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAAC > SRR4302535.1431162/1‑94 (MQ=60)
CGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAAC > SRR4302535.1738743/1‑94 (MQ=60)
GCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACT < SRR4302535.3238082/94‑1 (MQ=60)
CGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGG > SRR4302535.3480963/1‑94 (MQ=60)
CGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGG < SRR4302535.3769786/94‑1 (MQ=60)
GGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGC > SRR4302535.2639485/1‑94 (MQ=60)
AACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGG > SRR4302535.927571/1‑94 (MQ=60)
AACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGG > SRR4302535.213101/1‑94 (MQ=60)
AATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGC > SRR4302535.454645/1‑94 (MQ=60)
AATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGC > SRR4302535.4319996/1‑94 (MQ=60)
AATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGC > SRR4302535.1920525/1‑94 (MQ=60)
TGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAA < SRR4302535.1965681/94‑1 (MQ=60)
GCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAG < SRR4302535.574023/94‑1 (MQ=60)
CGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGT < SRR4302535.1478361/94‑1 (MQ=60)
CCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CCGCCCCCACAACTGGCGGGGCAAAGGTCA > SRR4302535.4006152/1‑94 (MQ=60)
CCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAG < SRR4302535.4175246/94‑1 (MQ=60)
CAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGC > SRR4302535.3988977/1‑94 (MQ=60)
CAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGC < SRR4302535.3554992/94‑1 (MQ=60)
AGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCA < SRR4302535.4042880/94‑1 (MQ=60)
AGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCA > SRR4302535.4282660/1‑94 (MQ=60)
AGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCA > SRR4302535.2254437/1‑94 (MQ=60)
GATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAA > SRR4302535.345806/1‑94 (MQ=60)
GATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAA < SRR4302535.1493632/94‑1 (MQ=60)
ATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAAT < SRR4302535.960687/94‑1 (MQ=60)
ATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAAT > SRR4302535.1820667/1‑94 (MQ=60)
ATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAAT < SRR4302535.3428786/94‑1 (MQ=60)
TGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGTACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATG < SRR4302535.3323001/94‑1 (MQ=60)
TAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCG < SRR4302535.3755870/94‑1 (MQ=60)
TAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑C‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTT < SRR4302535.1889947/94‑1 (MQ=60)
AGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CC‑CCCCCcacaaactgcgggggaaaaggccacaaatccgt > SRR4302535.2564540/1‑61 (MQ=60)
GCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTT < SRR4302535.4631884/94‑1 (MQ=60)
CCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTT > SRR4302535.3434765/1‑94 (MQ=60)
CCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTT > SRR4302535.2403043/1‑94 (MQ=60)
CCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTT > SRR4302535.2742193/1‑94 (MQ=60)
GCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTA > SRR4302535.1931639/1‑94 (MQ=60)
CTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCA > SRR4302535.1741499/1‑94 (MQ=60)
TAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACGGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAA > SRR4302535.3572187/1‑94 (MQ=60)
TAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAA > SRR4302535.1677138/1‑94 (MQ=60)
TAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG > SRR4302535.4012139/1‑94 (MQ=60)
AAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG > SRR4302535.860866/1‑94 (MQ=60)
AAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG < SRR4302535.2990034/94‑1 (MQ=60)
AAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG > SRR4302535.2014909/1‑94 (MQ=60)
AACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGC < SRR4302535.2591250/94‑1 (MQ=60)
AACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGC > SRR4302535.45553/1‑94 (MQ=60)
ACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCG < SRR4302535.2016812/94‑1 (MQ=60)
ACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCG < SRR4302535.1530185/94‑1 (MQ=60)
CCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGG > SRR4302535.1158186/1‑94 (MQ=60)
CAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGC > SRR4302535.4597657/1‑94 (MQ=60)
CATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCA > SRR4302535.789708/1‑94 (MQ=60)
ATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACA > SRR4302535.1035739/1‑94 (MQ=60)
TAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACA > SRR4302535.2755681/1‑94 (MQ=60)
AACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAG < SRR4302535.3688286/94‑1 (MQ=60)
CCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCC > SRR4302535.656456/1‑94 (MQ=60)
CAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCATAGCCG > SRR4302535.4319092/1‑94 (MQ=60)
CAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCG > SRR4302535.1004278/1‑94 (MQ=60)
AATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGA > SRR4302535.1939751/1‑94 (MQ=60)
AATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGA > SRR4302535.4605890/1‑94 (MQ=60)
ATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGA > SRR4302535.3060925/1‑94 (MQ=60)
TGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGT < SRR4302535.4644457/94‑1 (MQ=60)
TGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTC > SRR4302535.203595/1‑94 (MQ=60)
GCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCG < SRR4302535.1755157/94‑1 (MQ=60)
GCGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCG < SRR4302535.2675229/94‑1 (MQ=60)
CGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGT > SRR4302535.1145272/1‑94 (MQ=60)
CGTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGT > SRR4302535.4192140/1‑94 (MQ=60)
GTACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTC < SRR4302535.2758373/94‑1 (MQ=60)
TACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCG > SRR4302535.2307514/1‑94 (MQ=60)
TACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCG > SRR4302535.743843/1‑94 (MQ=60)
TACAGGAATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCG > SRR4302535.3295057/1‑94 (MQ=60)
TACAGGAACCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCG < SRR4302535.3670022/94‑1 (MQ=60)
AGGAATCCGTTCGGGAACAACAG‑‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAC < SRR4302535.3413288/94‑1 (MQ=60)
AATCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCA > SRR4302535.3986029/1‑94 (MQ=60)
AAGCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCA < SRR4302535.876119/94‑1 (MQ=60)
TCCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAA < SRR4302535.1401554/94‑1 (MQ=60)
CCGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAAC < SRR4302535.728542/94‑1 (MQ=60)
CGTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACA > SRR4302535.292347/1‑94 (MQ=60)
GTTCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAG < SRR4302535.424051/94‑1 (MQ=60)
TCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGAT < SRR4302535.4487861/94‑1 (MQ=60)
TCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGAT < SRR4302535.37084/94‑1 (MQ=60)
TCGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGAT < SRR4302535.2972333/94‑1 (MQ=60)
CGGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATC < SRR4302535.3721882/94‑1 (MQ=60)
CGGGAACAACAG‑‑‑C‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTG < SRR4302535.4516607/94‑1 (MQ=60)
GGGAACAACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCT < SRR4302535.3718732/94‑1 (MQ=60)
AACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCCGA > SRR4302535.1102018/1‑94 (MQ=60)
AACAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGA < SRR4302535.663691/94‑1 (MQ=60)
CAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATA < SRR4302535.2125918/94‑1 (MQ=60)
CAGC‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATA > SRR4302535.2451243/1‑94 (MQ=60)
agcCC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAG < SRR4302535.759507/91‑1 (MQ=60)
agcCC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAG < SRR4302535.4027430/91‑1 (MQ=60)
agcCC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAACAAACAGATCTGCCAGATAG > SRR4302535.3902220/4‑94 (MQ=60)
C‑‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTC < SRR4302535.113646/94‑1 (MQ=60)
C‑‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTA > SRR4302535.3717868/1‑94 (MQ=60)
gcCC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGT < SRR4302535.3310994/92‑1 (MQ=60)
gcCC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGACGAAACCAAACAGATCTGCCAGATAGT < SRR4302535.849445/92‑1 (MQ=60)
CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCA > SRR4302535.2919915/1‑94 (MQ=60)
C‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAA > SRR4302535.4623024/1‑94 (MQ=60)
C‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAA > SRR4302535.4524010/1‑94 (MQ=60)
CCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAAC < SRR4302535.1435684/94‑1 (MQ=60)
CCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACA > SRR4302535.850936/1‑94 (MQ=60)
CCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAA < SRR4302535.1953998/94‑1 (MQ=60)
CACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAA < SRR4302535.619210/94‑1 (MQ=60)
CACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAA > SRR4302535.1108837/1‑94 (MQ=60)
CACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAA > SRR4302535.3666466/1‑94 (MQ=60)
CACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAA > SRR4302535.4283103/1‑94 (MQ=60)
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AACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CC‑CCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAA > NC_000913/3302362‑3302547
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
