Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 3,349,263 (CCGGTG)1→2 coding (1398/2331 nt) arcB ← aerobic respiration sensor‑response protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 33492571 (0.010)205 (1.200)
+CCGGTG		 105/160 0.1 99.5% coding (1404/2331 nt) arcB aerobic respiration sensor‑response protein
?NC_000913 3349258 = 1 (0.010)coding (1403/2331 nt) arcB aerobic respiration sensor‑response protein

Only 100 of 227 total aligned reads displayed.

CGTAAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3349167‑3349257
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGA  >  NC_000913/3349258‑3349349
                                                                                           ||||||                                                                                            
 GTAAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCCATACCG                                                                                                 >  2:1432751/1‑93
  TAAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCGATACCGG                                                                                                >  2:2313369/1‑93
    AAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTG                                                                                              >  2:979621/1‑93
     AGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGC                                                                                             <  2:1695819/93‑1
      GGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCC                                                                                            <  2:4278165/93‑1
      GGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCC                                                                                            >  1:278959/1‑93
      GGTTGAACCTTTGCCCTGTTCGAAGGTAACCATAATCACGACACCCAAAATTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCC                                                                                            <  2:4682353/93‑1
       GTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCG                                                                                           >  1:372764/1‑93
       GTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCG                                                                                           >  1:2981330/1‑93
        TTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGG                                                                                          >  1:2923235/1‑93
          GAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTG                                                                                        >  1:3779172/1‑93
          GAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTG                                                                                        <  2:1906089/93‑1
            ACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGC                                                                                      >  1:1001396/1‑93
            ACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGC                                                                                      >  1:2328514/1‑93
             CCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCA                                                                                     <  2:3575641/93‑1
             CCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCA                                                                                     >  2:1137247/1‑93
               TTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGG                                                                                   >  2:3168968/1‑93
                 TGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTT                                                                                 <  2:2179415/93‑1
                  GCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTT                                                                                >  1:1218100/1‑93
                    CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTAC                                                                              >  2:241460/1‑93
                    CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTAC                                                                              <  1:35262/93‑1
                    CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTAC                                                                              <  1:4319431/93‑1
                    CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTAC                                                                              <  2:2596652/93‑1
                    CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTAC                                                                              <  2:3233569/93‑1
                    CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTAC                                                                              >  2:3074007/1‑93
                     CTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACC                                                                             >  2:4244386/1‑93
                     CTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACC                                                                             >  2:3770906/1‑93
                     CTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGGTTACC                                                                             >  2:3803395/1‑93
                      TGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCG                                                                            >  2:4107254/1‑93
                        TTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCC                                                                          >  1:4496475/1‑93
                         TCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCA                                                                         <  2:4477624/93‑1
                            CTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGA                                                                      <  1:1375421/93‑1
                            CTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGA                                                                      <  2:1809130/93‑1
                            CTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGA                                                                      <  1:2190194/93‑1
                             TGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGAC                                                                     >  2:2221958/1‑93
                             TGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGAC                                                                     >  1:2833390/1‑93
                             TGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGAC                                                                     <  1:1735713/93‑1
                                TAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGT                                                                  >  2:2713559/1‑93
                                TAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGT                                                                  >  2:4201597/1‑93
                                 AACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTC                                                                 <  2:972125/93‑1
                                  ACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCT                                                                <  2:3596669/93‑1
                                  ACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCT                                                                >  2:4366183/1‑93
                                   CCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTT                                                               >  2:4186381/1‑93
                                   CCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTT                                                               >  1:1588988/1‑93
                                    CGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTT                                                              >  1:1887101/1‑93
                                     GTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTCCCGGTGGCCGGTTTACCGCCACGACTGTCTTTt                                                             >  2:1771835/1‑92
                                        ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACC                                                          <  1:1090674/93‑1
                                        ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACC                                                          >  1:837724/1‑93
                                        ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACC                                                          <  1:1308614/93‑1
                                        ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACC                                                          >  1:1466953/1‑93
                                          ATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTG                                                        <  1:3077065/93‑1
                                           TCGCCGCCCATATTTTTCGCCGGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGG                                                       <  2:2483651/93‑1
                                           TCGCCGCCCATATTTTTCGCCAGACTACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGG                                                       <  2:833896/93‑1
                                            CGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGATTACCGCCATGACTGTCTTTCACCTGGT                                                      >  1:3818451/1‑93
                                             GCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTA                                                     >  1:2181710/1‑93
                                              CCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAA                                                    <  2:662670/93‑1
                                              CCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAA                                                    <  1:3856621/93‑1
                                               CGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAAT                                                   <  2:2805202/93‑1
                                                  CCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACA                                                <  1:3395094/93‑1
                                                  CCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACA                                                >  1:1796159/1‑93
                                                  CCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACA                                                >  2:2024015/1‑93
                                                  CCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACA                                                <  1:3613560/93‑1
                                                   CATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAT                                               >  1:4661300/1‑93
                                                    ATATTATTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATG                                              <  2:1361266/93‑1
                                                     TATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG                                             >  1:2585364/1‑93
                                                     TATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG                                             >  1:2988623/1‑93
                                                     TATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG                                             <  2:4442433/93‑1
                                                       TTTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCG                                           <  2:3305846/93‑1
                                                        TTTTCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGA                                          >  2:3447398/1‑93
                                                           TCGCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA                                       <  2:476567/93‑1
                                                             GCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATT                                     >  1:2163684/1‑93
                                                             GCCAGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATT                                     >  1:1672698/1‑93
                                                                AGACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTA                                  >  1:1126101/1‑93
                                                                 GACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTAT                                 >  2:1573094/1‑93
                                                                  ACGACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATC                                <  2:2661790/93‑1
                                                                    GACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCA                              >  1:2431048/1‑93
                                                                     ACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAG                             >  2:2739184/1‑93
                                                                     ACGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAG                             >  1:59785/1‑93
                                                                      CGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGC                            >  2:2089255/1‑93
                                                                         GAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGACTTTCACCTGGCAATACATGGCGAAAATTTTATCCAGCTga                         >  1:708396/1‑91
                                                                          AAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCAT                        <  2:1406755/93‑1
                                                                           AACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATC                       >  1:1649856/1‑93
                                                                            ACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCCGCTCATCC                      <  2:4551293/93‑1
                                                                            ACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCC                      <  1:501397/93‑1
                                                                              GGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTG                    <  1:148509/93‑1
                                                                               GCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGC                   >  2:3031184/1‑93
                                                                               GCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGC                   <  2:3965384/93‑1
                                                                                CCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCG                  >  1:3952000/1‑93
                                                                                   GACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAA               <  1:3324826/93‑1
                                                                                     CCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATG             >  1:1953088/1‑93
                                                                                       AATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCC           >  2:1489949/1‑93
                                                                                       AATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCC           >  1:63355/1‑93
                                                                                         TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGA         <  1:3121794/93‑1
                                                                                           CCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATA       <  1:2075698/93‑1
                                                                                           CCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATA       <  2:1232545/93‑1
                                                                                            CGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATAC      >  2:582074/1‑93
                                                                                             GGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACC     >  2:4016961/1‑93
                                                                                              GTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCA    <  1:4183006/93‑1
                                                                                              GTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCA    >  1:2502668/1‑93
                                                                                              GTGCCGGTGGCAGGTTGACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCA    <  1:4584228/93‑1
                                                                                           ||||||                                                                                            
CGTAAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3349167‑3349257
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGA  >  NC_000913/3349258‑3349349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCC  >  NC_000913/3349170‑3349356
                                                                                                         |                                                                                             
AAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTG                                                                                               <  SRR4302535.525822/94‑1 (MQ=60)
  AGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGCC                                                                                             >  SRR4302535.280902/1‑94 (MQ=60)
   GGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccg                                                                                            >  SRR4302535.3002244/1‑91 (MQ=60)
   GGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccg                                                                                            >  SRR4302535.375342/1‑91 (MQ=60)
   GGTTGAACCTGTGCCCTGTTCGCTGGTAGCCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccg                                                                                            <  SRR4302535.2998036/94‑4 (MQ=60)
    GTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccgg                                                                                           >  SRR4302535.2943849/1‑90 (MQ=60)
      TGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtg                                                                                         >  SRR4302535.4557029/1‑88 (MQ=60)
      TGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtg                                                                                         <  SRR4302535.1674350/94‑7 (MQ=60)
      TGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtg                                                                                         >  SRR4302535.3805253/1‑88 (MQ=60)
       GAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtgg                                                                                        >  SRR4302535.240791/1‑87 (MQ=60)
        AACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggc                                                                                       >  SRR4302535.1008511/1‑86 (MQ=60)
        AACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggc                                                                                       >  SRR4302535.2345169/1‑86 (MQ=60)
           CTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggcagg                                                                                    <  SRR4302535.628359/94‑12 (MQ=60)
              TGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTT                                                                                       >  SRR4302535.1226839/1‑94 (MQ=60)
               GCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTA                                                                                      <  SRR4302535.3533316/94‑1 (MQ=60)
                 CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACC                                                                                    <  SRR4302535.4348980/94‑1 (MQ=60)
                 CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACC                                                                                    <  SRR4302535.35535/94‑1 (MQ=60)
                 CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACC                                                                                    <  SRR4302535.1291552/94‑1 (MQ=60)
                   TGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGC                                                                                  >  SRR4302535.4458991/1‑94 (MQ=60)
                   TGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGC                                                                                  >  SRR4302535.2465534/1‑94 (MQ=60)
                    GTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCC                                                                                 >  SRR4302535.3410509/1‑94 (MQ=60)
                    GTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCC                                                                                 <  SRR4302535.4700655/94‑1 (MQ=60)
                    GTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCC                                                                                 >  SRR4302535.4527343/1‑94 (MQ=60)
                      TCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCAT                                                                               >  SRR4302535.2618598/1‑94 (MQ=60)
                         CTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGAC                                                                            >  SRR4302535.2853502/1‑94 (MQ=60)
                         CTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGAC                                                                            <  SRR4302535.2205786/94‑1 (MQ=60)
                         CTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGAC                                                                            >  SRR4302535.584698/1‑94 (MQ=60)
                         CTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGAC                                                                            >  SRR4302535.1797045/1‑94 (MQ=60)
                         CTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGAC                                                                            <  SRR4302535.1385247/94‑1 (MQ=60)
                          TGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACT                                                                           <  SRR4302535.1748259/94‑1 (MQ=60)
                          TGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACT                                                                           <  SRR4302535.3344505/94‑1 (MQ=60)
                           GGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTG                                                                          <  SRR4302535.2864768/94‑1 (MQ=60)
                              AACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCT                                                                       <  SRR4302535.1056876/94‑1 (MQ=60)
                              AACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCT                                                                       >  SRR4302535.1652991/1‑94 (MQ=60)
                               ACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTT                                                                      >  SRR4302535.1600456/1‑94 (MQ=60)
                                CCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTT                                                                     >  SRR4302535.1900695/1‑94 (MQ=60)
                                  GTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCA                                                                   >  SRR4302535.1514692/1‑94 (MQ=60)
                                  GTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCA                                                                   >  SRR4302535.3641099/1‑94 (MQ=60)
                                    AATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACC                                                                 >  SRR4302535.1477461/1‑94 (MQ=60)
                                    AATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACC                                                                 >  SRR4302535.843605/1‑94 (MQ=60)
                                     ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCT                                                                <  SRR4302535.1098446/94‑1 (MQ=60)
                                     ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCT                                                                <  SRR4302535.1317965/94‑1 (MQ=60)
                                      TATCGCCGCCCATATTTTTCGTCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTG                                                               <  SRR4302535.1706201/94‑1 (MQ=60)
                                      TATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTG                                                               >  SRR4302535.1952398/1‑94 (MQ=60)
                                       ATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATGCCGGTG‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGG                                                              <  SRR4302535.1297332/94‑1 (MQ=60)
                                       ATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGG                                                              <  SRR4302535.3098529/94‑1 (MQ=60)
                                        TCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGT                                                             >  SRR4302535.2203144/1‑94 (MQ=60)
                                        TCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGT                                                             <  SRR4302535.2596940/94‑1 (MQ=60)
                                        TCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGATTACCGCCATGACTGTCTTTCACCTGGT                                                             >  SRR4302535.3844800/1‑94 (MQ=60)
                                         CGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTA                                                            >  SRR4302535.3111165/1‑94 (MQ=60)
                                         CGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTA                                                            >  SRR4302535.2197271/1‑94 (MQ=60)
                                           CCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAAT                                                          <  SRR4302535.3883173/94‑1 (MQ=60)
                                              CCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACA                                                       >  SRR4302535.1809144/1‑94 (MQ=60)
                                              CCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACA                                                       >  SRR4302535.4245745/1‑94 (MQ=60)
                                               CCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAT                                                      <  SRR4302535.3638614/94‑1 (MQ=60)
                                               CCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAT                                                      <  SRR4302535.3418716/94‑1 (MQ=60)
                                               CCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAT                                                      >  SRR4302535.2137173/1‑94 (MQ=60)
                                               CCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAT                                                      >  SRR4302535.4692826/1‑94 (MQ=60)
                                               CCATATGTTTCGCCAGACGACGAGAACCGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAT                                                      <  SRR4302535.1982049/94‑1 (MQ=60)
                                                CATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATG                                                     >  SRR4302535.3933789/1‑94 (MQ=60)
                                                 ATTTTTTTCCGCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG                                                    <  SRR4302535.875672/94‑1 (MQ=60)
                                                 ATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG                                                    >  SRR4302535.2955059/1‑94 (MQ=60)
                                                 ATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG                                                    <  SRR4302535.2301306/94‑1 (MQ=60)
                                                 ATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG                                                    >  SRR4302535.3007712/1‑94 (MQ=60)
                                                 ATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG                                                    >  SRR4302535.3009577/1‑94 (MQ=60)
                                                 ATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG                                                    >  SRR4302535.2603930/1‑94 (MQ=60)
                                                   ATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCG                                                  <  SRR4302535.3858501/94‑1 (MQ=60)
                                                     TTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAA                                                <  SRR4302535.3676927/94‑1 (MQ=60)
                                                      TTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAA                                               <  SRR4302535.1128909/94‑1 (MQ=60)
                                                         CGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATT                                            >  SRR4302535.1684805/1‑94 (MQ=60)
                                                         CGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATT                                            >  SRR4302535.2179204/1‑94 (MQ=60)
                                                         CGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATT                                            >  SRR4302535.201558/1‑94 (MQ=60)
                                                           CCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTT                                          >  SRR4302535.902573/1‑94 (MQ=60)
                                                            CAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTT                                         >  SRR4302535.3963200/1‑94 (MQ=60)
                                                            CAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTA                                         >  SRR4302535.1134142/1‑94 (MQ=60)
                                                               ACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCC                                      <  SRR4302535.37937/94‑1 (MQ=60)
                                                                CGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCA                                     >  SRR4302535.2448561/1‑94 (MQ=60)
                                                                CGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCA                                     <  SRR4302535.1873010/94‑1 (MQ=60)
                                                                 GACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAG                                    >  SRR4302535.60229/1‑94 (MQ=60)
                                                                  ACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGC                                   <  SRR4302535.140170/94‑1 (MQ=60)
                                                                   CGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCT                                  <  SRR4302535.4055725/94‑1 (MQ=60)
                                                                     AGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCA                                >  SRR4302535.3832221/1‑94 (MQ=60)
                                                                     AGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGACTTTCACCTGGCAATACATGGCGAAAATTTTATCCAGCTGA                                >  SRR4302535.713368/1‑94 (MQ=60)
                                                                      GAAACGTCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCAT                               <  SRR4302535.1332248/94‑1 (MQ=60)
                                                                       AAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATC                              >  SRR4302535.1661786/1‑94 (MQ=60)
                                                                         ACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCT                            <  SRR4302535.3255633/94‑1 (MQ=60)
                                                                         ACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCT                            <  SRR4302535.504907/94‑1 (MQ=60)
                                                                         ACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCT                            <  SRR4302535.159474/94‑1 (MQ=60)
                                                                         ACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCT                            <  SRR4302535.2799941/94‑1 (MQ=60)
                                                                           GGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGC                          <  SRR4302535.149545/94‑1 (MQ=60)
                                                                            GCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCG                         >  SRR4302535.2332825/1‑94 (MQ=60)
                                                                            GCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCG                         >  SRR4302535.3978982/1‑94 (MQ=60)
                                                                               AGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAA                      >  SRR4302535.4676466/1‑94 (MQ=60)
                                                                                GACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAAT                     <  SRR4302535.3347963/94‑1 (MQ=60)
                                                                                       accaataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATG                    >  SRR4302535.1967146/14‑94 (MQ=60)
                                                                                       accaataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATG                    <  SRR4302535.1801314/81‑1 (MQ=60)
                                                                                        ccaataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGC                   <  SRR4302535.3564219/82‑1 (MQ=60)
                                                                                         caataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCC                  >  SRR4302535.63833/12‑94 (MQ=60)
                                                                                           ataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGA                >  SRR4302535.666280/10‑94 (MQ=60)
                                                                                            taccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGAT               <  SRR4302535.3143533/86‑1 (MQ=60)
                                                                                            taccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGAT               <  SRR4302535.2184080/86‑1 (MQ=60)
                                                                                             G‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTACACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAG        <  SRR4302535.2814888/94‑1 (MQ=60)
                                                                                              ccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATAC             <  SRR4302535.2090650/88‑1 (MQ=60)
                                                                                               cggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACC            <  SRR4302535.1495125/89‑1 (MQ=60)
                                                                                                ggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCA           >  SRR4302535.2520714/5‑94 (MQ=60)
                                                                                                 gtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAG          <  SRR4302535.4211627/91‑1 (MQ=60)
                                                                                                 gtgCCGGTGGCAGGTTGACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAG          <  SRR4302535.4615446/91‑1 (MQ=60)
                                                                                                      GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCT     <  SRR4302535.3155593/94‑1 (MQ=60)
                                                                                                      GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCT     >  SRR4302535.922597/1‑94 (MQ=60)
                                                                                                       GTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTT    >  SRR4302535.391660/1‑94 (MQ=60)
                                                                                                       GTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTT    >  SRR4302535.3892796/1‑94 (MQ=60)
                                                                                                       GTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTT    <  SRR4302535.1818496/94‑1 (MQ=60)
                                                                                                         GGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCC  >  SRR4302535.128933/1‑94 (MQ=60)
                                                                                                         GGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCC  <  SRR4302535.4392392/94‑1 (MQ=60)
                                                                                                         GGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCC  >  SRR4302535.4188650/1‑94 (MQ=60)
                                                                                                         GGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCC  <  SRR4302535.1367476/94‑1 (MQ=60)
                                                                                                         GGCAGGTTTACCGCCATGACTGTCTTTCACCTGGCAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCC  >  SRR4302535.1365974/1‑94 (MQ=60)
                                                                                                         GGCAGGTTTACCGCCATGACTGNCTTTCACCTGGTNANACATGGCGAAAATNTTNTCCAGCNCNTCCTGNNGNNNGCCGANANNANANNNNNCC  >  SRR4302535.298791/1‑94 (MQ=60)
                                                                                                         |                                                                                             
AAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCC  >  NC_000913/3349170‑3349356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑