Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,351,337	T→C	T117A (ACC→GCC)	yhcC ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,351,337	0	T	C	100.0%	624.0 / NA	202	T117A (ACC→GCC)	yhcC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (102/100); total (102/100)

Only 100 of 213 total aligned reads displayed.

GTAGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGTACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTAT  >  NC_000913/3351247‑3351426

gTAGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCAc                                                                                         <  1:1468301/93‑1 (MQ=255)

 tAGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCAcc                                                                                        <  2:3676468/93‑1 (MQ=255)

  aGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCAccc                                                                                       <  1:4311382/93‑1 (MQ=255)

  aGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCAccc                                                                                       >  1:2734241/1‑93 (MQ=255)

   gCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCca                                                                                      >  2:4599750/1‑93 (MQ=255)

   gCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCca                                                                                      >  1:4466388/1‑93 (MQ=255)

     cccAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCcaca                                                                                    >  2:1438615/1‑93 (MQ=255)

      ccAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCcacac                                                                                   <  2:3167090/93‑1 (MQ=255)

      ccAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCcacac                                                                                   >  1:2322553/1‑93 (MQ=255)

        aGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCcacacac                                                                                 <  2:3040946/93‑1 (MQ=255)

           tCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACaaa                                                                              >  1:3437855/1‑93 (MQ=255)

            ccAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAAc                                                                             >  1:1714057/1‑93 (MQ=255)

            ccAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAAc                                                                             <  2:709700/93‑1 (MQ=255)

              aGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCg                                                                           <  2:387196/93‑1 (MQ=255)

              aGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCg                                                                           >  2:2095912/1‑93 (MQ=255)

               gCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGa                                                                          <  1:3368081/93‑1 (MQ=255)

                 cacaCTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACa                                                                        >  2:3077090/1‑93 (MQ=255)

                  ccacTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACaa                                                                       <  2:271531/92‑1 (MQ=255)

                  acacTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACaa                                                                       <  2:3277098/93‑1 (MQ=255)

                  acacTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACaa                                                                       <  1:3551797/93‑1 (MQ=255)

                   cacTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAat                                                                      <  1:160594/93‑1 (MQ=255)

                    ccTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAata                                                                     <  2:3487917/92‑1 (MQ=255)

                    acTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAata                                                                     >  1:683850/1‑93 (MQ=255)

                    acTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAata                                                                     <  2:2444537/93‑1 (MQ=255)

                    acTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCCACAata                                                                     <  2:3901811/93‑1 (MQ=255)

                     cTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAatat                                                                    <  2:2511314/93‑1 (MQ=255)

                     cTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAatat                                                                    <  1:307796/93‑1 (MQ=255)

                      ttCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATAtt                                                                   <  1:304918/93‑1 (MQ=255)

                       tCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTg                                                                  <  2:2744715/93‑1 (MQ=255)

                         gTAACCCTGGTCCTTATATCCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGc                                                                <  2:3314647/93‑1 (MQ=255)

                          tAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGcc                                                               <  1:3993311/93‑1 (MQ=255)

                          tAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGcc                                                               >  1:99132/1‑93 (MQ=255)

                          tAACACTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGcc                                                               <  1:2431118/93‑1 (MQ=255)

                           aaCCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCt                                                              >  1:1206975/1‑93 (MQ=255)

                            aCCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCTACAATATTGGCCTg                                                             <  2:833452/93‑1 (MQ=255)

                             cccTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGGCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTgg                                                            <  2:2991175/93‑1 (MQ=255)

                              ccTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGc                                                           <  1:1359082/93‑1 (MQ=255)

                               cTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCt                                                          >  1:1513321/1‑93 (MQ=255)

                               cTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCt                                                          >  2:142070/1‑93 (MQ=255)

                                tGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTc                                                         <  2:2619518/93‑1 (MQ=255)

                                tGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTc                                                         >  1:3757725/1‑93 (MQ=255)

                                  gTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCAc                                                       >  1:1955130/1‑93 (MQ=255)

                                   tCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCAcc                                                      <  2:2914685/93‑1 (MQ=255)

                                   tCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCAcc                                                      >  2:1132247/1‑93 (MQ=255)

                                   tCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCAcc                                                      <  2:1096545/93‑1 (MQ=255)

                                    ccTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCg                                                     >  1:930103/1‑93 (MQ=255)

                                     cTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCTACAATATTGGCCTGGCTCACGGc                                                    >  2:1190850/1‑93 (MQ=255)

                                     cTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGc                                                    >  1:4098256/1‑93 (MQ=255)

                                     cTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGc                                                    >  1:602827/1‑93 (MQ=255)

                                     cTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCAGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGc                                                    >  2:76978/1‑93 (MQ=255)

                                      ttATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGcc                                                   >  1:1162973/1‑93 (MQ=255)

                                       tataTTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCct                                                  <  2:2353460/93‑1 (MQ=255)

                                          atTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCctgct                                               <  2:1863660/93‑1 (MQ=255)

                                           ttCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCctgctg                                              >  1:1854064/1‑93 (MQ=255)

                                             cGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGAt                                            <  2:1320051/93‑1 (MQ=255)

                                              gCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATa                                           >  2:1057764/1‑93 (MQ=255)

                                              gCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATa                                           >  2:3759221/1‑93 (MQ=255)

                                              gCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATa                                           >  1:3541577/1‑93 (MQ=255)

                                                aaaGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACa                                         <  2:3850547/93‑1 (MQ=255)

                                                aaaGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACa                                         >  2:2537334/1‑93 (MQ=255)

                                                  aGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATa                                       <  1:2024925/93‑1 (MQ=255)

                                                  aGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATa                                       <  2:1358432/93‑1 (MQ=255)

                                                     aGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGaa                                    <  1:3759484/93‑1 (MQ=255)

                                                      gATCCAGCACCGCATCGGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCCCCGCCTGCTGATACATAGAAc                                   <  1:4486760/93‑1 (MQ=255)

                                                      gATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAAc                                   >  1:381567/1‑93 (MQ=255)

                                                      gATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAAc                                   <  1:2929740/93‑1 (MQ=255)

                                                      gATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAAc                                   <  2:2379384/93‑1 (MQ=255)

                                                       aTCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACg                                  >  1:3928219/1‑93 (MQ=255)

                                                       aTCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACg                                  >  1:4577786/1‑93 (MQ=255)

                                                       aTCCAGCACCACATCCAGCATGCAGTCCGGCCGGCCACCCACACACAAACCGACAATATTGACCTGGCTCGCCGCCTGCTGATACATAGAACg                                  <  2:4206470/93‑1 (MQ=255)

                                                           cgccccGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACgcagc                              <  1:3237353/89‑1 (MQ=255)

                                                           aGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACgcagc                              >  2:1527772/1‑93 (MQ=255)

                                                            gCACCGCATCGGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACgcagca                             <  2:4367590/93‑1 (MQ=255)

                                                              ccggCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCGCCGCCTGCTTATACATAGAACGCAGCAcc                           <  1:3391785/90‑1 (MQ=255)

                                                              aCCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCAcc                           >  1:3281510/1‑93 (MQ=255)

                                                              aCCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCAcc                           <  2:1730989/93‑1 (MQ=255)

                                                               ccGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCt                          <  2:3610587/93‑1 (MQ=255)

                                                                cGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTg                         >  2:3966146/1‑93 (MQ=255)

                                                                 gCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGa                        >  2:4095757/1‑93 (MQ=255)

                                                                  cATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGaa                       >  1:2595624/1‑93 (MQ=255)

                                                                   aTCCGGCACGCAGTCCGGGCGGGCACCCACGCACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAAc                      <  1:2214888/93‑1 (MQ=255)

                                                                    tCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACt                     >  2:2249612/1‑93 (MQ=255)

                                                                      cGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTc                   <  2:1079720/93‑1 (MQ=255)

                                                                       ggCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTcc                  >  2:4302222/1‑93 (MQ=255)

                                                                          aCGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACCTAGAACCCCACAGCTGAACTTCCGCa               >  2:2572939/1‑93 (MQ=255)

                                                                          aCGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCa               >  2:4443229/1‑93 (MQ=255)

                                                                           cGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCaa              >  1:1297249/1‑93 (MQ=255)

                                                                            gCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCaaa             >  2:3815370/1‑93 (MQ=255)

                                                                            gCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCaaa             <  1:3199031/93‑1 (MQ=255)

                                                                             gaGTCCGGGCGGTTACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAg            <  2:570674/92‑1 (MQ=255)

                                                                             cAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAg            <  1:872971/93‑1 (MQ=255)

                                                                               gTCCGGGCGGGCACCCACACACAAACCGACACTATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCCAAgca          >  2:1641840/1‑91 (MQ=255)

                                                                               gTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAggg          >  1:372302/1‑92 (MQ=255)

                                                                               gTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAggg          >  1:3765152/1‑92 (MQ=255)

                                                                               gTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGt          >  2:736939/1‑93 (MQ=255)

                                                                               gTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGAAAAggg          >  2:361216/1‑92 (MQ=255)

                                                                                   gggcgggcACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTg      >  1:3603333/1‑93 (MQ=255)

                                                                                      cgggCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGta   <  1:2010933/93‑1 (MQ=255)

                                                                                      cgggCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGta   <  1:4421344/93‑1 (MQ=255)

                                                                                      cgggCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGta   <  1:2793252/93‑1 (MQ=255)

GTAGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGTACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTAT  >  NC_000913/3351247‑3351426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTGTAGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGTACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTATACGC  >  NC_000913/3351244‑3351430

TTTGTAGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGC                                                                                               <  SRR4302535.4323650/94‑1 (MQ=60)

 TTGTAGCCCCACCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCA                                                                                              <  SRR4302535.4050571/94‑1 (MQ=60)

 TCGTAGCCCCATCACCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCCCCGCATCCGGCACGCAGTCCGGGCGGGCA                                                                                              <  SRR4302535.1693520/94‑1 (MQ=60)

  TGTAGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCAC                                                                                             <  SRR4302535.3055354/94‑1 (MQ=60)

   GTAGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACC                                                                                            <  SRR4302535.1478820/94‑1 (MQ=60)

    TAGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCC                                                                                           >  SRR4302535.2753752/1‑94 (MQ=60)

     AGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCA                                                                                          >  SRR4302535.4497028/1‑94 (MQ=60)

     AGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCA                                                                                          <  SRR4302535.4340875/94‑1 (MQ=60)

      GCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCAC                                                                                         >  SRR4302535.4090015/1‑94 (MQ=60)

        CCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACAC                                                                                       >  SRR4302535.2339175/1‑94 (MQ=60)

         CCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACA                                                                                      <  SRR4302535.1449520/94‑1 (MQ=60)

           AGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACA                                                                                    >  SRR4302535.2434382/1‑94 (MQ=60)

             CTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAA                                                                                  >  SRR4302535.3461767/1‑94 (MQ=60)

              TCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAAC                                                                                 >  SRR4302535.1307283/1‑94 (MQ=60)

              TCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAAC                                                                                 >  SRR4302535.1726452/1‑94 (MQ=60)

                CAGCCACCCTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCG                                                                               <  SRR4302535.3238481/94‑1 (MQ=60)

                 AGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGAGCACCCACACACAAACCGA                                                                              >  SRR4302535.3632118/1‑94 (MQ=60)

                  GCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGAC                                                                             <  SRR4302535.1540181/94‑1 (MQ=60)

                  GCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGAC                                                                             <  SRR4302535.3391517/94‑1 (MQ=60)

                    CACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAA                                                                           >  SRR4302535.4346024/1‑94 (MQ=60)

                     ACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAAT                                                                          <  SRR4302535.1689489/94‑1 (MQ=60)

                     ACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAAT                                                                          <  SRR4302535.3576445/94‑1 (MQ=60)

                     ACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAAT                                                                          >  SRR4302535.943017/1‑94 (MQ=60)

                      CACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATA                                                                         <  SRR4302535.161721/94‑1 (MQ=60)

                      CACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATA                                                                         >  SRR4302535.688635/1‑94 (MQ=60)

                       ACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATAT                                                                        >  SRR4302535.3403282/1‑94 (MQ=60)

                        CTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATT                                                                       <  SRR4302535.309927/94‑1 (MQ=60)

                         TTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTG                                                                      <  SRR4302535.307033/94‑1 (MQ=60)

                          TCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGG                                                                     <  SRR4302535.3626715/94‑1 (MQ=60)

                          TCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGG                                                                     <  SRR4302535.4504683/94‑1 (MQ=60)

                            GTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCC                                                                   >  SRR4302535.99831/1‑94 (MQ=60)

                             TAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCT                                                                  >  SRR4302535.3390304/1‑94 (MQ=60)

                             TAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCT                                                                  >  SRR4302535.1215649/1‑94 (MQ=60)

                             TAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCT                                                                  <  SRR4302535.4495677/94‑1 (MQ=60)

                             TAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCT                                                                  <  SRR4302535.4020628/94‑1 (MQ=60)

                             TAACACTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCT                                                                  <  SRR4302535.2448632/94‑1 (MQ=60)

                              AACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTG                                                                 <  SRR4302535.2705602/94‑1 (MQ=60)

                              AACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCAACAATATTGGCCTG                                                                 >  SRR4302535.1856111/1‑94 (MQ=60)

                               ACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGG                                                                >  SRR4302535.980999/1‑94 (MQ=60)

                                 CCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCT                                                              >  SRR4302535.1524224/1‑94 (MQ=60)

                                 CCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCT                                                              <  SRR4302535.1368800/94‑1 (MQ=60)

                                  CTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTTCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTC                                                             <  SRR4302535.3324548/94‑1 (MQ=60)

                                  CTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTC                                                             >  SRR4302535.3783709/1‑94 (MQ=60)

                                    GGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCAC                                                           >  SRR4302535.646856/1‑94 (MQ=60)

                                    GGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCAC                                                           <  SRR4302535.1942624/94‑1 (MQ=60)

                                    GGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCAC                                                           >  SRR4302535.1969203/1‑94 (MQ=60)

                                    GGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCAC                                                           >  SRR4302535.3168732/1‑94 (MQ=60)

                                     GTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACC                                                          <  SRR4302535.3759270/94‑1 (MQ=60)

                                     GTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACC                                                          >  SRR4302535.794310/1‑94 (MQ=60)

                                     GTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACC                                                          >  SRR4302535.2620570/1‑94 (MQ=60)

                                      TCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCG                                                         >  SRR4302535.936681/1‑94 (MQ=60)

                                       CCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGC                                                        >  SRR4302535.607046/1‑94 (MQ=60)

                                       CCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGC                                                        >  SRR4302535.4126311/1‑94 (MQ=60)

                                        CTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCC                                                       >  SRR4302535.1171283/1‑94 (MQ=60)

                                         TTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCT                                                      >  SRR4302535.378444/1‑94 (MQ=60)

                                           ATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGCCAATATTGGCCTGGCTCACCGCCGGC                                                    >  SRR4302535.3028149/1‑94 (MQ=60)

                                            TATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCT                                                   >  SRR4302535.2778031/1‑94 (MQ=60)

                                             ATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTG                                                  >  SRR4302535.1867419/1‑94 (MQ=60)

                                                CGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATA                                               >  SRR4302535.3566184/1‑94 (MQ=60)

                                                 GCAAAGCAGATCCAGCACCGCATCAGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATAC                                              <  SRR4302535.2042152/94‑1 (MQ=60)

                                                  CAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACA                                             >  SRR4302535.2883130/1‑94 (MQ=60)

                                                     AGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAG                                          <  SRR4302535.2039517/94‑1 (MQ=60)

                                                     AGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAG                                          <  SRR4302535.501237/94‑1 (MQ=60)

                                                        AGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAAC                                       >  SRR4302535.384206/1‑94 (MQ=60)

                                                        AGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAAC                                       <  SRR4302535.3785472/94‑1 (MQ=60)

                                                        AGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAAC                                       <  SRR4302535.3785471/94‑1 (MQ=60)

                                                         GATCCAGCACCGCATCGGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCCCCGCCTGCTGATACATAGAACG                                      <  SRR4302535.4517560/94‑1 (MQ=60)

                                                         GATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACG                                      >  SRR4302535.4331799/1‑94 (MQ=60)

                                                         GATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACG                                      >  SRR4302535.4608972/1‑94 (MQ=60)

                                                         GATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACG                                      <  SRR4302535.2950380/94‑1 (MQ=60)

                                                         GATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACG                                      >  SRR4302535.3955050/1‑94 (MQ=60)

                                                              cgccCCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCA                                 <  SRR4302535.3259827/90‑1 (MQ=60)

                                                               GCACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCAC                                <  SRR4302535.2553207/94‑1 (MQ=60)

                                                                CACCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACC                               >  SRR4302535.3304300/1‑94 (MQ=60)

                                                                 ccgGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCGCCGCCTGCTTATACATAGAACGCAGCACCT                              <  SRR4302535.3415383/91‑1 (MQ=60)

                                                                 CCCGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCT                              <  SRR4302535.3840094/94‑1 (MQ=60)

                                                                 ACCGCATCCCGCACGGAGTCCGGGCGGGCCCCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCT                              <  SRR4302535.1194024/94‑1 (MQ=60)

                                                                   CGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGA                            <  SRR4302535.3749986/94‑1 (MQ=60)

                                                                   CGCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGA                            >  SRR4302535.4387766/1‑94 (MQ=60)

                                                                    GCATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAA                           >  SRR4302535.2614269/1‑94 (MQ=60)

                                                                     CATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGCTACATAGAACCCAGCACCTGAAC                          >  SRR4302535.3404789/1‑94 (MQ=60)

                                                                     CATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAAC                          >  SRR4302535.881401/1‑94 (MQ=60)

                                                                     CATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAAC                          >  SRR4302535.2019547/1‑94 (MQ=60)

                                                                     CATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAAC                          <  SRR4302535.3968891/94‑1 (MQ=60)

                                                                      ATCCGGCACGCAGTCCGGGCGGGCACCCACGCACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACT                         <  SRR4302535.2230660/94‑1 (MQ=60)

                                                                      ATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACT                         <  SRR4302535.202569/94‑1 (MQ=60)

                                                                      ATCCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACT                         >  SRR4302535.3573508/1‑94 (MQ=60)

                                                                        CCGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTC                       >  SRR4302535.2325844/1‑94 (MQ=60)

                                                                         CGGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCC                      <  SRR4302535.3421830/94‑1 (MQ=60)

                                                                          GGCACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCG                     <  SRR4302535.3896097/94‑1 (MQ=60)

                                                                             ACGCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAA                  >  SRR4302535.1306503/1‑94 (MQ=60)

                                                                               GCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAG                >  SRR4302535.152246/1‑94 (MQ=60)

                                                                               GCAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAG                <  SRR4302535.3221172/94‑1 (MQ=60)

                                                                                CAGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGG               <  SRR4302535.879158/94‑1 (MQ=60)

                                                                                 AGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGT              >  SRR4302535.3091324/1‑94 (MQ=60)

                                                                                 AGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGG              >  SRR4302535.374879/1‑94 (MQ=60)

                                                                                 AGTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGG              >  SRR4302535.3791158/1‑94 (MQ=60)

                                                                                  GTCCGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGAACCTGAACTTCCGCAAAGGTG             >  SRR4302535.4582978/1‑94 (MQ=60)

                                                                                  GTCCGGGCGGGCACCCAAACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAAAAGGCACCACCTGAACTTCCCCAAAGcgc             >  SRR4302535.3561122/1‑91 (MQ=60)

                                                                                     CGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTG          >  SRR4302535.1252950/1‑94 (MQ=60)

                                                                                     CGGGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTG          >  SRR4302535.3628336/1‑94 (MQ=60)

                                                                                       GGCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGT        <  SRR4302535.3293757/94‑1 (MQ=60)

                                                                                        GCGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTA       <  SRR4302535.1858461/94‑1 (MQ=60)

                                                                                         CGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTAT      <  SRR4302535.2025409/94‑1 (MQ=60)

                                                                                         CGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTAT      <  SRR4302535.4451621/94‑1 (MQ=60)

                                                                                         CGGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTAT      <  SRR4302535.2813129/94‑1 (MQ=60)

                                                                                          GGGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTATA     >  SRR4302535.4631778/1‑94 (MQ=60)

                                                                                           GGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTATAC    <  SRR4302535.1448897/94‑1 (MQ=60)

                                                                                           GGCACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTATAC    <  SRR4302535.3923561/94‑1 (MQ=60)

                                                                                             CACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTATAGGC  >  SRR4302535.1464413/1‑94 (MQ=60)

TTTGTAGCCCCAGCTCCAGCCACACTTCGTAACCCTGGTCCTTATATTCGCAAAGCAGATCCAGCACCGCATCCGGCACGCAGTCCGGGCGGGTACCCACACACAAACCGACAATATTGGCCTGGCTCACCGCCTGCTGATACATAGAACGCAGCACCTGAACTTCCGCAAAGGTGCTGGTATACGC  >  NC_000913/3351244‑3351430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`