Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,383,404	A→G	T95A (ACC→GCC)	yhcN →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,383,404	0	A	G	100.0%	784.8 / NA	249	T95A (ACC→GCC)	yhcN	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (119/130); total (119/130)

Only 100 of 254 total aligned reads displayed.

TCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAACGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACACCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCT  >  NC_000913/3383314‑3383493

 cGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCt                                                                                        <  1:2744034/93‑1 (MQ=255)

  gCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTg                                                                                       <  1:1069312/93‑1 (MQ=255)

  gCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTg                                                                                       >  2:3681601/1‑93 (MQ=255)

    cAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGc                                                                                     <  1:3923399/93‑1 (MQ=255)

    cAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGc                                                                                     >  1:4411838/1‑93 (MQ=255)

     aaTGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCa                                                                                    <  1:1546080/93‑1 (MQ=255)

      aTGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCAc                                                                                   <  1:4246151/93‑1 (MQ=255)

       tGGATATGCGTGAAATGCTTAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACg                                                                                  >  2:410851/1‑93 (MQ=255)

         gATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCt                                                                                >  1:3243576/1‑93 (MQ=255)

         gATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCt                                                                                <  1:540515/93‑1 (MQ=255)

          atatGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTa                                                                               <  1:2656950/93‑1 (MQ=255)

          atatGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTa                                                                               <  2:1782683/93‑1 (MQ=255)

          atatGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTa                                                                               >  2:1865863/1‑93 (MQ=255)

           tatGCGTGAAATGCTGAACAAAAAATCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTAc                                                                              <  2:1478163/93‑1 (MQ=255)

           tatGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCGTGGCACGCTAc                                                                              >  1:4163994/1‑93 (MQ=255)

           tatGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTAc                                                                              <  2:3627443/93‑1 (MQ=255)

           tatGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTAc                                                                              >  1:904953/1‑93 (MQ=255)

            atGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACg                                                                             >  2:718636/1‑93 (MQ=255)

            atGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACg                                                                             >  2:2995668/1‑93 (MQ=255)

             tGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACgg                                                                            >  1:3618521/1‑93 (MQ=255)

               cGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCt                                                                          <  1:4015248/93‑1 (MQ=255)

                gTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTg                                                                         >  2:616930/1‑93 (MQ=255)

                 tGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGa                                                                        >  2:4567465/1‑93 (MQ=255)

                  gAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGaa                                                                       <  1:658993/93‑1 (MQ=255)

                  gAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGaa                                                                       >  1:1481863/1‑93 (MQ=255)

                  gAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGaa                                                                       >  1:2483703/1‑93 (MQ=255)

                     aTGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTg                                                                    >  2:3046234/1‑93 (MQ=255)

                      tGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTGCCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGt                                                                   <  1:2186100/93‑1 (MQ=255)

                       gCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTa                                                                  <  2:2050777/93‑1 (MQ=255)

                        cTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTAc                                                                 <  2:2985321/93‑1 (MQ=255)

                         tGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACa                                                                >  1:732273/1‑93 (MQ=255)

                         tGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACa                                                                >  1:3765619/1‑93 (MQ=255)

                         tGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACa                                                                <  2:1179927/93‑1 (MQ=255)

                          gAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACaa                                                               <  2:4530825/93‑1 (MQ=255)

                           aaCAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACaaa                                                              <  1:3466346/93‑1 (MQ=255)

                            aCAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAAt                                                             <  2:2257827/93‑1 (MQ=255)

                              aaaaaaGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATaa                                                           <  2:3461824/93‑1 (MQ=255)

                              aaaaaaGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATaa                                                           <  2:2707122/93‑1 (MQ=255)

                              aaaaaaGCGGAAGAGAAAGACGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATaa                                                           <  1:3025321/93‑1 (MQ=255)

                               aataaGTGGAAGAGAAAGGCGCAATGGCCGACTAGATTTCTGAAGCTCTTAGCGGTGACGCCTGGCACGCTACGGCTGAACCTTACAaaaaaa                                                          >  2:4680467/4‑93 (MQ=255)

                               aaaaaGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATaaa                                                          <  2:2441788/93‑1 (MQ=255)

                               aaaaaGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATaaa                                                          >  1:2873537/1‑93 (MQ=255)

                               aaaaaGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGAACAAATaaa                                                          >  2:922399/1‑93 (MQ=255)

                                aaaaGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAAc                                                         >  2:1650869/1‑93 (MQ=255)

                                 aaaGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAAcc                                                        <  2:729160/93‑1 (MQ=255)

                                   aGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCt                                                      <  1:310557/93‑1 (MQ=255)

                                      ggAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGGACAAATAAACCCTCAt                                                   >  1:4362032/1‑93 (MQ=255)

                                         agagAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGt                                                >  1:1683846/1‑93 (MQ=255)

                                          gagaAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCgct                                               >  1:4655974/1‑91 (MQ=255)

                                          gagaAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTc                                               >  2:285064/1‑93 (MQ=255)

                                           agaAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCt                                              >  1:2378664/1‑93 (MQ=255)

                                              aaGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGt                                           >  1:1104839/1‑93 (MQ=255)

                                              aaGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGt                                           <  2:3551295/93‑1 (MQ=255)

                                              aaGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGt                                           >  2:3749842/1‑93 (MQ=255)

                                              aaGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGt                                           >  1:778308/1‑93 (MQ=255)

                                              aaGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGt                                           >  1:4571157/1‑93 (MQ=255)

                                                  cgcAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCcga                                       >  1:3825557/1‑93 (MQ=255)

                                                  cgcAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCcga                                       <  1:3166503/93‑1 (MQ=255)

                                                   gcAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCcgac                                      >  1:4073552/1‑93 (MQ=255)

                                                    cAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCcgacg                                     >  1:3755270/1‑93 (MQ=255)

                                                     aatggCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCcgacga                                    <  1:1696401/90‑1 (MQ=255)

                                                     aatggCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCcgacga                                    <  2:433838/90‑1 (MQ=255)

                                                     aatggCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCcgacga                                    >  1:63968/4‑93 (MQ=255)

                                                      atggCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGat                                   >  2:2125552/3‑93 (MQ=255)

                                                      atggCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGat                                   >  2:3142754/3‑93 (MQ=255)

                                                      atggCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGat                                   >  1:1012236/3‑93 (MQ=255)

                                                       tggCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGata                                  <  1:2734493/92‑1 (MQ=255)

                                                        ggCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGatat                                 <  2:359018/93‑1 (MQ=255)

                                                         gCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAATCCCTCATCGTCTTGTCCGACGATAtt                                <  2:2677791/93‑1 (MQ=255)

                                                         gCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATAtt                                <  1:4232183/93‑1 (MQ=255)

                                                         gCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATAtt                                <  1:2274701/93‑1 (MQ=255)

                                                             aCCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGccc                            >  2:2399461/1‑93 (MQ=255)

                                                               cAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGccccc                          >  2:3310593/1‑93 (MQ=255)

                                                               cAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTAAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGccccc                          <  2:528673/93‑1 (MQ=255)

                                                                 gATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCgg                        >  1:846014/1‑93 (MQ=255)

                                                                   ttACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGtt                      <  1:2172554/93‑1 (MQ=255)

                                                                   ttACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGtt                      >  1:4490647/1‑93 (MQ=255)

                                                                   ttACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGtt                      >  2:594141/1‑93 (MQ=255)

                                                                   atACTGAAGCTCGTAGCAGTGACGCGTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGtt                      <  2:1546187/92‑1 (MQ=255)

                                                                    tACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTc                     >  2:3861848/1‑93 (MQ=255)

                                                                      cTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCgg                   >  2:4286257/1‑93 (MQ=255)

                                                                       tGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCggg                  >  1:2109945/1‑93 (MQ=255)

                                                                       tGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCggg                  <  1:1452694/93‑1 (MQ=255)

                                                                       tGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCggg                  <  2:1554481/93‑1 (MQ=255)

                                                                        gAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCgggg                 <  1:1366517/93‑1 (MQ=255)

                                                                         aaGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCggggg                <  2:1945329/93‑1 (MQ=255)

                                                                          aGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGc               <  2:3398495/93‑1 (MQ=255)

                                                                           gCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCt              <  1:967275/93‑1 (MQ=255)

                                                                            cTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCtt             >  1:2821306/1‑93 (MQ=255)

                                                                             tCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCttt            <  1:3332205/93‑1 (MQ=255)

                                                                             tCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCttt            <  2:4179003/93‑1 (MQ=255)

                                                                             tCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCttt            >  2:1091996/1‑93 (MQ=255)

                                                                               gTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCttttt          <  2:3921701/93‑1 (MQ=255)

                                                                               gTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCATGTCCGACGATACTGCCCCCGGTTCGGGGGCttttt          >  1:1428294/1‑93 (MQ=255)

                                                                                tAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTGATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCtttttt         >  2:2293087/1‑93 (MQ=255)

                                                                                tAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCtttttt         >  2:2879432/1‑93 (MQ=255)

                                                                                   cGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTg      <  2:1348132/93‑1 (MQ=255)

                                                                                    ggTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCtttttttgcg     >  1:1967011/1‑90 (MQ=255)

                                                                                    ggTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTgc     >  2:1735118/1‑93 (MQ=255)

                                                                                       gACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCt  >  1:2644098/1‑93 (MQ=255)

TCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAACGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACACCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCT  >  NC_000913/3383314‑3383493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCTTCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAACGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACACCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAATG  >  NC_000913/3383311‑3383497

TCTTCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACG                                                                                               <  SRR4302535.3089627/94‑1 (MQ=60)

TCTTCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACG                                                                                               >  SRR4302535.3421376/1‑94 (MQ=60)

TCTTCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACG                                                                                               >  SRR4302535.298055/1‑94 (MQ=60)

TCTTCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACG                                                                                               <  SRR4302535.2195225/94‑1 (MQ=60)

 CTTCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGC                                                                                              >  SRR4302535.1149422/1‑94 (MQ=60)

  TTCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCC                                                                                             <  SRR4302535.3094559/94‑1 (MQ=60)

   TCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCT                                                                                            <  SRR4302535.2351075/94‑1 (MQ=60)

    CGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTG                                                                                           <  SRR4302535.2763594/94‑1 (MQ=60)

     GCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGG                                                                                          <  SRR4302535.1076913/94‑1 (MQ=60)

      CCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGC                                                                                         >  SRR4302535.4425855/1‑94 (MQ=60)

      CCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGC                                                                                         <  SRR4302535.3714435/94‑1 (MQ=60)

      CCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGC                                                                                         >  SRR4302535.4442032/1‑94 (MQ=60)

       CAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCA                                                                                        <  SRR4302535.3950211/94‑1 (MQ=60)

        AATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCAC                                                                                       >  SRR4302535.667626/1‑94 (MQ=60)

        AATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCAC                                                                                       <  SRR4302535.1557214/94‑1 (MQ=60)

        AATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCAC                                                                                       >  SRR4302535.2581752/1‑94 (MQ=60)

        AATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCAC                                                                                       >  SRR4302535.2039400/1‑94 (MQ=60)

         ATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACG                                                                                      <  SRR4302535.4275220/94‑1 (MQ=60)

           GGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCT                                                                                    >  SRR4302535.3266107/1‑94 (MQ=60)

            GATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTA                                                                                   <  SRR4302535.544287/94‑1 (MQ=60)

             ATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCGTGGCACGCTAC                                                                                  >  SRR4302535.4192500/1‑94 (MQ=60)

             ATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTAC                                                                                  <  SRR4302535.2675985/94‑1 (MQ=60)

             ATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTAC                                                                                  <  SRR4302535.4572762/94‑1 (MQ=60)

             ATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTAC                                                                                  >  SRR4302535.911375/1‑94 (MQ=60)

              TATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACG                                                                                 >  SRR4302535.3720330/1‑94 (MQ=60)

              TATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACG                                                                                 <  SRR4302535.596435/94‑1 (MQ=60)

              TATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACG                                                                                 <  SRR4302535.1879735/94‑1 (MQ=60)

              TATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACG                                                                                 <  SRR4302535.3822450/94‑1 (MQ=60)

               ATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGG                                                                                >  SRR4302535.3643606/1‑94 (MQ=60)

                 GCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCT                                                                              <  SRR4302535.4069763/94‑1 (MQ=60)

                 GCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCT                                                                              <  SRR4302535.2769619/94‑1 (MQ=60)

                 GCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCT                                                                              >  SRR4302535.3071716/1‑94 (MQ=60)

                  CGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTG                                                                             >  SRR4302535.2158669/1‑94 (MQ=60)

                  CGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTG                                                                             <  SRR4302535.4042711/94‑1 (MQ=60)

                  CGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTG                                                                             >  SRR4302535.3349918/1‑94 (MQ=60)

                   GTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGA                                                                            >  SRR4302535.1547783/1‑94 (MQ=60)

                   GTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGA                                                                            >  SRR4302535.833877/1‑94 (MQ=60)

                    TGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAA                                                                           >  SRR4302535.2501609/1‑94 (MQ=60)

                    TGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAA                                                                           >  SRR4302535.1492462/1‑94 (MQ=60)

                    TGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAA                                                                           <  SRR4302535.3858812/94‑1 (MQ=60)

                     GAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAAC                                                                          <  SRR4302535.663591/94‑1 (MQ=60)

                       AATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTG                                                                        >  SRR4302535.3175216/1‑94 (MQ=60)

                        ATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGT                                                                       >  SRR4302535.654914/1‑94 (MQ=60)

                        ATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGT                                                                       <  SRR4302535.3010035/94‑1 (MQ=60)

                         TGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTGCCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTA                                                                      <  SRR4302535.2201677/94‑1 (MQ=60)

                         TGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTA                                                                      <  SRR4302535.1003603/94‑1 (MQ=60)

                           CTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACA                                                                    >  SRR4302535.3791627/1‑94 (MQ=60)

                           CTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACA                                                                    >  SRR4302535.737414/1‑94 (MQ=60)

                           CTGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACA                                                                    >  SRR4302535.857640/1‑94 (MQ=60)

                            TGAACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAA                                                                   >  SRR4302535.1419405/1‑94 (MQ=60)

                              AACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAAT                                                                 <  SRR4302535.3490433/94‑1 (MQ=60)

                              AACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAAT                                                                 >  SRR4302535.4512333/1‑94 (MQ=60)

                              AACAAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAAT                                                                 <  SRR4302535.892545/94‑1 (MQ=60)

                                 AAAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAA                                                              >  SRR4302535.2893898/1‑94 (MQ=60)

                                 AAAAAAGCGGAAGAGAAAGACGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAA                                                              <  SRR4302535.3046500/94‑1 (MQ=60)

                                  AAAGAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAAC                                                             <  SRR4302535.428053/94‑1 (MQ=60)

                                  AAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAAC                                                             >  SRR4302535.1099286/1‑94 (MQ=60)

                                  AAAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAAC                                                             >  SRR4302535.2462090/1‑94 (MQ=60)

                                   AAAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACC                                                            <  SRR4302535.3142932/94‑1 (MQ=60)

                                    AAAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCC                                                           >  SRR4302535.4261238/1‑94 (MQ=60)

                                     AAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCT                                                          <  SRR4302535.2190698/94‑1 (MQ=60)

                                     AAGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCT                                                          >  SRR4302535.718153/1‑94 (MQ=60)

                                      AGCGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTC                                                         <  SRR4302535.312711/94‑1 (MQ=60)

                                       GCNGAANAGAAAGGCGCAATGCNCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCA                                                        <  SRR4302535.3784637/94‑1 (MQ=60)

                                        CGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCAT                                                       <  SRR4302535.4104755/94‑1 (MQ=60)

                                        CGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCAT                                                       <  SRR4302535.1698530/94‑1 (MQ=60)

                                        CGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCAT                                                       >  SRR4302535.3792977/1‑94 (MQ=60)

                                        CGGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGGACAAATAAACCCTCAT                                                       >  SRR4302535.4391883/1‑94 (MQ=60)

                                         GGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATC                                                      >  SRR4302535.1965365/1‑94 (MQ=60)

                                         GGAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATC                                                      >  SRR4302535.579775/1‑94 (MQ=60)

                                          GAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCG                                                     <  SRR4302535.411326/94‑1 (MQ=60)

                                          GAAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCG                                                     <  SRR4302535.3195585/94‑1 (MQ=60)

                                           AAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGT                                                    >  SRR4302535.1696041/1‑94 (MQ=60)

                                           AAGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGT                                                    >  SRR4302535.1446024/1‑94 (MQ=60)

                                            AGAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGct                                                   >  SRR4302535.4687482/1‑92 (MQ=60)

                                             GAGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCT                                                  >  SRR4302535.2395746/1‑94 (MQ=60)

                                              AGAAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTT                                                 >  SRR4302535.2804882/1‑94 (MQ=60)

                                                AAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGT                                               >  SRR4302535.783776/1‑94 (MQ=60)

                                                AAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGT                                               >  SRR4302535.1112735/1‑94 (MQ=60)

                                                AAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGT                                               >  SRR4302535.4602323/1‑94 (MQ=60)

                                                AAAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGT                                               <  SRR4302535.1575134/94‑1 (MQ=60)

                                                 AAGGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTC                                              <  SRR4302535.1034321/94‑1 (MQ=60)

                                                   GGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCG                                            <  SRR4302535.3474608/94‑1 (MQ=60)

                                                   GGCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCG                                            <  SRR4302535.262033/94‑1 (MQ=60)

                                                    GCGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGA                                           >  SRR4302535.3851948/1‑94 (MQ=60)

                                                     CGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGAC                                          >  SRR4302535.4241581/1‑94 (MQ=60)

                                                     CGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGAC                                          <  SRR4302535.3188447/94‑1 (MQ=60)

                                                     CGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGAC                                          <  SRR4302535.2760621/94‑1 (MQ=60)

                                                     CGCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGAC                                          >  SRR4302535.4101426/1‑94 (MQ=60)

                                                      GCAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACG                                         >  SRR4302535.3781245/1‑94 (MQ=60)

                                                       CAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGA                                        >  SRR4302535.2251253/1‑94 (MQ=60)

                                                       CAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGA                                        >  SRR4302535.3528035/1‑94 (MQ=60)

                                                       CAATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGA                                        >  SRR4302535.64450/1‑94 (MQ=60)

                                                        AATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGAT                                       >  SRR4302535.1019432/1‑94 (MQ=60)

                                                        AATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGAT                                       <  SRR4302535.1708664/94‑1 (MQ=60)

                                                         ATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATA                                      <  SRR4302535.484166/94‑1 (MQ=60)

                                                         ATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATA                                      <  SRR4302535.2743030/94‑1 (MQ=60)

                                                         ATGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATA                                      >  SRR4302535.467171/1‑94 (MQ=60)

                                                          TGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATAT                                     <  SRR4302535.400892/94‑1 (MQ=60)

                                                          TGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATAT                                     <  SRR4302535.2754004/94‑1 (MQ=60)

                                                            GCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTG                                   <  SRR4302535.45087/94‑1 (MQ=60)

                                                            GCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTG                                   <  SRR4302535.4299559/94‑1 (MQ=60)

                                                            GCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTG                                   <  SRR4302535.2290934/94‑1 (MQ=60)

                                                            GCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTG                                   <  SRR4302535.4261147/94‑1 (MQ=60)

                                                            GCCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACACTCATCGTCTTGTCCGACGATATTG                                   <  SRR4302535.267461/94‑1 (MQ=60)

                                                             CCTACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGC                                  >  SRR4302535.4012403/1‑94 (MQ=60)

                                                                ACCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCC                               <  SRR4302535.1102507/94‑1 (MQ=60)

                                                                 CCAGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCC                              <  SRR4302535.1408687/94‑1 (MQ=60)

                                                                   AGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGG                            >  SRR4302535.851953/1‑94 (MQ=60)

                                                                   AGATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGG                            >  SRR4302535.2375376/1‑94 (MQ=60)

                                                                     ATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTT                          >  SRR4302535.4521475/1‑94 (MQ=60)

                                                                     ATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTT                          >  SRR4302535.2722338/1‑94 (MQ=60)

                                                                     ATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTT                          <  SRR4302535.1488683/94‑1 (MQ=60)

                                                                     ATTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTT                          >  SRR4302535.1491150/1‑94 (MQ=60)

                                                                      TTACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTC                         <  SRR4302535.2188098/94‑1 (MQ=60)

                                                                       TACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAATCCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCG                        <  SRR4302535.2848686/94‑1 (MQ=60)

                                                                       TACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCG                        <  SRR4302535.3213172/94‑1 (MQ=60)

                                                                        ACTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGG                       <  SRR4302535.4271279/94‑1 (MQ=60)

                                                                         CTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGG                      >  SRR4302535.2125164/1‑94 (MQ=60)

                                                                         CTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGG                      <  SRR4302535.1132830/94‑1 (MQ=60)

                                                                         CTGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGG                      >  SRR4302535.3439281/1‑94 (MQ=60)

                                                                          TGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGG                     <  SRR4302535.1463091/94‑1 (MQ=60)

                                                                          TGAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGG                     <  SRR4302535.1588318/94‑1 (MQ=60)

                                                                           GAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACGAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGG                    >  SRR4302535.2984863/1‑94 (MQ=60)

                                                                           GAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGG                    <  SRR4302535.1376285/94‑1 (MQ=60)

                                                                           GAAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGG                    <  SRR4302535.4685786/94‑1 (MQ=60)

                                                                            AAGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGC                   <  SRR4302535.2196658/94‑1 (MQ=60)

                                                                             AGCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCT                  <  SRR4302535.952184/94‑1 (MQ=60)

                                                                              GCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTT                 <  SRR4302535.974147/94‑1 (MQ=60)

                                                                              GCTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTT                 >  SRR4302535.2841342/1‑94 (MQ=60)

                                                                               CTCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTT                >  SRR4302535.2142218/1‑94 (MQ=60)

                                                                                TCGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTT               <  SRR4302535.3355396/94‑1 (MQ=60)

                                                                                 CGTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCATGTCCGACGATACTGCCCCCGGTTCGGGGGCTTTTT              >  SRR4302535.1438487/1‑94 (MQ=60)

                                                                                  GTAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTT             >  SRR4302535.763602/1‑94 (MQ=60)

                                                                                   TAGCGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTT            <  SRR4302535.816479/94‑1 (MQ=60)

                                                                                      CGGTGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGC‑TTTTTTTGCG        >  SRR4302535.1981189/1‑94 (MQ=60)

                                                                                         TGACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCT      >  SRR4302535.2663034/1‑94 (MQ=60)

                                                                                          GACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTA     >  SRR4302535.31877/1‑94 (MQ=60)

                                                                                           ACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAA    >  SRR4302535.257531/1‑94 (MQ=60)

                                                                                           ACGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAA    <  SRR4302535.757874/94‑1 (MQ=60)

                                                                                            CGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAAT   <  SRR4302535.2272689/94‑1 (MQ=60)

                                                                                            CGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAAT   >  SRR4302535.381600/1‑94 (MQ=60)

                                                                                            CGCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAAT   >  SRR4302535.3214644/1‑94 (MQ=60)

                                                                                             GCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAATG  >  SRR4302535.3758355/1‑94 (MQ=60)

                                                                                             GCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAATG  <  SRR4302535.3166317/94‑1 (MQ=60)

                                                                                             GCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAATG  <  SRR4302535.2672849/94‑1 (MQ=60)

                                                                                             GCCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAATG  <  SRR4302535.1881257/94‑1 (MQ=60)

TCTTCGCCAATGGATATGCGTGAAATGCTGAACAAAAAAGCGGAAGAGAAAGGCGCAACGGCCTACCAGATTACTGAAGCTCGTAGCGGTGACACCTGGCACGCTACGGCTGAACTGTACAAATAAACCCTCATCGTCTTGTCCGACGATATTGCCCCCGGTTCGGGGGCTTTTTTTTGCGCTAATG  >  NC_000913/3383311‑3383497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`