Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,407,232 |
G→A |
A176T (GCG→ACG) |
prmA → |
PrmA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,407,232 | 0 | G | A | 98.5%
| 691.0
/ ‑2.8
| 198 | A176T (GCG→ACG) | prmA | PrmA |
| Reads supporting (aligned to +/- strand): ref base G (0/3); new base A (86/109); total (86/112) |
| Fisher's exact test for biased strand distribution p-value = 2.59e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.08e-01 |
Only 100 of 214 total aligned reads displayed.
TCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGC > NC_000913/3407142‑3407321
|
tctctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCgcgacg > 1:1147064/1‑93 (MQ=255)
tctctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCgcgacg > 1:3537024/1‑93 (MQ=255)
ctctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGacgc > 2:352304/1‑93 (MQ=255)
ctctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGacgc < 2:2894309/93‑1 (MQ=255)
tctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCt > 1:4321065/1‑93 (MQ=255)
tctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCt < 2:2685948/93‑1 (MQ=255)
tgtgCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGa > 1:4421973/1‑93 (MQ=255)
gtgCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGag < 2:1231271/93‑2 (MQ=255)
gtgCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCCCGACGCTgca > 1:2817155/1‑91 (MQ=255)
tgCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGaaa < 2:1903204/93‑1 (MQ=255)
gCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAAc < 2:4675609/93‑1 (MQ=255)
cTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTg < 2:614400/93‑1 (MQ=255)
cTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTg > 2:1840405/1‑93 (MQ=255)
cTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTg < 1:958662/93‑1 (MQ=255)
cTGCAATGGCTCGACAGCCTCGATTTAACCGGGAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATAGCGACGCTGAAACTg > 1:4054900/1‑93 (MQ=255)
tGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGGTCCGGCATTCTGGCGATCGCGACGCTGAAACTgg > 1:2793584/1‑93 (MQ=255)
gCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTggg > 1:1173540/1‑93 (MQ=255)
aaTGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTg > 1:4267154/1‑93 (MQ=255)
aaTGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTg > 2:3671226/1‑93 (MQ=255)
aaTGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTg > 2:3613440/1‑93 (MQ=255)
aTGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTgc > 2:746334/1‑93 (MQ=255)
tGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTgca < 1:1237361/93‑1 (MQ=255)
tCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCaa > 1:3651971/1‑93 (MQ=255)
gACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCaaaa > 2:2376342/1‑93 (MQ=255)
aCAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAg < 2:3454856/93‑1 (MQ=255)
aCAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAg > 1:2100179/1‑93 (MQ=255)
aGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGcc > 2:3975162/1‑93 (MQ=255)
aGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGcc < 1:2592285/93‑1 (MQ=255)
cTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCAtt > 2:4502755/1‑93 (MQ=255)
cTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCAtt > 2:328290/1‑93 (MQ=255)
tCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTg > 2:43506/1‑93 (MQ=255)
tCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTg > 2:3471515/1‑93 (MQ=255)
tCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTg > 1:4672725/1‑93 (MQ=255)
cGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTgg < 2:2584815/93‑1 (MQ=255)
gATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGt < 2:3059172/93‑1 (MQ=255)
tttAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTAt > 1:859150/1‑93 (MQ=255)
aaCCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGa < 1:3866621/93‑1 (MQ=255)
cGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGatat > 2:3341678/1‑93 (MQ=255)
cGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGatat < 2:2152255/93‑1 (MQ=255)
ggTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATc < 1:4017789/93‑1 (MQ=255)
ggTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATc < 2:799288/93‑1 (MQ=255)
gTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCg < 1:1973275/93‑1 (MQ=255)
tAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGa < 1:3395849/93‑1 (MQ=255)
tAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGa < 1:3438790/93‑1 (MQ=255)
gaaaaCAGTCATCGACTTTGGCTGTTGTTCCGGCATGCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGa < 2:2454643/92‑1 (MQ=255)
aaaaCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGAt < 2:4405347/93‑1 (MQ=255)
aaaCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATc < 1:3795469/93‑1 (MQ=255)
aaCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATcc < 2:4461395/93‑1 (MQ=255)
aaCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATcc < 1:1399987/93‑1 (MQ=255)
cAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGc > 1:101861/1‑93 (MQ=255)
cAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGc > 1:1435283/1‑93 (MQ=255)
gTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAg < 1:1732872/93‑1 (MQ=255)
gTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAg < 1:3053933/93‑1 (MQ=255)
tCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGa < 2:2740479/93‑1 (MQ=255)
tCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGa < 1:1525716/93‑1 (MQ=255)
tCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGa > 1:2536519/1‑93 (MQ=255)
tCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGa > 1:2765253/1‑93 (MQ=255)
tCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGa < 2:3323970/93‑1 (MQ=255)
cGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGAt < 2:4009711/93‑1 (MQ=255)
cGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGAt < 1:3879866/93‑1 (MQ=255)
cGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGAt < 2:4200582/93‑1 (MQ=255)
aCTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTc > 1:1908928/1‑93 (MQ=255)
aCTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTc > 1:3402638/1‑93 (MQ=255)
cTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCa > 2:1671426/1‑93 (MQ=255)
tttGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAg < 2:1433228/93‑1 (MQ=255)
ttGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAgg > 1:3580119/1‑93 (MQ=255)
tGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGc > 1:3604350/1‑93 (MQ=255)
ggttgtgGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGcc < 1:4149776/90‑1 (MQ=255)
ggCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGcc < 2:105741/93‑1 (MQ=255)
cgttgtgGTTCGGGCATTGTGGCGATCGAGTCGTGGAATCTGGGTTCAGCAAAAGCAATTGGTATTGATATCGATCCGCAGGCGATTCAGGcc < 2:1082973/90‑1 (MQ=255)
tgtgGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGc > 2:4139177/1‑93 (MQ=255)
gtgGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGcc > 2:3153905/1‑93 (MQ=255)
tgGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCcg < 1:2981219/93‑1 (MQ=255)
tgGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCcg < 1:3703081/93‑1 (MQ=255)
tgGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGCATTGATATCGATCCGCAGGCGATTCAGGCCAGcgg > 1:468468/1‑91 (MQ=255)
ttCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGa < 1:663252/93‑1 (MQ=255)
ttCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGa < 1:164285/93‑1 (MQ=255)
tCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGAt > 1:3335465/1‑93 (MQ=255)
tCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGAt < 2:4256873/93‑1 (MQ=255)
cGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGTCAGCCGCGATaa > 1:2961065/1‑93 (MQ=255)
cGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATaa < 1:1541050/93‑1 (MQ=255)
cGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATaa < 2:1984022/93‑1 (MQ=255)
cGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATaa < 1:4222217/93‑1 (MQ=255)
gCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGACATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACg > 1:3301201/1‑93 (MQ=255)
cATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGc < 1:454384/93‑1 (MQ=255)
ggCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACg < 2:821975/93‑1 (MQ=255)
ggCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACg > 1:3185393/1‑93 (MQ=255)
gCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGt > 1:3628074/1‑93 (MQ=255)
gCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGt < 2:1472845/93‑1 (MQ=255)
gATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTaa > 1:2135194/1‑93 (MQ=255)
aTCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTaag > 2:2983288/1‑92 (MQ=255)
aTCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAAt < 1:2994811/93‑1 (MQ=255)
aTCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAAt > 2:4639226/1‑93 (MQ=255)
tCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATg < 1:4302164/93‑1 (MQ=255)
tCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATg < 1:4501044/93‑1 (MQ=255)
tCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATg > 2:3867154/1‑93 (MQ=255)
tCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATg > 1:901608/1‑93 (MQ=255)
cgcgACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATgg < 2:3389636/93‑1 (MQ=255)
cgcgACGCTGAAACTGGGTGCAGCAAAAGCAATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATgg < 2:835262/93‑1 (MQ=255)
gcgacgCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGc < 2:1783861/93‑1 (MQ=255)
|
TCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGC > NC_000913/3407142‑3407321
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCGTTT > NC_000913/3407139‑3407325
|
ACCTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGA > SRR4302535.2981895/1‑94 (MQ=60)
CCTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGAC > SRR4302535.2152226/1‑94 (MQ=60)
CTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCCTTCTGGCGATCGCGCCG > SRR4302535.1542778/1‑94 (MQ=60)
CTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACG < SRR4302535.1099110/94‑1 (MQ=60)
CTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACG > SRR4302535.1155236/1‑94 (MQ=60)
CTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACG > SRR4302535.3561579/1‑94 (MQ=60)
CTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCT > SRR4302535.1676480/1‑94 (MQ=60)
CTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCT > SRR4302535.256340/1‑94 (MQ=60)
CTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCT > SRR4302535.4350623/1‑94 (MQ=60)
CTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGA > SRR4302535.4452256/1‑94 (MQ=60)
TGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCCCGACGCTGCA > SRR4302535.2837164/1‑94 (MQ=60)
TGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAAC < SRR4302535.3304069/94‑1 (MQ=60)
GCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACT < SRR4302535.3166290/94‑1 (MQ=60)
CCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTG < SRR4302535.4084393/94‑1 (MQ=60)
CCTGCAATGGCTCGACAGCCTCGATTTAACCGGGAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATAGCGACGCTGAAACTG > SRR4302535.4082664/1‑94 (MQ=60)
CTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGG < SRR4302535.965470/94‑1 (MQ=60)
CTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGGTCCGGCATTCTGGCGATCGCGACGCTGAAACTGG > SRR4302535.2813462/1‑94 (MQ=60)
TGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGG > SRR4302535.1181917/1‑94 (MQ=60)
CAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTG > SRR4302535.4296372/1‑94 (MQ=60)
TGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAG < SRR4302535.1246197/94‑1 (MQ=60)
GCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCA > SRR4302535.3423847/1‑94 (MQ=60)
GCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCA < SRR4302535.3010192/94‑1 (MQ=60)
CTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAA > SRR4302535.1488860/1‑94 (MQ=60)
CTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAA > SRR4302535.3677257/1‑94 (MQ=60)
CTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAA > SRR4302535.567781/1‑94 (MQ=60)
CGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAA > SRR4302535.4348867/1‑94 (MQ=60)
GACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAG > SRR4302535.2115326/1‑94 (MQ=60)
ACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGC > SRR4302535.3880484/1‑94 (MQ=60)
CAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCC > SRR4302535.3674280/1‑94 (MQ=60)
CAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCC < SRR4302535.1321688/94‑1 (MQ=60)
AGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCA < SRR4302535.2610906/94‑1 (MQ=60)
AGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCA < SRR4302535.3652666/94‑1 (MQ=60)
GCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCAT < SRR4302535.44898/94‑1 (MQ=60)
GCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCAT < SRR4302535.369364/94‑1 (MQ=60)
CCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATT < SRR4302535.3340729/94‑1 (MQ=60)
CCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATT > SRR4302535.2064474/1‑94 (MQ=60)
CTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTG > SRR4302535.4704280/1‑94 (MQ=60)
CTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTG < SRR4302535.99686/94‑1 (MQ=60)
CTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTG > SRR4302535.4247490/1‑94 (MQ=60)
CTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTG > SRR4302535.2791361/1‑94 (MQ=60)
ATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTAT > SRR4302535.865211/1‑94 (MQ=60)
TTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATT < SRR4302535.142484/94‑1 (MQ=60)
TTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTG < SRR4302535.3904485/94‑1 (MQ=60)
TTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTG < SRR4302535.828342/94‑1 (MQ=60)
AACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGAT < SRR4302535.3617487/94‑1 (MQ=60)
AACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGAT < SRR4302535.3893209/94‑1 (MQ=60)
ACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATA < SRR4302535.376186/94‑1 (MQ=60)
ACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATA < SRR4302535.3446808/94‑1 (MQ=60)
CGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATC > SRR4302535.3828295/1‑94 (MQ=60)
GGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCG < SRR4302535.4045274/94‑1 (MQ=60)
GTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGA < SRR4302535.1987486/94‑1 (MQ=60)
TAAAACAGTCATCGAGTCTGGCTGTTATTCAGGCATTCTGACGATCGCGAAGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGAT < SRR4302535.3062639/94‑1 (MQ=60)
TAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGAT < SRR4302535.3462708/94‑1 (MQ=60)
TAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGAT < SRR4302535.3419473/94‑1 (MQ=60)
AAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCC < SRR4302535.3821632/94‑1 (MQ=60)
AAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCC < SRR4302535.3927110/94‑1 (MQ=60)
AACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCG < SRR4302535.1409983/94‑1 (MQ=60)
ACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGC > SRR4302535.102580/1‑94 (MQ=60)
ACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGC > SRR4302535.1445534/1‑94 (MQ=60)
CAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCA > SRR4302535.2532304/1‑94 (MQ=60)
CAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCA < SRR4302535.2992656/94‑1 (MQ=60)
AGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAG < SRR4302535.4287160/94‑1 (MQ=60)
GTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGG < SRR4302535.1745396/94‑1 (MQ=60)
GTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGG < SRR4302535.3075313/94‑1 (MQ=60)
GTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGG < SRR4302535.922163/94‑1 (MQ=60)
GTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGG < SRR4302535.3570596/94‑1 (MQ=60)
CATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCG > SRR4302535.3052443/1‑94 (MQ=60)
ATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGA > SRR4302535.2554791/1‑94 (MQ=60)
ATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGA < SRR4302535.259101/94‑1 (MQ=60)
ATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGA > SRR4302535.2784948/1‑94 (MQ=60)
TCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGAT < SRR4302535.1536709/94‑1 (MQ=60)
CGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATT > SRR4302535.1971478/1‑94 (MQ=60)
CGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATT < SRR4302535.3906497/94‑1 (MQ=60)
GACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTC > SRR4302535.3426317/1‑94 (MQ=60)
GACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTC > SRR4302535.1922688/1‑94 (MQ=60)
ACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCA < SRR4302535.491129/94‑1 (MQ=60)
CTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGNTGAAACTGGGTGCNGCNAAAGCCNTNGGTATTGANANCGATCNGNAGNCNNNTNAG > SRR4302535.379352/1‑94 (MQ=60)
CTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAG < SRR4302535.2848862/94‑1 (MQ=60)
TTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGG < SRR4302535.4543707/94‑1 (MQ=60)
TTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGG < SRR4302535.1908481/94‑1 (MQ=60)
TTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGG > SRR4302535.3604932/1‑94 (MQ=60)
TTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGG > SRR4302535.1172156/1‑94 (MQ=60)
TTTGGCTGTGGTTCCGCCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGG < SRR4302535.4325528/94‑1 (MQ=60)
TTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGC > SRR4302535.3629358/1‑94 (MQ=60)
GGTTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCA < SRR4302535.4178191/94‑1 (MQ=60)
GCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAG < SRR4302535.1647355/94‑1 (MQ=60)
GTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGCATTGATATCGATCCGCAGGCGATTCAGGCCAGCGG > SRR4302535.471745/1‑94 (MQ=60)
TGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGC < SRR4302535.3002132/94‑1 (MQ=60)
TGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGC < SRR4302535.3728725/94‑1 (MQ=60)
GGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCGGGCGATTCAGGCCAGCCGCG > SRR4302535.2817384/1‑94 (MQ=60)
GGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCG > SRR4302535.1133648/1‑94 (MQ=60)
GGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCA > SRR4302535.4317348/1‑94 (MQ=60)
TTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGAT < SRR4302535.667885/94‑1 (MQ=60)
TTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGAT > SRR4302535.3358692/1‑94 (MQ=60)
TTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGAT < SRR4302535.165433/94‑1 (MQ=60)
CCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGTCAGCCGCGATAA > SRR4302535.2981850/1‑94 (MQ=60)
CCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAA < SRR4302535.4363975/94‑1 (MQ=60)
CGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAAC < SRR4302535.4251107/94‑1 (MQ=60)
CGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAAC < SRR4302535.1552162/94‑1 (MQ=60)
GGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACG < SRR4302535.2143777/94‑1 (MQ=60)
GGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGACATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACG > SRR4302535.3324156/1‑94 (MQ=60)
CATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCC < SRR4302535.457568/94‑1 (MQ=60)
TTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGA < SRR4302535.3465011/94‑1 (MQ=60)
CTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAAC > SRR4302535.267163/1‑94 (MQ=60)
CTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAAC < SRR4302535.466801/94‑1 (MQ=60)
CTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAAC < SRR4302535.4077996/94‑1 (MQ=60)
TGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACG < SRR4302535.47173/94‑1 (MQ=60)
TGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACG > SRR4302535.3207416/1‑94 (MQ=60)
GGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGT > SRR4302535.888443/1‑94 (MQ=60)
GGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGT > SRR4302535.3653219/1‑94 (MQ=60)
CGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAA > SRR4302535.2150578/1‑94 (MQ=60)
GATCGCGACGCTGAAACTGGGTGCAGCAAAATCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAAT < SRR4302535.1214608/94‑1 (MQ=60)
GATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAAT > SRR4302535.1582761/1‑94 (MQ=60)
ATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATG > SRR4302535.907992/1‑94 (MQ=60)
ATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATG < SRR4302535.3015807/94‑1 (MQ=60)
ATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATG < SRR4302535.3406360/94‑1 (MQ=60)
ATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATG > SRR4302535.3516895/1‑94 (MQ=60)
TCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGG < SRR4302535.4331597/94‑1 (MQ=60)
TCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGG < SRR4302535.4531954/94‑1 (MQ=60)
GCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCG > SRR4302535.1368672/1‑94 (MQ=60)
GCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCG > SRR4302535.2775406/1‑94 (MQ=60)
GACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCGTT < SRR4302535.2290272/94‑1 (MQ=60)
ACGCTGAAACTGGGTGCAGCAAAAGCAATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCGTTT < SRR4302535.2907312/94‑1 (MQ=60)
|
ACCTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCGTTT > NC_000913/3407139‑3407325
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
