Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,428,098	G→A	G126G (GGC→GGT)	aroE ←	dehydroshikimate reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,428,098	0	G	A	99.5%	726.4 / ‑5.6	206	G126G (GGC→GGT)	aroE	dehydroshikimate reductase
Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (83/122); total (83/123)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.81e-01

Only 100 of 213 total aligned reads displayed.

TTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCCA  >  NC_000913/3428008‑3428186

ttCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCAcc                                                                                        >  1:3974546/1‑93 (MQ=255)

ttCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCAcc                                                                                        >  1:2294901/1‑93 (MQ=255)

  ccGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGa                                                                                      <  2:4614762/93‑1 (MQ=255)

   cgcgcgGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGAt                                                                                     <  1:3031642/93‑1 (MQ=255)

     cgcgGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATaa                                                                                   <  2:1177128/93‑1 (MQ=255)

     cgcgGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATaa                                                                                   <  2:4480656/93‑1 (MQ=255)

     cgcgGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATaa                                                                                   <  1:4328649/93‑1 (MQ=255)

      gcgGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAg                                                                                  <  1:4665366/93‑1 (MQ=255)

       cgGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGc                                                                                 >  1:1417348/1‑93 (MQ=255)

        gggATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCa                                                                                <  1:4164780/93‑1 (MQ=255)

        gggATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCa                                                                                <  1:1521026/93‑1 (MQ=255)

        gggATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCa                                                                                <  2:4331666/93‑1 (MQ=255)

        gggATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCa                                                                                <  1:2908693/93‑1 (MQ=255)

         ggATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAg                                                                               >  1:3927010/1‑93 (MQ=255)

          gATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGa                                                                              >  1:3557505/1‑93 (MQ=255)

           aTACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGaa                                                                             <  1:2694827/93‑1 (MQ=255)

            tACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAAt                                                                            >  2:4151405/1‑93 (MQ=255)

             aCCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATa                                                                           <  1:2655722/93‑1 (MQ=255)

             aCCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATa                                                                           <  2:2996961/93‑1 (MQ=255)

              ccGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATAc                                                                          >  2:640503/1‑93 (MQ=255)

              ccGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATAc                                                                          <  2:1692627/93‑1 (MQ=255)

               cGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACg                                                                         >  2:4176854/1‑93 (MQ=255)

                gTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAACCAGAATACga                                                                        >  2:1096448/1‑92 (MQ=255)

                  ccGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTaa                                                                      <  2:187639/93‑1 (MQ=255)

                   cgcttagttagTGTCACCGTACAGTCGAGGTAAATGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTaaa                                                                     <  1:2073039/90‑1 (MQ=255)

                   cGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTaaa                                                                     <  2:52992/93‑1 (MQ=255)

                    gATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAAc                                                                    >  1:2929903/1‑93 (MQ=255)

                    gATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAAc                                                                    <  1:313893/93‑1 (MQ=255)

                    gATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAAc                                                                    <  1:669525/93‑1 (MQ=255)

                     aTTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAAcc                                                                   >  2:3716264/1‑93 (MQ=255)

                      ttAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCa                                                                  <  2:3667260/93‑1 (MQ=255)

                      ttAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCa                                                                  >  1:2086546/1‑93 (MQ=255)

                       tAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTCAACCAg                                                                 >  2:585074/1‑93 (MQ=255)

                       tAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAg                                                                 <  2:344803/93‑1 (MQ=255)

                       tAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAg                                                                 <  1:365597/93‑1 (MQ=255)

                        aGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAgg                                                                <  2:1991969/93‑1 (MQ=255)

                         gTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAggg                                                               >  2:4198308/1‑93 (MQ=255)

                         gTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAggg                                                               >  1:4220399/1‑93 (MQ=255)

                          ttATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGc                                                              >  1:1193308/1‑93 (MQ=255)

                            aTTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGCTGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCgg                                                            >  2:2037002/1‑93 (MQ=255)

                              tGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGAt                                                          >  1:1805383/1‑93 (MQ=255)

                                tCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATaa                                                        <  2:3507589/93‑1 (MQ=255)

                                 cACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATaaa                                                       <  1:2261077/93‑1 (MQ=255)

                                  aCCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATaaaa                                                      <  1:347858/93‑1 (MQ=255)

                                  aCCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATaaaa                                                      <  2:2081916/93‑1 (MQ=255)

                                  aCCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATaaaa                                                      <  1:748810/93‑1 (MQ=255)

                                     gCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagac                                                   >  2:2247135/1‑93 (MQ=255)

                                     gCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagac                                                   <  2:2043458/93‑1 (MQ=255)

                                       acaGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacag                                                 <  1:517248/93‑1 (MQ=255)

                                       acaGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacag                                                 >  2:150669/1‑93 (MQ=255)

                                        caGTCGAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacaga                                                <  1:2650529/93‑1 (MQ=255)

                                        caGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacaga                                                >  1:4037378/1‑93 (MQ=255)

                                        caGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacaga                                                <  2:3306965/93‑1 (MQ=255)

                                        caGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacaga                                                >  2:2960403/1‑93 (MQ=255)

                                        caGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacaga                                                <  2:2126678/93‑1 (MQ=255)

                                        caGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacaga                                                <  1:4645342/93‑1 (MQ=255)

                                         aGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAagacagac                                               <  1:2150399/93‑1 (MQ=255)

                                          gTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCCCCAGCACCGATAAGCAGAATACGTAAACAAGGGCGGATAAAAGACAGACg                                              >  2:1108987/1‑93 (MQ=255)

                                           tCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGt                                             >  1:1888203/1‑93 (MQ=255)

                                           tCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGT‑AACCAGGGCGGATAAAAGACAGACGtt                                            <  1:376644/93‑1 (MQ=255)

                                            ccAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGtt                                            <  1:4489220/93‑1 (MQ=255)

                                            ccAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGtt                                            <  1:2467840/93‑1 (MQ=255)

                                               gggAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCa                                         <  1:2626681/93‑1 (MQ=255)

                                               gggAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCa                                         <  2:2696831/93‑1 (MQ=255)

                                                 gAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGa                                       <  1:4273179/93‑1 (MQ=255)

                                                  aaaGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGAt                                      >  1:1101509/1‑93 (MQ=255)

                                                  aaaGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGAt                                      >  2:2559925/1‑93 (MQ=255)

                                                   aaGGAGTGGCAGAAGTACGCCGCGACATGCTCCAACAGCACCGATAAGAAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATc                                     >  2:4407026/1‑93 (MQ=255)

                                                        gTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTa                                <  1:1610049/93‑1 (MQ=255)

                                                        gTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTa                                >  2:3023025/1‑93 (MQ=255)

                                                        gTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTa                                >  1:4371974/1‑93 (MQ=255)

                                                        gTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGCATAAAAGACAGACGTTCCAGATCGCTTa                                >  1:2008273/1‑93 (MQ=255)

                                                         tGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTaa                               <  1:122768/93‑1 (MQ=255)

                                                         tGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTaa                               >  2:3210986/1‑93 (MQ=255)

                                                         tGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTaa                               <  1:4593748/93‑1 (MQ=255)

                                                           gCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACa                             >  1:2621748/1‑93 (MQ=255)

                                                           gCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACa                             >  2:4675115/1‑93 (MQ=255)

                                                             agtagtACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAg                           >  2:49340/1‑93 (MQ=255)

                                                                 gtaCGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTa                       <  1:3216651/93‑1 (MQ=255)

                                                                    cgccgcGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTacac                    <  2:1048534/93‑1 (MQ=255)

                                                                      ccgcGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCa                  <  1:2195164/93‑1 (MQ=255)

                                                                       cgcgAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCAt                 <  1:2343627/93‑1 (MQ=255)

                                                                       cgcgAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCAt                 <  1:4516992/93‑1 (MQ=255)

                                                                          gagaTGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCgg              >  2:3555073/1‑93 (MQ=255)

                                                                          gagaTGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCgg              >  2:3989112/1‑93 (MQ=255)

                                                                          gagaTGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCgg              >  1:1299753/1‑93 (MQ=255)

                                                                            gaTGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTa            >  2:4297451/1‑93 (MQ=255)

                                                                            gaTGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTa            >  1:3870121/1‑93 (MQ=255)

                                                                             aTGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTAt           <  2:205159/93‑1 (MQ=255)

                                                                             aTGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTAt           <  2:1528718/93‑1 (MQ=255)

                                                                               gCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTg         <  1:1858124/93‑1 (MQ=255)

                                                                                cTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGt        <  1:335833/93‑1 (MQ=255)

                                                                                cTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGt        >  1:2482302/1‑93 (MQ=255)

                                                                                 tCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTc       >  2:915015/1‑93 (MQ=255)

                                                                                 tCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTc       >  1:3295554/1‑93 (MQ=255)

                                                                                 cccaccaGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTc       <  2:2818792/92‑1 (MQ=255)

                                                                                  ccaccaGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCa      <  1:2738725/93‑1 (MQ=255)

                                                                                  ccaccaGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTCCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCa      <  2:1287171/93‑1 (MQ=255)

                                                                                     ccaGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCAccc   <  2:2464674/93‑1 (MQ=255)

                                                                                      caGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCca  <  2:4113340/93‑1 (MQ=255)

TTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCCA  >  NC_000913/3428008‑3428186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCCAGCAGG  >  NC_000913/3428005‑3428191

CTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCA                                                                                               >  SRR4302535.212189/1‑94 (MQ=60)

CTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCA                                                                                               >  SRR4302535.2786508/1‑94 (MQ=60)

 TCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGGTGCTCCACCAGCAC                                                                                              >  SRR4302535.1865679/1‑94 (MQ=60)

  CTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACC                                                                                             >  SRR4302535.2274126/1‑94 (MQ=60)

  CTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACC                                                                                             >  SRR4302535.2311317/1‑94 (MQ=60)

  CTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACC                                                                                             >  SRR4302535.4001694/1‑94 (MQ=60)

    TCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGA                                                                                           <  SRR4302535.402266/94‑1 (MQ=60)

     CCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGAT                                                                                          <  SRR4302535.1277578/94‑1 (MQ=60)

      CGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATA                                                                                         <  SRR4302535.3052867/94‑1 (MQ=60)

        CGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAG                                                                                       <  SRR4302535.4358247/94‑1 (MQ=60)

        CGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAG                                                                                       <  SRR4302535.2173509/94‑1 (MQ=60)

        CGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAG                                                                                       <  SRR4302535.232250/94‑1 (MQ=60)

        CGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAG                                                                                       <  SRR4302535.2657422/94‑1 (MQ=60)

         GCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGC                                                                                      <  SRR4302535.4696906/94‑1 (MQ=60)

         GCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGC                                                                                      >  SRR4302535.1427469/1‑94 (MQ=60)

           GGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAG                                                                                    >  SRR4302535.3953838/1‑94 (MQ=60)

           GGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAG                                                                                    <  SRR4302535.1531981/94‑1 (MQ=60)

           GGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAG                                                                                    <  SRR4302535.4193298/94‑1 (MQ=60)

           GGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAG                                                                                    <  SRR4302535.2929250/94‑1 (MQ=60)

            GGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGA                                                                                   >  SRR4302535.4555103/1‑94 (MQ=60)

            GGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGA                                                                                   >  SRR4302535.3582178/1‑94 (MQ=60)

              ATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAAT                                                                                 <  SRR4302535.2714088/94‑1 (MQ=60)

                ACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATAC                                                                               <  SRR4302535.2674750/94‑1 (MQ=60)

                ACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATAC                                                                               <  SRR4302535.3293520/94‑1 (MQ=60)

                ACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATAC                                                                               <  SRR4302535.2284287/94‑1 (MQ=60)

                 CCGTCCGATTAGTTATTGCCACCGCACAGTCCAGGGAAAGAAGTGGCAGTAGTCCGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACG                                                                              <  SRR4302535.2492692/94‑1 (MQ=60)

                  CGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGT                                                                             >  SRR4302535.1830707/1‑94 (MQ=60)

                     CCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAA                                                                          >  SRR4302535.2422223/1‑94 (MQ=60)

                      CGCTTAGTTAGTGTCACCGTACAGTCGAGGTAAATGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAAC                                                                         <  SRR4302535.2087973/94‑1 (MQ=60)

                      CGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAAC                                                                         >  SRR4302535.2950543/1‑94 (MQ=60)

                       GATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACC                                                                        <  SRR4302535.316064/94‑1 (MQ=60)

                       GATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACC                                                                        <  SRR4302535.3486378/94‑1 (MQ=60)

                       GATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACC                                                                        >  SRR4302535.1894526/1‑94 (MQ=60)

                       GATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACC                                                                        <  SRR4302535.674198/94‑1 (MQ=60)

                        ATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCA                                                                       >  SRR4302535.2101576/1‑94 (MQ=60)

                        ATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCA                                                                       >  SRR4302535.3778602/1‑94 (MQ=60)

                        ATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATAAGTAAACCA                                                                       >  SRR4302535.2677025/1‑94 (MQ=60)

                         TTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAG                                                                      <  SRR4302535.1854637/94‑1 (MQ=60)

                          TAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGG                                                                     <  SRR4302535.368111/94‑1 (MQ=60)

                           AGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGG                                                                    <  SRR4302535.695201/94‑1 (MQ=60)

                           AGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGG                                                                    >  SRR4302535.4249278/1‑94 (MQ=60)

                            GTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGC                                                                   >  SRR4302535.1201858/1‑94 (MQ=60)

                            GTTAGTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGC                                                                   <  SRR4302535.4275959/94‑1 (MQ=60)

                             TTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTATACCAGGGCG                                                                  >  SRR4302535.3665541/1‑94 (MQ=60)

                             TTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCG                                                                  <  SRR4302535.664771/94‑1 (MQ=60)

                             TTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCG                                                                  >  SRR4302535.2949719/1‑94 (MQ=60)

                               ATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGA                                                                >  SRR4302535.3960926/1‑94 (MQ=60)

                                TTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGAT                                                               >  SRR4302535.1818428/1‑94 (MQ=60)

                                  GTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAA                                                             >  SRR4302535.3923327/1‑94 (MQ=60)

                                    CACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAA                                                           <  SRR4302535.2277182/94‑1 (MQ=60)

                                     ACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAG                                                          <  SRR4302535.754076/94‑1 (MQ=60)

                                     ACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAG                                                          <  SRR4302535.350252/94‑1 (MQ=60)

                                     ACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAG                                                          <  SRR4302535.1423146/94‑1 (MQ=60)

                                       CGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGAC                                                        <  SRR4302535.2730143/94‑1 (MQ=60)

                                        GCACAGTCCAGGGAAAGGAGTGGCAGTAGTGCGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACA                                                       <  SRR4302535.4343684/94‑1 (MQ=60)

                                        GCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACA                                                       <  SRR4302535.48984/94‑1 (MQ=60)

                                         CACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAG                                                      <  SRR4302535.420298/94‑1 (MQ=60)

                                          ACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGA                                                     <  SRR4302535.467867/94‑1 (MQ=60)

                                          ACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGA                                                     <  SRR4302535.520866/94‑1 (MQ=60)

                                          ACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGA                                                     >  SRR4302535.4065015/1‑94 (MQ=60)

                                           CAGTCGAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGAC                                                    <  SRR4302535.2669509/94‑1 (MQ=60)

                                           CAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGAC                                                    <  SRR4302535.4676821/94‑1 (MQ=60)

                                            AGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACG                                                   >  SRR4302535.1664244/1‑94 (MQ=60)

                                            AGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACG                                                   <  SRR4302535.2165863/94‑1 (MQ=60)

                                            AGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACG                                                   >  SRR4302535.2103031/1‑94 (MQ=60)

                                             GTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGT                                                  >  SRR4302535.1901803/1‑94 (MQ=60)

                                             GTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGT                                                  <  SRR4302535.3244376/94‑1 (MQ=60)

                                              TCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGT‑AACCAGGGCGGATAAAAGACAGACGTTC                                                <  SRR4302535.379257/94‑1 (MQ=60)

                                               CCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTC                                                <  SRR4302535.4520037/94‑1 (MQ=60)

                                               CCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTC                                                <  SRR4302535.2485631/94‑1 (MQ=60)

                                               CCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGCGCGGATAAAAGACAGACGCTC                                                >  SRR4302535.1943381/1‑94 (MQ=60)

                                                CAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCC                                               >  SRR4302535.3548506/1‑94 (MQ=60)

                                                CAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCC                                               <  SRR4302535.1184913/94‑1 (MQ=60)

                                                 AGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCA                                              >  SRR4302535.4546984/1‑94 (MQ=60)

                                                 AGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGAACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCA                                              >  SRR4302535.3039018/1‑94 (MQ=60)

                                                  GGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAG                                             <  SRR4302535.2645503/94‑1 (MQ=60)

                                                  GGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAG                                             <  SRR4302535.3209351/94‑1 (MQ=60)

                                                  GGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAG                                             <  SRR4302535.4391828/94‑1 (MQ=60)

                                                    GAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGAT                                           >  SRR4302535.1109381/1‑94 (MQ=60)

                                                    GAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGAT                                           <  SRR4302535.4302429/94‑1 (MQ=60)

                                                    GAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGAT                                           >  SRR4302535.3305538/1‑94 (MQ=60)

                                                     AAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATC                                          <  SRR4302535.1597149/94‑1 (MQ=60)

                                                     AAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATC                                          <  SRR4302535.2100033/94‑1 (MQ=60)

                                                       AGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGC                                        >  SRR4302535.450362/1‑94 (MQ=60)

                                                        GGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCT                                       <  SRR4302535.2609519/94‑1 (MQ=60)

                                                          AGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTA                                     >  SRR4302535.4401889/1‑94 (MQ=60)

                                                          AGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGCATAAAAGACAGACGTTCCAGATCGCTTA                                     >  SRR4302535.2022737/1‑94 (MQ=60)

                                                           GTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAA                                    <  SRR4302535.1621655/94‑1 (MQ=60)

                                                            TGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAAC                                   <  SRR4302535.4625013/94‑1 (MQ=60)

                                                            TGGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAAC                                   <  SRR4302535.123631/94‑1 (MQ=60)

                                                             GGCAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACA                                  >  SRR4302535.2640543/1‑94 (MQ=60)

                                                               CAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAG                                <  SRR4302535.2294670/94‑1 (MQ=60)

                                                               CAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAG                                >  SRR4302535.2673021/1‑94 (MQ=60)

                                                               CAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAG                                <  SRR4302535.2685201/94‑1 (MQ=60)

                                                               CAGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAG                                <  SRR4302535.151683/94‑1 (MQ=60)

                                                                AGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGC                               <  SRR4302535.2642976/94‑1 (MQ=60)

                                                                AGTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGC                               <  SRR4302535.1207378/94‑1 (MQ=60)

                                                                 GTAGTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCC                              >  SRR4302535.81259/1‑94 (MQ=60)

                                                                  TAGTACGCCTCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGTATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCT                             <  SRR4302535.3969666/94‑1 (MQ=60)

                                                                    GTACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTAC                           <  SRR4302535.3238933/94‑1 (MQ=60)

                                                                     TACGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGCGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACA                          <  SRR4302535.3318911/94‑1 (MQ=60)

                                                                       CGCCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTCCCAGATCGCTTAACAAGCCTACACC                        <  SRR4302535.3078640/94‑1 (MQ=60)

                                                                         CCGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCAT                      <  SRR4302535.2210806/94‑1 (MQ=60)

                                                                          CGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATC                     <  SRR4302535.2360398/94‑1 (MQ=60)

                                                                          CGCGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATC                     <  SRR4302535.4547954/94‑1 (MQ=60)

                                                                            CGAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGG                   >  SRR4302535.1309018/1‑94 (MQ=60)

                                                                             GAGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGATAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGA                  >  SRR4302535.2076758/1‑94 (MQ=60)

                                                                              AGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTA                 >  SRR4302535.3896720/1‑94 (MQ=60)

                                                                              AGATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTA                 >  SRR4302535.3836680/1‑94 (MQ=60)

                                                                               GATGCTCCCCCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTAT                <  SRR4302535.466304/94‑1 (MQ=60)

                                                                                ATGCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAAAAAGCCTACACCATCGGTATT               <  SRR4302535.2767340/94‑1 (MQ=60)

                                                                                  GCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGT             >  SRR4302535.2500198/1‑94 (MQ=60)

                                                                                  GCTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGT             <  SRR4302535.1871523/94‑1 (MQ=60)

                                                                                   CTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTC            >  SRR4302535.3318465/1‑94 (MQ=60)

                                                                                   CTCCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTC            <  SRR4302535.338157/94‑1 (MQ=60)

                                                                                     CCACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCAC          <  SRR4302535.2758253/94‑1 (MQ=60)

                                                                                       ACCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCC        >  SRR4302535.4137371/1‑94 (MQ=60)

                                                                                        CCAGCACCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCCA       <  SRR4302535.4520995/94‑1 (MQ=60)

                                                                                         CAGCACCAATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCCAG      <  SRR4302535.4376044/94‑1 (MQ=60)

                                                                                             ACCGATAAGCAGAATACGTAAACCAGGGTGGATAAAAGACAGACGTTCCAGATCGTTTAACAAGCCTACACCATCGGTATTGTCACCCAGCAGG  <  SRR4302535.4015205/94‑1 (MQ=60)

CTCTTCCGCGCGGGATACCGTCCGATTAGTTATTGTCACCGCACAGTCCAGGGAAAGGAGTGGCAGTAGTACGCCGCGAGATGCTCCACCAGCGCCGATAAGCAGAATACGTAAACCAGGGCGGATAAAAGACAGACGTTCCAGATCGCTTAACAAGCCTACACCATCGGTATTGTCACCCAGCAGG  >  NC_000913/3428005‑3428191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`