Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,500,309	Δ1 bp	coding (333/363 nt)	b3372 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,500,308	0	C	.	100.0%	1051.0 / NA	230	coding (332/363 nt)	b3372	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (122/108); total (122/108)

Only 100 of 246 total aligned reads displayed.

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAA  >  NC_000913/3500216‑3500395

 gATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTccgcg                                                                                        <  2:1517167/93‑2 (MQ=255)

     aaCATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGccc                                                                                   >  1:4255814/1‑93 (MQ=255)

     aaCATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGccc                                                                                   <  1:2017778/93‑1 (MQ=255)

       cATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAc                                                                                 >  1:3618098/1‑93 (MQ=255)

        atatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAcg                                                                                <  2:272522/93‑1 (MQ=255)

        atatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAcg                                                                                >  2:2517419/1‑93 (MQ=255)

        atatGCGTCGCGAAAGACTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAcg                                                                                <  1:2953932/93‑1 (MQ=255)

         tatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAcgc                                                                               >  2:2633172/1‑93 (MQ=255)

         tatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGCTATACGCTGATTTCCG‑CGGCCCAcgc                                                                               >  1:581933/1‑93 (MQ=255)

          atGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAcgcg                                                                              <  2:3070463/93‑1 (MQ=255)

            gCGTCTCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCggg                                                                            <  2:3136166/93‑1 (MQ=255)

            gCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCggg                                                                            >  1:1128007/1‑93 (MQ=255)

             cGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGc                                                                           <  1:2057589/93‑1 (MQ=255)

              gTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCt                                                                          <  1:845392/93‑1 (MQ=255)

              gTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCt                                                                          <  1:1652791/93‑1 (MQ=255)

              gTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCt                                                                          >  2:3909093/1‑93 (MQ=255)

              gTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCt                                                                          <  1:2169083/93‑1 (MQ=255)

              gTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCt                                                                          <  1:2474943/93‑1 (MQ=255)

                cgctAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAt                                                                        <  2:2843442/93‑1 (MQ=255)

                 gcgACAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAtc                                                                       <  2:4685823/93‑1 (MQ=255)

                 gcgAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAtc                                                                       <  1:1469991/93‑1 (MQ=255)

                 gcgAAAGCCTCGACACGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTGATACGCTGATTTCCG‑CGGCCCACGCGGGCTAtc                                                                       <  2:301504/93‑1 (MQ=255)

                  cgAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAtct                                                                      <  2:1729279/93‑1 (MQ=255)

                  cgAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAtct                                                                      >  1:936609/1‑93 (MQ=255)

                   gAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAtctc                                                                     >  1:1986051/1‑93 (MQ=255)

                   gAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAtctc                                                                     >  2:3598955/1‑93 (MQ=255)

                    aaaGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCa                                                                    <  2:1795839/93‑1 (MQ=255)

                     aaGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCAc                                                                   >  2:1286933/1‑93 (MQ=255)

                     aaGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCAc                                                                   >  2:903570/1‑93 (MQ=255)

                      aGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACg                                                                  >  1:2645258/1‑93 (MQ=255)

                      aGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACg                                                                  >  2:2847743/1‑93 (MQ=255)

                       gCCTCGACATGATCAAGCTGGTGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGc                                                                 <  2:752726/93‑1 (MQ=255)

                       gCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGc                                                                 >  1:1615431/1‑93 (MQ=255)

                        ccTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGcc                                                                >  2:4123145/1‑93 (MQ=255)

                         cTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGccc                                                               >  1:231879/1‑92 (MQ=255)

                         cTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCa                                                               >  2:2025747/1‑93 (MQ=255)

                             aCATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTCTCTCACGCCACCTa                                                           >  2:3833760/1‑93 (MQ=255)

                              cATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTaa                                                          <  2:3731274/93‑1 (MQ=255)

                              cATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTaa                                                          >  1:4626628/1‑93 (MQ=255)

                              cATGATCAAGCTGGCGATGGATATAGCACAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGCGCTATCTCACGCGACCTaa                                                          >  1:1789829/1‑93 (MQ=255)

                               aTGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAAt                                                         <  2:2273731/93‑1 (MQ=255)

                                tGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATg                                                        >  2:1595918/1‑93 (MQ=255)

                                   tCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTa                                                     >  1:1911898/1‑93 (MQ=255)

                                   tCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTa                                                     <  1:1734054/93‑1 (MQ=255)

                                     aaGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATc                                                   >  2:4350496/1‑93 (MQ=255)

                                      aGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCt                                                  >  1:3945596/1‑93 (MQ=255)

                                      aGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCt                                                  <  2:4497030/93‑1 (MQ=255)

                                      aGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCt                                                  <  1:2049269/93‑1 (MQ=255)

                                      aGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCt                                                  <  2:1670534/93‑1 (MQ=255)

                                       gCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTg                                                 <  1:1010315/93‑1 (MQ=255)

                                        cTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTgg                                                <  1:323412/93‑1 (MQ=255)

                                          ggCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTgggg                                              <  2:866071/93‑1 (MQ=255)

                                           gCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGa                                             >  2:1097674/1‑93 (MQ=255)

                                           gCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGa                                             <  1:3867524/93‑1 (MQ=255)

                                            cGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGAc                                            >  1:728513/1‑93 (MQ=255)

                                              aTGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACgg                                          >  1:2272057/1‑93 (MQ=255)

                                              aTGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACgg                                          <  2:427396/93‑1 (MQ=255)

                                               tGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGc                                         >  2:2761225/1‑93 (MQ=255)

                                               tGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGc                                         <  1:922956/93‑1 (MQ=255)

                                               tGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGc                                         <  1:2243715/93‑1 (MQ=255)

                                               tGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGc                                         >  2:1366617/1‑93 (MQ=255)

                                                 gATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTg                                       >  1:1047578/1‑93 (MQ=255)

                                                 gATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTg                                       >  1:1248120/1‑93 (MQ=255)

                                                   tatGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGc                                     >  1:4147009/1‑93 (MQ=255)

                                                   aatGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGc                                     <  1:4503467/92‑1 (MQ=255)

                                                    atGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCa                                    >  1:2584231/1‑93 (MQ=255)

                                                    atGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCa                                    <  2:3468857/93‑1 (MQ=255)

                                                      ggCAAAAGAGATGAACGTGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCaga                                  <  2:2545759/93‑1 (MQ=255)

                                                        cAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAgaga                                <  1:3436002/93‑1 (MQ=255)

                                                         aaaaGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGaa                               <  2:3418376/93‑1 (MQ=255)

                                                         aaaaGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGaa                               >  2:733314/1‑93 (MQ=255)

                                                         aaaaGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGaa                               >  2:2358837/1‑93 (MQ=255)

                                                           aaGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAcc                             >  2:3321248/1‑93 (MQ=255)

                                                             gagaTGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTa                           >  1:3164106/1‑93 (MQ=255)

                                                               gaTGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAg                         <  1:4303072/93‑1 (MQ=255)

                                                               gaTGAACGCGGGCTATACCCTGATTTCCG‑GGGCCCACACGGGCTATCTCACGCAACACAATGTTATCTGGCGACAGCGGGCAGAGAACCTacg                         >  2:2810524/1‑91 (MQ=255)

                                                                aTGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGc                        <  1:4116064/93‑1 (MQ=255)

                                                                    aCGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAAc                    <  1:3325355/93‑1 (MQ=255)

                                                                       cgGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgt                 <  1:1481836/93‑1 (MQ=255)

                                                                       cgGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgt                 <  1:3563162/93‑1 (MQ=255)

                                                                       cgGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgt                 <  2:4062870/93‑1 (MQ=255)

                                                                         ggTTATACGCTGATTTCCG‑CGGCCCGCGCGAGCTATCTCTCGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCTAACtgtgt               <  2:2104790/93‑1 (MQ=255)

                                                                         ggTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgtgt               <  1:3335497/93‑1 (MQ=255)

                                                                           ttATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGa             <  1:2803052/93‑1 (MQ=255)

                                                                           ttATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGa             <  1:2551745/93‑1 (MQ=255)

                                                                           ttATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGa             <  2:4661994/93‑1 (MQ=255)

                                                                           ttATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGa             >  1:3595135/1‑93 (MQ=255)

                                                                            tataCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAg            <  1:4398973/93‑1 (MQ=255)

                                                                            tataCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAg            >  2:659754/1‑93 (MQ=255)

                                                                            tataCGCTGATTGCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAg            <  2:602067/93‑1 (MQ=255)

                                                                             ataCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGt           <  1:3458704/93‑1 (MQ=255)

                                                                              taCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTa          <  1:1069950/93‑1 (MQ=255)

                                                                              taCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTa          <  1:2438835/93‑1 (MQ=255)

                                                                               aCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAc         <  2:2067025/93‑1 (MQ=255)

                                                                                 gCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcgc       <  2:3298262/93‑1 (MQ=255)

                                                                                 gCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcgc       >  2:4309525/1‑93 (MQ=255)

                                                                                  cTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcgcg      >  2:1864635/1‑93 (MQ=255)

                                                                                    gATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGa    <  2:4463481/93‑1 (MQ=255)

                                                                                    gATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGa    >  1:3639742/1‑93 (MQ=255)

                                                                                      tttCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGaaa  >  1:3814164/1‑93 (MQ=255)

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAA  >  NC_000913/3500216‑3500395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATCGG  >  NC_000913/3500216‑3500402

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCG                                                                                               >  SRR4302535.266250/1‑94 (MQ=60)

 GATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGG                                                                                              >  SRR4302535.192151/1‑94 (MQ=60)

 GATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGG                                                                                              >  SRR4302535.4367607/1‑94 (MQ=60)

 GATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGG                                                                                              <  SRR4302535.4223186/94‑1 (MQ=60)

   TGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCC                                                                                           >  SRR4302535.1752214/1‑94 (MQ=60)

    GAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCC                                                                                          >  SRR4302535.4284970/1‑94 (MQ=60)

     AACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCA                                                                                         <  SRR4302535.2032314/94‑1 (MQ=60)

      ACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAC                                                                                        >  SRR4302535.1024236/1‑94 (MQ=60)

      ACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAC                                                                                        >  SRR4302535.3643179/1‑94 (MQ=60)

        ATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGC                                                                                      >  SRR4302535.925143/1‑94 (MQ=60)

        ATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGCTATACGCTGATTTCCG‑CGGCCCACGC                                                                                      >  SRR4302535.586018/1‑94 (MQ=60)

        ATATGCGTCGCGAAAGACTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGC                                                                                      <  SRR4302535.2974682/94‑1 (MQ=60)

         TATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCG                                                                                     >  SRR4302535.11516/1‑94 (MQ=60)

          ATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGG                                                                                    <  SRR4302535.3459935/94‑1 (MQ=60)

           TGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGG                                                                                   >  SRR4302535.1136061/1‑94 (MQ=60)

             CGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCT                                                                                 <  SRR4302535.2072416/94‑1 (MQ=60)

              GTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTA                                                                                <  SRR4302535.2492792/94‑1 (MQ=60)

              GTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTA                                                                                <  SRR4302535.2184622/94‑1 (MQ=60)

              GTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTA                                                                                <  SRR4302535.851327/94‑1 (MQ=60)

              GTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTA                                                                                <  SRR4302535.1664752/94‑1 (MQ=60)

                CGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATC                                                                              >  SRR4302535.2488650/1‑94 (MQ=60)

                 GCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCT                                                                             >  SRR4302535.943243/1‑94 (MQ=60)

                 GCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCT                                                                             <  SRR4302535.1480519/94‑1 (MQ=60)

                  CGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTC                                                                            >  SRR4302535.3678534/1‑94 (MQ=60)

                  CGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTC                                                                            >  SRR4302535.2000354/1‑94 (MQ=60)

                  CGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTC                                                                            <  SRR4302535.4578583/94‑1 (MQ=60)

                  CGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTC                                                                            >  SRR4302535.2049768/1‑94 (MQ=60)

                   GAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCA                                                                           >  SRR4302535.1684205/1‑94 (MQ=60)

                    AAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCAT                                                                          >  SRR4302535.2876765/1‑94 (MQ=60)

                    AAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCAC                                                                          <  SRR4302535.3354142/94‑1 (MQ=60)

                    AAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCAC                                                                          >  SRR4302535.3871641/1‑94 (MQ=60)

                     AAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACG                                                                         >  SRR4302535.2664202/1‑94 (MQ=60)

                      AGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGC                                                                        >  SRR4302535.4349511/1‑94 (MQ=60)

                      AGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGC                                                                        >  SRR4302535.1627074/1‑94 (MQ=60)

                        CCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCC                                                                      >  SRR4302535.233479/1‑94 (MQ=60)

                         CTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCAC                                                                     >  SRR4302535.2159066/1‑94 (MQ=60)

                           CGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCT                                                                   >  SRR4302535.1455330/1‑94 (MQ=60)

                            GACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTA                                                                  >  SRR4302535.4643850/1‑94 (MQ=60)

                             ACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAA                                                                 >  SRR4302535.4658039/1‑94 (MQ=60)

                             ACATGATCAAGCTGGCGATGGATATAGCACAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGCGCTATCTCACGCGACCTAA                                                                 >  SRR4302535.1802776/1‑94 (MQ=60)

                              CATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAAT                                                                >  SRR4302535.4205888/1‑94 (MQ=60)

                              CATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAAT                                                                >  SRR4302535.935668/1‑94 (MQ=60)

                              CATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAAT                                                                <  SRR4302535.3385098/94‑1 (MQ=60)

                              CATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAAT                                                                >  SRR4302535.1567915/1‑94 (MQ=60)

                               ATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATG                                                               >  SRR4302535.2037194/1‑94 (MQ=60)

                               ATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATG                                                               >  SRR4302535.3306282/1‑94 (MQ=60)

                                TGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGT                                                              <  SRR4302535.206892/94‑1 (MQ=60)

                                TGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGT                                                              <  SRR4302535.2589750/94‑1 (MQ=60)

                                 GATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTT                                                             <  SRR4302535.278833/94‑1 (MQ=60)

                                 GATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTT                                                             <  SRR4302535.3038444/94‑1 (MQ=60)

                                 GATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCAAGCCACCTAATGTT                                                             <  SRR4302535.609482/94‑1 (MQ=60)

                                  ATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTA                                                            >  SRR4302535.1925677/1‑94 (MQ=60)

                                   TCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTAT                                                           <  SRR4302535.1746587/94‑1 (MQ=60)

                                     AAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCT                                                         >  SRR4302535.3972542/1‑94 (MQ=60)

                                      AGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTG                                                        >  SRR4302535.1679078/1‑94 (MQ=60)

                                      AGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTG                                                        <  SRR4302535.2064024/94‑1 (MQ=60)

                                       GCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCTACCTAATGTTATCTGG                                                       >  SRR4302535.2445137/1‑94 (MQ=60)

                                       GCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGG                                                       <  SRR4302535.1017492/94‑1 (MQ=60)

                                        CTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGG                                                      >  SRR4302535.4166175/1‑94 (MQ=60)

                                        CTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGG                                                      <  SRR4302535.325646/94‑1 (MQ=60)

                                        CTGGCGATGGATATGACAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGG                                                      >  SRR4302535.3427711/1‑94 (MQ=60)

                                           GCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGAC                                                   <  SRR4302535.3894115/94‑1 (MQ=60)

                                           GCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGAC                                                   >  SRR4302535.733625/1‑94 (MQ=60)

                                            CGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACG                                                  >  SRR4302535.3133968/1‑94 (MQ=60)

                                             GATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGG                                                 >  SRR4302535.2288262/1‑94 (MQ=60)

                                              ATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGCC                                                >  SRR4302535.1925955/1‑94 (MQ=60)

                                               TGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCT                                               <  SRR4302535.2556830/94‑1 (MQ=60)

                                               TGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCT                                               <  SRR4302535.929497/94‑1 (MQ=60)

                                               TGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCT                                               <  SRR4302535.3339548/94‑1 (MQ=60)

                                               TGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCT                                               <  SRR4302535.2259670/94‑1 (MQ=60)

                                                GGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTG                                              >  SRR4302535.1055006/1‑94 (MQ=60)

                                                GGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTG                                              >  SRR4302535.1257026/1‑94 (MQ=60)

                                                  ATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGC                                            >  SRR4302535.4175405/1‑94 (MQ=60)

                                                   TATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCA                                           >  SRR4302535.2602794/1‑94 (MQ=60)

                                                   AATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCA                                           <  SRR4302535.4534390/94‑1 (MQ=60)

                                                    ATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAG                                          <  SRR4302535.218806/94‑1 (MQ=60)

                                                      GGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAG                                        >  SRR4302535.265186/1‑94 (MQ=60)

                                                       GCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGA                                       >  SRR4302535.3583110/1‑94 (MQ=60)

                                                        CAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAA                                      >  SRR4302535.3946795/1‑94 (MQ=60)

                                                        CAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAA                                      <  SRR4302535.3459883/94‑1 (MQ=60)

                                                         AAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAC                                     >  SRR4302535.36179/1‑94 (MQ=60)

                                                         AAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAC                                     >  SRR4302535.3634358/1‑94 (MQ=60)

                                                         AAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAC                                     <  SRR4302535.1642770/94‑1 (MQ=60)

                                                          AAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACC                                    >  SRR4302535.383772/1‑94 (MQ=60)

                                                          AAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACC                                    <  SRR4302535.1464418/94‑1 (MQ=60)

                                                           AAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCT                                   <  SRR4302535.50690/94‑1 (MQ=60)

                                                           AAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCT                                   <  SRR4302535.2097044/94‑1 (MQ=60)

                                                            AGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTA                                  >  SRR4302535.3186046/1‑94 (MQ=60)

                                                              AGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAG                                <  SRR4302535.860533/94‑1 (MQ=60)

                                                              AGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAG                                <  SRR4302535.4109865/94‑1 (MQ=60)

                                                              AGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAG                                >  SRR4302535.1083011/1‑94 (MQ=60)

                                                               GATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACGTAAGC                               >  SRR4302535.685278/1‑94 (MQ=60)

                                                               GATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGC                               <  SRR4302535.4332509/94‑1 (MQ=60)

                                                                ATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCG                              <  SRR4302535.4144238/94‑1 (MQ=60)

                                                                   AACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAAC                           >  SRR4302535.1062848/1‑94 (MQ=60)

                                                                    ACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACT                          <  SRR4302535.3348494/94‑1 (MQ=60)

                                                                    ACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACT                          <  SRR4302535.3499548/94‑1 (MQ=60)

                                                                      GCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGT                        <  SRR4302535.1853663/94‑1 (MQ=60)

                                                                      GCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGT                        <  SRR4302535.1483641/94‑1 (MQ=60)

                                                                       CGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTG                       <  SRR4302535.3587867/94‑1 (MQ=60)

                                                                       CGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTG                       <  SRR4302535.1492434/94‑1 (MQ=60)

                                                                        GGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGT                      >  SRR4302535.2415829/1‑94 (MQ=60)

                                                                         GGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTG                     <  SRR4302535.3358724/94‑1 (MQ=60)

                                                                         GGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTG                     <  SRR4302535.3630631/94‑1 (MQ=60)

                                                                          GTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGA                    >  SRR4302535.3620084/1‑94 (MQ=60)

                                                                           TTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAG                   <  SRR4302535.2570118/94‑1 (MQ=60)

                                                                           TTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAG                   <  SRR4302535.2822986/94‑1 (MQ=60)

                                                                           TTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAG                   <  SRR4302535.3209654/94‑1 (MQ=60)

                                                                            TATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGT                  <  SRR4302535.4429082/94‑1 (MQ=60)

                                                                             ATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTA                 <  SRR4302535.1611068/94‑1 (MQ=60)

                                                                             ATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTA                 >  SRR4302535.1088457/1‑94 (MQ=60)

                                                                             ATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTA                 <  SRR4302535.3482751/94‑1 (MQ=60)

                                                                             ATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTA                 >  SRR4302535.4436621/1‑94 (MQ=60)

                                                                              TACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAC                <  SRR4302535.2456405/94‑1 (MQ=60)

                                                                              TACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAC                <  SRR4302535.1077555/94‑1 (MQ=60)

                                                                               ACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACG               <  SRR4302535.2269608/94‑1 (MQ=60)

                                                                                CGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGC              >  SRR4302535.78058/1‑94 (MQ=60)

                                                                                CGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGC              >  SRR4302535.2279431/1‑94 (MQ=60)

                                                                                 GCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCG             <  SRR4302535.2315177/94‑1 (MQ=60)

                                                                                  CTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGG            <  SRR4302535.2011718/94‑1 (MQ=60)

                                                                                   TGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGA           >  SRR4302535.3664957/1‑94 (MQ=60)

                                                                                   TGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGA           <  SRR4302535.3663257/94‑1 (MQ=60)

                                                                                    GATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAA          >  SRR4302535.4113040/1‑94 (MQ=60)

                                                                                    GATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAA          <  SRR4302535.4290805/94‑1 (MQ=60)

                                                                                     ATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAA         >  SRR4302535.3840482/1‑94 (MQ=60)

                                                                                     ATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAACGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAA         >  SRR4302535.256626/1‑94 (MQ=60)

                                                                                        TCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACA      <  SRR4302535.4172303/94‑1 (MQ=60)

                                                                                           cgCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATC    >  SRR4302535.4394172/3‑94 (MQ=60)

                                                                                            GCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATCG   <  SRR4302535.473012/94‑1 (MQ=60)

                                                                                             CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATCGG  >  SRR4302535.4514042/1‑94 (MQ=60)

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATCGG  >  NC_000913/3500216‑3500402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`