Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,508,133 |
G→A |
P161L (CCG→CTG) |
yhfX ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,508,133 | 0 | G | A | 97.3%
| 648.4
/ 0.6
| 185 | P161L (CCG→CTG) | yhfX | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (4/1); new base A (77/103); total (81/104) |
| Fisher's exact test for biased strand distribution p-value = 1.70e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.77e-01 |
Only 100 of 192 total aligned reads displayed.
GTAAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCT > NC_000913/3508043‑3508222
|
tAAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGAt > 1:509663/1‑93 (MQ=255)
tAAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGAt < 1:1502682/93‑1 (MQ=255)
aaGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATa < 1:65676/93‑1 (MQ=255)
aaGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATa > 1:3014312/1‑93 (MQ=255)
aaGTCCGGCGAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATa < 2:1966318/93‑1 (MQ=255)
aGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATaa < 2:2015367/93‑1 (MQ=255)
aGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATaa < 1:1990692/93‑1 (MQ=255)
gTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATaaa < 2:3665121/93‑1 (MQ=255)
gTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATaaa > 1:437977/1‑93 (MQ=255)
gTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATaaa < 2:2306556/93‑1 (MQ=255)
gCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGaaaa > 1:1046960/1‑93 (MQ=255)
gCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGaaaa < 1:4474530/93‑1 (MQ=255)
gCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGaaaa < 2:2162117/93‑1 (MQ=255)
gCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGaaaa < 2:4090634/93‑1 (MQ=255)
cTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAat > 2:448402/1‑93 (MQ=255)
tAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAAGCGCTCTCCTGGCCCAGATAAAGAAAatc > 2:2255056/1‑93 (MQ=255)
tAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAatc > 2:3204059/1‑93 (MQ=255)
tAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAatc < 1:906605/93‑1 (MQ=255)
aaTGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAatcat < 1:2449352/93‑1 (MQ=255)
aaTGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAatcat < 1:3327095/93‑1 (MQ=255)
aaTGCAGCCCTGGCAGATGCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAatcat < 2:3772640/93‑1 (MQ=255)
aTGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAatcatc < 1:197423/93‑1 (MQ=255)
gCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCAtagt < 2:3587027/93‑1 (MQ=255)
gCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGc > 2:4260880/1‑93 (MQ=255)
gCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGc < 2:2736934/93‑1 (MQ=255)
gCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGc < 2:3513667/93‑1 (MQ=255)
gCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGc < 1:3432284/93‑1 (MQ=255)
gCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGc < 1:2798346/93‑1 (MQ=255)
gCCCTGGCAGATGCTGGATTTCGACGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGc < 1:3886757/93‑1 (MQ=255)
gCCCGGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGc < 2:1717295/93‑1 (MQ=255)
ccTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCta < 1:4676727/93‑1 (MQ=255)
ccTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCta < 2:398802/93‑1 (MQ=255)
ccTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCta > 2:1083836/1‑93 (MQ=255)
tGGCAGATTCTGGATTTCCGCGACAATCTCCGGCAACCCCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCtata < 2:3563351/93‑1 (MQ=255)
ggCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATaa < 1:706402/93‑1 (MQ=255)
gCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATaaa < 2:3578938/93‑1 (MQ=255)
aGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACt < 2:4621919/93‑1 (MQ=255)
gATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACtt > 2:255884/1‑93 (MQ=255)
gATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACtt > 1:1858100/1‑93 (MQ=255)
gATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACtt > 1:2536620/1‑93 (MQ=255)
gATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACtt < 1:1294372/93‑1 (MQ=255)
gATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTAGCCCAGATAAAGAAAATCATCGTCGCTATAAACtt > 2:2183540/1‑93 (MQ=255)
aTTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACttt > 2:1089969/1‑93 (MQ=255)
tCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTaa < 1:2139548/93‑1 (MQ=255)
cTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAag < 2:4571954/93‑1 (MQ=255)
tGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAagc > 1:3297167/1‑93 (MQ=255)
tGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAagc < 1:4565356/93‑1 (MQ=255)
tGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAagc < 1:2676124/93‑1 (MQ=255)
ggATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAagca < 2:3522985/93‑1 (MQ=255)
aTTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAagcagc > 2:2591486/1‑93 (MQ=255)
aTTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAagcagc < 2:1173078/93‑1 (MQ=255)
tttCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAgcagca < 2:1749176/93‑1 (MQ=255)
tttCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAgcagca > 1:4353139/1‑93 (MQ=255)
tttCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAgcagca < 2:2803868/93‑1 (MQ=255)
ggCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGa < 2:2692603/93‑1 (MQ=255)
ggCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGa < 1:3835531/93‑1 (MQ=255)
gCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGAc < 1:3990861/93‑1 (MQ=255)
cGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACt < 1:233524/93‑1 (MQ=255)
gACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTg > 1:1188845/1‑93 (MQ=255)
gACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTg < 2:54402/93‑1 (MQ=255)
aCAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTgg > 2:74254/1‑93 (MQ=255)
aaTCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGAt > 2:2215977/1‑93 (MQ=255)
aTCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGAtt < 2:3414267/93‑1 (MQ=255)
aTCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGAtt < 1:1645476/93‑1 (MQ=255)
aTCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGAtt < 1:2062622/93‑1 (MQ=255)
tcCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGc > 1:3241376/1‑93 (MQ=255)
tcCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGc < 1:2885829/93‑1 (MQ=255)
ccGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGcc > 1:4111326/1‑93 (MQ=255)
cGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGccc < 1:2731298/93‑1 (MQ=255)
cGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGccc > 2:4005440/1‑93 (MQ=255)
ggCAACACCTGGAGGACAAAACCGCTCTCGTGGCCAAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCGCAGACTGGATTCGCCCg < 2:2890596/93‑1 (MQ=255)
aaCACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGcc < 2:1126738/93‑1 (MQ=255)
aaCACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGcc > 1:4149672/1‑93 (MQ=255)
aaCACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGcc < 2:1004988/93‑1 (MQ=255)
acacCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCt < 1:325495/93‑1 (MQ=255)
cacCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCtt < 1:1556824/93‑1 (MQ=255)
cacCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCtt < 2:3252078/93‑1 (MQ=255)
ccgtGACGGCTAAACCACTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCa < 2:962442/90‑1 (MQ=255)
ccTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCa < 1:203861/93‑1 (MQ=255)
ccTTGAGGCCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCa < 1:814169/93‑1 (MQ=255)
cTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCAc < 2:1522027/93‑1 (MQ=255)
ttGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCAcc < 1:1260033/93‑1 (MQ=255)
ttGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCAcc < 2:2190356/93‑1 (MQ=255)
ttGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCAcc > 2:3819562/1‑93 (MQ=255)
gAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCAccgc > 1:4091833/1‑93 (MQ=255)
aaaaCCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACcgccgccgc > 1:3761745/1‑93 (MQ=255)
aaaCCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCa > 1:1102077/1‑93 (MQ=255)
aCCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGa > 2:634211/1‑93 (MQ=255)
cGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGaaa > 2:2662113/1‑93 (MQ=255)
gCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAAc < 2:1238387/93‑1 (MQ=255)
gCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAAc < 2:1313928/93‑1 (MQ=255)
tctcCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACtt > 1:3163301/1‑93 (MQ=255)
tctcCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACtt > 1:2555417/1‑93 (MQ=255)
ctcCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTc < 1:4128217/93‑1 (MQ=255)
ctcCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTc > 2:2366438/1‑93 (MQ=255)
ccTGGCCCATATAAAAAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCCCCCGGCCTTCACCGCCGCCGCGGAAACTTccc < 2:3428766/93‑1 (MQ=255)
tGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCcgc > 2:3831666/1‑93 (MQ=255)
ggCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCcgcg < 2:3653637/93‑1 (MQ=255)
cccAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCt < 1:3664829/93‑1 (MQ=255)
cccAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCt > 1:327017/1‑93 (MQ=255)
|
GTAAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCT > NC_000913/3508043‑3508222
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTAAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGT > NC_000913/3508043‑3508226
|
GTAAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGAT > SRR4302535.513226/1‑94 (MQ=60)
TAAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATA > SRR4302535.3035439/1‑94 (MQ=60)
TAAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATA < SRR4302535.1513493/94‑1 (MQ=60)
TAAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATA > SRR4302535.3616925/1‑94 (MQ=60)
AAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAA < SRR4302535.66169/94‑1 (MQ=60)
AGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAA < SRR4302535.702494/94‑1 (MQ=60)
AGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAA < SRR4302535.2005026/94‑1 (MQ=60)
AGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAA > SRR4302535.4478841/1‑94 (MQ=60)
AGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAA > SRR4302535.441041/1‑94 (MQ=60)
GTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAG < SRR4302535.509494/94‑1 (MQ=60)
GGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAA > SRR4302535.1054382/1‑94 (MQ=60)
GCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAAT < SRR4302535.4505231/94‑1 (MQ=60)
CTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATC > SRR4302535.375994/1‑94 (MQ=60)
TAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCA < SRR4302535.913040/94‑1 (MQ=60)
AATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATC < SRR4302535.2467002/94‑1 (MQ=60)
AATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATC < SRR4302535.3350247/94‑1 (MQ=60)
ATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCG > SRR4302535.2993188/1‑94 (MQ=60)
ATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCG < SRR4302535.198781/94‑1 (MQ=60)
GCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTC < SRR4302535.4574511/94‑1 (MQ=60)
GCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCT < SRR4302535.2818259/94‑1 (MQ=60)
GCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCT < SRR4302535.2158990/94‑1 (MQ=60)
GCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCT < SRR4302535.3456136/94‑1 (MQ=60)
GCCCTGGCAGATGCTGGATTTCGACGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCT < SRR4302535.3913417/94‑1 (MQ=60)
CCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGCTAAAGAAAATCATCGTCGCTA > SRR4302535.2067539/1‑94 (MQ=60)
CCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTAT < SRR4302535.4708293/94‑1 (MQ=60)
CTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATA > SRR4302535.1992727/1‑94 (MQ=60)
CTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATA < SRR4302535.1236292/94‑1 (MQ=60)
GGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAA < SRR4302535.711363/94‑1 (MQ=60)
GCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAAC < SRR4302535.2769353/94‑1 (MQ=60)
CAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACT < SRR4302535.2510295/94‑1 (MQ=60)
AGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTT > SRR4302535.2554893/1‑94 (MQ=60)
AGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTT > SRR4302535.849864/1‑94 (MQ=60)
AGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTT > SRR4302535.1871499/1‑94 (MQ=60)
GATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTT < SRR4302535.1303599/94‑1 (MQ=60)
TCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAG < SRR4302535.2154956/94‑1 (MQ=60)
CTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGC > SRR4302535.3320090/1‑94 (MQ=60)
TGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCA < SRR4302535.4596504/94‑1 (MQ=60)
TGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCA < SRR4302535.2695270/94‑1 (MQ=60)
TGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCA > SRR4302535.4051371/1‑94 (MQ=60)
GGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAG > SRR4302535.2025282/1‑94 (MQ=60)
GGATGTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAG < SRR4302535.1936040/94‑1 (MQ=60)
ATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCA > SRR4302535.4382930/1‑94 (MQ=60)
TTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCAC < SRR4302535.971516/94‑1 (MQ=60)
TTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACA < SRR4302535.237011/94‑1 (MQ=60)
TCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAG < SRR4302535.791655/94‑1 (MQ=60)
GGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGAC > SRR4302535.4150388/1‑94 (MQ=60)
GGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGAC > SRR4302535.26137/1‑94 (MQ=60)
GGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGAC < SRR4302535.3861979/94‑1 (MQ=60)
GCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACT < SRR4302535.4018158/94‑1 (MQ=60)
CGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTG < SRR4302535.235137/94‑1 (MQ=60)
CGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTG > SRR4302535.3377739/1‑94 (MQ=60)
CGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTG > SRR4302535.1197359/1‑94 (MQ=60)
GACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGG < SRR4302535.2743352/94‑1 (MQ=60)
ACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGA > SRR4302535.1563755/1‑94 (MQ=60)
CAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAGGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGAT < SRR4302535.1725950/94‑1 (MQ=60)
CAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGAT < SRR4302535.3837078/94‑1 (MQ=60)
CAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGAT < SRR4302535.284748/94‑1 (MQ=60)
AATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATT < SRR4302535.1377522/94‑1 (MQ=60)
ATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTC < SRR4302535.1657367/94‑1 (MQ=60)
ATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTC < SRR4302535.2077491/94‑1 (MQ=60)
CTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGC > SRR4302535.3263887/1‑94 (MQ=60)
TCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCC < SRR4302535.2906246/94‑1 (MQ=60)
TCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCC > SRR4302535.4139468/1‑94 (MQ=60)
CGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCG > SRR4302535.3223714/1‑94 (MQ=60)
CGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCG < SRR4302535.2750796/94‑1 (MQ=60)
GGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGG > SRR4302535.439026/1‑94 (MQ=60)
CAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCC > SRR4302535.3335109/1‑94 (MQ=60)
CAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCC > SRR4302535.4178086/1‑94 (MQ=60)
AACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATTATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCT < SRR4302535.2562648/94‑1 (MQ=60)
ACACCTTGAGGGCATAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTT < SRR4302535.3160845/94‑1 (MQ=60)
ACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTT > SRR4302535.1160978/1‑94 (MQ=60)
ACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTT > SRR4302535.4135381/1‑94 (MQ=60)
ACACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTT < SRR4302535.327749/94‑1 (MQ=60)
CACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTC < SRR4302535.1568049/94‑1 (MQ=60)
ACCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCA > SRR4302535.1649540/1‑94 (MQ=60)
CCTTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCAC < SRR4302535.205257/94‑1 (MQ=60)
CCTTGAGGCCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCAC < SRR4302535.819879/94‑1 (MQ=60)
TTGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCG < SRR4302535.1269050/94‑1 (MQ=60)
TGAGGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGC > SRR4302535.4119830/1‑94 (MQ=60)
GGGCAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGC < SRR4302535.1280671/94‑1 (MQ=60)
CAAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGC > SRR4302535.3787739/1‑94 (MQ=60)
AAAACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCA > SRR4302535.1109952/1‑94 (MQ=60)
AAACCGCTCTCCTGGCACAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAG < SRR4302535.3498238/94‑1 (MQ=60)
ACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAA < SRR4302535.4239916/94‑1 (MQ=60)
ACCGCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAA < SRR4302535.3866828/94‑1 (MQ=60)
GCTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACT < SRR4302535.4688945/94‑1 (MQ=60)
CTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTT > SRR4302535.3185239/1‑94 (MQ=60)
CTCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTT > SRR4302535.2573820/1‑94 (MQ=60)
TCTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTC > SRR4302535.3305491/1‑94 (MQ=60)
CTCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCC < SRR4302535.4156467/94‑1 (MQ=60)
TCCTGGCCCAGATAAAGAAAATCATCGTCGCTATAAACTGTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCC < SRR4302535.616920/94‑1 (MQ=60)
GCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCT > SRR4302535.329283/1‑94 (MQ=60)
GCCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCT < SRR4302535.3927684/94‑1 (MQ=60)
CCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTT < SRR4302535.3277313/94‑1 (MQ=60)
CCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTT < SRR4302535.3690208/94‑1 (MQ=60)
CCCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTT > SRR4302535.1104655/1‑94 (MQ=60)
CCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCCCCGCCGCCGCAGAAACTTCCCGCGCTTT > SRR4302535.3543378/1‑94 (MQ=60)
CCAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTT > SRR4302535.315102/1‑94 (MQ=60)
CAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTG > SRR4302535.525957/1‑94 (MQ=60)
CAGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTG < SRR4302535.4477479/94‑1 (MQ=60)
AGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGT > SRR4302535.2649877/1‑94 (MQ=60)
|
GTAAGTCCGGCTAAATGCAGCCCTGGCAGATTCTGGATTTCGGCGACAATCTCCGGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGT > NC_000913/3508043‑3508226
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
