Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,531,282 |
A→G |
D276G (GAC→GGC) |
pckA → |
phosphoenolpyruvate carboxykinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,531,282 | 0 | A | G | 98.6%
| 645.1
/ ‑1.4
| 212 | D276G (GAC→GGC) | pckA | phosphoenolpyruvate carboxykinase |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base G (97/112); total (98/114) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.12e-01 |
Only 100 of 228 total aligned reads displayed.
TCTTCGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGACGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCCGTC > NC_000913/3531192‑3531371
|
tcttcGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCg > 1:4641611/1‑93 (MQ=255)
tcGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGgcggcg > 1:157856/1‑93 (MQ=255)
ggCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGGTGgcggcgcg > 1:1240344/1‑91 (MQ=255)
ggCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCgtg < 1:3750201/93‑1 (MQ=255)
ggCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCgtg > 1:223596/1‑93 (MQ=255)
gCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCgtgt < 1:4158830/93‑1 (MQ=255)
gCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCgtgt > 2:402690/1‑93 (MQ=255)
ccTTTCCGGCACCGGTAAAACCCCCCTTTCCACCGACCGGAAACGTCGCCGGATTGGCGATGACGAACCCGGCTGGGACGATGGCGGCGTGtt < 2:1471670/93‑1 (MQ=255)
ccTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGtt < 2:1219017/93‑1 (MQ=255)
ccTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGtt > 2:2269259/1‑93 (MQ=255)
cTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGttt < 1:3469614/93‑1 (MQ=255)
cTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGttt > 1:3400104/1‑93 (MQ=255)
ttCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTaa < 1:671287/93‑1 (MQ=255)
ttCCGGCACCGATAAAACCCCCCTTTCCGCCGACCCGAAACGGCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTaa < 2:1743074/93‑1 (MQ=255)
tCCGGCACCGGTAAAACCACCCTTGCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAAc < 1:2876204/93‑1 (MQ=255)
ggCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTc > 2:2664339/1‑93 (MQ=255)
ggCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTc < 1:3600684/93‑1 (MQ=255)
ggCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGGTTAACTTc > 2:2988014/1‑93 (MQ=255)
gCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCg > 1:3636975/1‑93 (MQ=255)
cACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTCCGa < 2:768718/93‑1 (MQ=255)
cccGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGaa < 1:899345/92‑1 (MQ=255)
aCCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGaa < 1:2064513/93‑1 (MQ=255)
aCCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGaa < 1:1173883/93‑1 (MQ=255)
ccGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAg > 1:4058996/1‑93 (MQ=255)
ccGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAg < 1:366084/93‑1 (MQ=255)
cGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAgg < 2:1100287/93‑1 (MQ=255)
cGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAgg > 2:2880079/1‑93 (MQ=255)
ggTAAAACCACCCTTTCCGCCGCCCCGAACCGTCGCCTGATTGGCGATGGCGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAggc < 2:817331/93‑1 (MQ=255)
ggTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAggc > 2:445313/1‑93 (MQ=255)
gTAAAGCCACCCTTTCCACCGACGCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAggcg < 2:1591110/93‑1 (MQ=255)
gTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAggcg > 2:3841997/1‑93 (MQ=255)
aaaaCCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAggcggc < 1:183268/93‑1 (MQ=255)
aaaCCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAAGCGgct > 1:4440666/1‑93 (MQ=255)
accaccCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGgctgc > 2:104007/1‑93 (MQ=255)
ccaccCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGgctgct > 1:4564653/1‑93 (MQ=255)
cccTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACg > 2:3749625/1‑93 (MQ=255)
ccTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGc > 1:3929605/1‑93 (MQ=255)
tCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCaaaa > 1:2649968/1‑93 (MQ=255)
cgaCCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCaaaaa < 1:2995433/91‑1 (MQ=255)
cACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAAc < 2:59062/93‑1 (MQ=255)
cACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAAc > 2:4072407/1‑93 (MQ=255)
cACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAAc < 1:1274467/93‑1 (MQ=255)
cACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGACGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAAc > 2:3962331/1‑93 (MQ=255)
aCCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACt > 1:3107999/1‑93 (MQ=255)
ccGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTa > 2:2570253/1‑93 (MQ=255)
ccGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTa < 2:2824599/93‑1 (MQ=255)
ccGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTa < 1:953571/93‑1 (MQ=255)
gACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATc < 2:345889/93‑1 (MQ=255)
gACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATc < 1:3151780/93‑1 (MQ=255)
gcccGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCa < 1:531176/92‑1 (MQ=255)
aCCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCa < 2:2320296/93‑1 (MQ=255)
cccGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCaa > 1:1715192/1‑93 (MQ=255)
ccGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTAtacag > 1:1839018/1‑89 (MQ=255)
ccGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAg > 2:199907/1‑93 (MQ=255)
cGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGc > 1:1531270/1‑93 (MQ=255)
gAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCt > 1:635122/1‑93 (MQ=255)
aaCGTCGCCTGATTGGCGATGACGAACACGCCTGGGACGATGGCGGCGTGTTTAACGTCGAACGCGGCTGCCACGCAAAAACTATCAAGCTGt > 1:1055532/1‑93 (MQ=255)
aCGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTc < 2:1862336/93‑1 (MQ=255)
gTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGa > 1:2089783/1‑93 (MQ=255)
gTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTGAAATTCGAAGGCGGCTGCTACGCCAAAACTATCAAGCTGCCGa > 2:4656767/1‑93 (MQ=255)
tCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGaa > 2:1529835/1‑93 (MQ=255)
cGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGaaa < 1:4592112/93‑1 (MQ=255)
cTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAaagaa > 2:1142699/1‑93 (MQ=255)
cTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAaagaa > 1:1001316/1‑93 (MQ=255)
tGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAaagaag < 2:4283393/93‑1 (MQ=255)
tGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAaagaag > 2:3418256/1‑93 (MQ=255)
gATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGc > 2:1314523/1‑93 (MQ=255)
gATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGc < 2:670684/93‑1 (MQ=255)
gATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGc > 1:590782/1‑93 (MQ=255)
aTTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCg > 1:806069/1‑93 (MQ=255)
aTTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCg < 2:1191990/93‑1 (MQ=255)
aTTGGCGATGACGAACACGGCTGGGACGATGGCGGCGGGTTTTACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCg > 1:4684825/1‑93 (MQ=255)
ttGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCgg > 2:1898399/1‑93 (MQ=255)
ttGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCgg > 2:3366907/1‑93 (MQ=255)
tGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGa < 1:1804942/93‑1 (MQ=255)
tgCGATGACGAACACGGCTGGGACGATGTCAGCGTGGATAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGaa < 1:3803126/92‑1 (MQ=255)
cGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAAcc < 2:2791563/93‑1 (MQ=255)
gATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCt < 1:2319858/93‑1 (MQ=255)
gATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCt > 2:3811538/1‑93 (MQ=255)
gACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGaa > 2:3923794/1‑93 (MQ=255)
gAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATc < 2:2449298/93‑1 (MQ=255)
gAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATc > 2:1611228/1‑93 (MQ=255)
gAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATc < 1:2180744/93‑1 (MQ=255)
acacGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTa < 2:4416264/93‑1 (MQ=255)
acacGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTa < 1:2712957/93‑1 (MQ=255)
cacGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTAc < 2:3127279/93‑1 (MQ=255)
cGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACaa < 1:2540195/93‑1 (MQ=255)
cGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACaa > 1:2848727/1‑93 (MQ=255)
cGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACaa > 2:370482/1‑93 (MQ=255)
cGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACaa < 1:1407677/93‑1 (MQ=255)
cGGCTGGGACGATGGCGGCGTGTTTAAATTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGGACCTGAAATCTACaa > 2:4640316/1‑93 (MQ=255)
cTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGc < 2:2296256/93‑1 (MQ=255)
tGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCt > 2:3089310/1‑93 (MQ=255)
gggACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTa > 2:3260950/1‑93 (MQ=255)
gggACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTa < 1:1667394/93‑1 (MQ=255)
ggACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTAt < 1:1876250/93‑1 (MQ=255)
gACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATc < 1:1851240/93‑1 (MQ=255)
gACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATc > 2:2520905/1‑93 (MQ=255)
aCGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATcc < 1:712022/93‑1 (MQ=255)
gATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCcgt > 2:4580799/1‑93 (MQ=255)
|
TCTTCGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGACGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCCGTC > NC_000913/3531192‑3531371
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTCTTCGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGACGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCCGTCGTG > NC_000913/3531190‑3531374
|
GTTCTTCGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGC > SRR4302535.2499616/1‑94 (MQ=60)
TTCTTCGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCG > SRR4302535.4673077/1‑94 (MQ=60)
CTTCGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGC > SRR4302535.2922554/1‑94 (MQ=60)
TTCGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCG > SRR4302535.158970/1‑94 (MQ=60)
CGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGGTGGCGGCGCG > SRR4302535.1249199/1‑94 (MQ=60)
CGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTG > SRR4302535.813339/1‑94 (MQ=60)
CGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTG > SRR4302535.225135/1‑94 (MQ=60)
GGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGT < SRR4302535.3776148/94‑1 (MQ=60)
GGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGT > SRR4302535.2210808/1‑94 (MQ=60)
GCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTT < SRR4302535.1848479/94‑1 (MQ=60)
GCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTT < SRR4302535.4187295/94‑1 (MQ=60)
CCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTT < SRR4302535.4648121/94‑1 (MQ=60)
CCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTT > SRR4302535.4611724/1‑94 (MQ=60)
CCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTT > SRR4302535.3423767/1‑94 (MQ=60)
CCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTT > SRR4302535.4145696/1‑94 (MQ=60)
CTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTA < SRR4302535.3493725/94‑1 (MQ=60)
CTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGGGTTTA > SRR4302535.267715/1‑94 (MQ=60)
TTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAAC < SRR4302535.675973/94‑1 (MQ=60)
TCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACT < SRR4302535.523578/94‑1 (MQ=60)
TCCGGCACCGGTAAAACCACCCTTGCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACT < SRR4302535.2896578/94‑1 (MQ=60)
CCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTT < SRR4302535.168295/94‑1 (MQ=60)
GGCACCGGTAAAACCGCCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCG < SRR4302535.1834187/94‑1 (MQ=60)
GGCACCGGTAAAACCACCCTTTCCACCGGCCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCG < SRR4302535.1622699/94‑1 (MQ=60)
GGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCG > SRR4302535.3662178/1‑94 (MQ=60)
GGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCG < SRR4302535.3625669/94‑1 (MQ=60)
CCCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAG < SRR4302535.905714/94‑1 (MQ=60)
ACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAG > SRR4302535.4086778/1‑94 (MQ=60)
ACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAG < SRR4302535.1182263/94‑1 (MQ=60)
ACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAG < SRR4302535.347272/94‑1 (MQ=60)
ACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAG < SRR4302535.2079395/94‑1 (MQ=60)
CCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGGCGATGGCGGCGTGTTTAACTTCGAAGG > SRR4302535.1504194/1‑94 (MQ=60)
CCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGG < SRR4302535.368604/94‑1 (MQ=60)
CGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGC > SRR4302535.2553173/1‑94 (MQ=60)
CGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGC < SRR4302535.1593757/94‑1 (MQ=60)
TAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGC > SRR4302535.1551163/1‑94 (MQ=60)
AAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCT < SRR4302535.184531/94‑1 (MQ=60)
AAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCT < SRR4302535.606400/94‑1 (MQ=60)
AAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCT < SRR4302535.3673907/94‑1 (MQ=60)
AAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAAGCGGCT > SRR4302535.4471105/1‑94 (MQ=60)
AACCCCCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGC < SRR4302535.266927/94‑1 (MQ=60)
AACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGT > SRR4302535.2097079/1‑94 (MQ=60)
ACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCT > SRR4302535.4595800/1‑94 (MQ=60)
CCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGTCGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTA > SRR4302535.4601115/1‑94 (MQ=60)
CCCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACG < SRR4302535.3350434/94‑1 (MQ=60)
ACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACG < SRR4302535.174897/94‑1 (MQ=60)
CCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGC > SRR4302535.3956444/1‑94 (MQ=60)
CTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGAGGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAA > SRR4302535.707168/1‑94 (MQ=60)
TTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAA > SRR4302535.2668943/1‑94 (MQ=60)
TCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAA < SRR4302535.3468609/94‑1 (MQ=60)
CGACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAAC < SRR4302535.3016430/94‑1 (MQ=60)
CACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACT > SRR4302535.3055807/1‑94 (MQ=60)
CACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACT > SRR4302535.3129638/1‑94 (MQ=60)
CACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACT < SRR4302535.1283565/94‑1 (MQ=60)
CCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTAT < SRR4302535.960327/94‑1 (MQ=60)
CGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATC < SRR4302535.1872277/94‑1 (MQ=60)
GACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCA > SRR4302535.68234/1‑94 (MQ=60)
GACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCA < SRR4302535.3173683/94‑1 (MQ=60)
GCCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAA < SRR4302535.534894/94‑1 (MQ=60)
ACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAA > SRR4302535.1727595/1‑94 (MQ=60)
ACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAA > SRR4302535.3014019/1‑94 (MQ=60)
ACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAA > SRR4302535.223601/1‑94 (MQ=60)
CCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATacag > SRR4302535.1852282/1‑90 (MQ=60)
CCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAG < SRR4302535.1323215/94‑1 (MQ=60)
CCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGC > SRR4302535.2879507/1‑94 (MQ=60)
CCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGC > SRR4302535.1542302/1‑94 (MQ=60)
CCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGC < SRR4302535.4683433/94‑1 (MQ=60)
CCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGC > SRR4302535.201721/1‑94 (MQ=60)
CGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCT > SRR4302535.639547/1‑94 (MQ=60)
AAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGT < SRR4302535.95668/94‑1 (MQ=60)
AAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGT < SRR4302535.1854812/94‑1 (MQ=60)
AAACGTCGCCTGATTGGCGATGACGAACACGCCTGGGACGATGGCGGCGTGTTTAACGTCGAACGCGGCTGCCACGCAAAAACTATCAAGCTGT > SRR4302535.1063036/1‑94 (MQ=60)
AACGTCGCCTGATTGGCGATGACGAACACGGCTGGGGCGATGGCGGCGGGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGCC > SRR4302535.3524355/1‑94 (MQ=60)
CGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGA > SRR4302535.2104841/1‑94 (MQ=60)
CGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAG < SRR4302535.4623371/94‑1 (MQ=60)
CGCCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAG < SRR4302535.379296/94‑1 (MQ=60)
CCTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAA > SRR4302535.1008431/1‑94 (MQ=60)
CTGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAG > SRR4302535.3129934/1‑94 (MQ=60)
CTGATGGGCGATGACGACCACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAG < SRR4302535.792548/94‑1 (MQ=60)
TGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGCAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGC > SRR4302535.1280573/1‑94 (MQ=60)
TGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGC > SRR4302535.594919/1‑94 (MQ=60)
TGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGC < SRR4302535.4200953/94‑1 (MQ=60)
TGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGC < SRR4302535.1073992/94‑1 (MQ=60)
TGATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGGCGAAAGAAGC > SRR4302535.2857454/1‑94 (MQ=60)
GATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCG > SRR4302535.2636987/1‑94 (MQ=60)
GATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCG > SRR4302535.811723/1‑94 (MQ=60)
GATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCG < SRR4302535.3633344/94‑1 (MQ=60)
GATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCG > SRR4302535.529564/1‑94 (MQ=60)
GATTGGCGATGACGAACACGGCTGGGACGATGGCGGCGGGTTTTACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCG > SRR4302535.4716527/1‑94 (MQ=60)
TTGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGA < SRR4302535.3759184/94‑1 (MQ=60)
TGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAA < SRR4302535.1817986/94‑1 (MQ=60)
TGGCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAA < SRR4302535.577429/94‑1 (MQ=60)
TGCGATGACGAACACGGCTGGGACGATGTCAGCGTGGATAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAAC < SRR4302535.3829343/94‑1 (MQ=60)
GGCGATGACGAACACGGCTGGGACGATGGCAGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAAC < SRR4302535.1912951/94‑1 (MQ=60)
GCGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACC < SRR4302535.1237974/94‑1 (MQ=60)
CGATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCT < SRR4302535.3752917/94‑1 (MQ=60)
GATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTG > SRR4302535.662487/1‑94 (MQ=60)
GATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTG < SRR4302535.2336463/94‑1 (MQ=60)
GATGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTG > SRR4302535.952261/1‑94 (MQ=60)
TGACGAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAA > SRR4302535.1832557/1‑94 (MQ=60)
GAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCT > SRR4302535.3864139/1‑94 (MQ=60)
GAACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCT < SRR4302535.2196305/94‑1 (MQ=60)
AACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTA < SRR4302535.1059607/94‑1 (MQ=60)
AAAACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTA < SRR4302535.4072565/94‑1 (MQ=60)
ACACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTAC < SRR4302535.2732342/94‑1 (MQ=60)
CACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACA < SRR4302535.3543304/94‑1 (MQ=60)
ACGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAA > SRR4302535.2868913/1‑94 (MQ=60)
CGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAAC < SRR4302535.1417735/94‑1 (MQ=60)
CGGCTGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAAC < SRR4302535.2558491/94‑1 (MQ=60)
TGGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTA > SRR4302535.3985887/1‑94 (MQ=60)
GGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGACAGAAGCGGCACCTGAAATCTACACCGCTAC > SRR4302535.2123797/1‑94 (MQ=60)
GGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTAT < SRR4302535.1259319/94‑1 (MQ=60)
GGGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTAT < SRR4302535.1679457/94‑1 (MQ=60)
GGACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATC < SRR4302535.1889762/94‑1 (MQ=60)
GACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCC < SRR4302535.1864578/94‑1 (MQ=60)
GACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCC < SRR4302535.2261190/94‑1 (MQ=60)
ACGATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCCG < SRR4302535.717020/94‑1 (MQ=60)
ACGATGACGGCGTGTTTAACTTCGAAGGTGGCTGCGACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCCG < SRR4302535.4505877/94‑1 (MQ=60)
ATGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGCATGAAGCGGAACCTGAAATCTACAACGCTATCCGTCG > SRR4302535.1498226/1‑94 (MQ=60)
TGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCCGTCGT < SRR4302535.3794281/94‑1 (MQ=60)
TGGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCCGTCGT > SRR4302535.1363091/1‑94 (MQ=60)
GGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCCGTCGTG < SRR4302535.3489063/94‑1 (MQ=60)
GGCGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCCGTCGTG < SRR4302535.2975710/94‑1 (MQ=60)
|
GTTCTTCGGCCTTTCCGGCACCGGTAAAACCACCCTTTCCACCGACCCGAAACGTCGCCTGATTGGCGATGACGAACACGGCTGGGACGATGACGGCGTGTTTAACTTCGAAGGCGGCTGCTACGCAAAAACTATCAAGCTGTCGAAAGAAGCGGAACCTGAAATCTACAACGCTATCCGTCGTG > NC_000913/3531190‑3531374
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
