Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,579,794 |
T→C |
Y101H (TAT→CAT) |
yhhZ → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,579,794 | 0 | T | C | 99.2%
| 377.5
/ ‑4.9
| 120 | Y101H (TAT→CAT) | yhhZ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (92/27); total (92/28) |
| Fisher's exact test for biased strand distribution p-value = 2.33e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.59e-01 |
Only 100 of 132 total aligned reads displayed.
CCATTATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGTATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATT > NC_000913/3579704‑3579883
|
ccATTATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGcat > 1:2584966/1‑93 (MQ=255)
cATTATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGcatt < 1:2968862/93‑1 (MQ=255)
atttattAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGcattatta > 1:4219968/1‑93 (MQ=255)
atttattAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGcattatta > 2:2227230/1‑93 (MQ=255)
tttattAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGcattattat > 1:299810/1‑93 (MQ=255)
tttattAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGcattattat < 2:813132/93‑1 (MQ=255)
tttattAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGcattattat > 1:3581930/1‑93 (MQ=255)
ttattaATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATtata > 2:2253329/1‑93 (MQ=255)
ttattaATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATtata < 2:3212755/93‑1 (MQ=255)
ttattaATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATtata > 2:2069843/1‑93 (MQ=255)
ttattaATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATtata > 1:4391702/1‑93 (MQ=255)
tattaATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATtatat < 2:3912370/93‑1 (MQ=255)
tattaATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATtatat > 2:2746394/1‑93 (MQ=255)
attaATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATtatata > 2:1860586/1‑93 (MQ=255)
ttaATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATAc > 2:1632464/1‑93 (MQ=255)
aTTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAAc > 1:3973751/1‑93 (MQ=255)
ttCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACt > 1:4133410/1‑93 (MQ=255)
ttCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACt > 1:3919416/1‑93 (MQ=255)
ccATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTaa > 2:3874657/1‑93 (MQ=255)
aTTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAaga > 2:1636453/1‑93 (MQ=255)
ttAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAagag < 1:1651004/93‑1 (MQ=255)
aCAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGgcg > 2:307087/1‑93 (MQ=255)
aCAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGgcg > 2:1481486/1‑93 (MQ=255)
cAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAag > 2:416618/1‑87 (MQ=255)
cAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAag < 1:416618/87‑1 (MQ=255)
cAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGgcgc > 2:3004366/1‑93 (MQ=255)
ataatGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCtt > 2:2544849/1‑93 (MQ=255)
ataatGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCtt > 1:2121428/1‑93 (MQ=255)
ataatGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCtt > 1:3725338/1‑93 (MQ=255)
taatGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCttt > 1:174134/1‑93 (MQ=255)
atGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCttttt < 2:279492/93‑1 (MQ=255)
tGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCtttttt > 2:1051087/1‑93 (MQ=255)
tGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCtttttt > 1:3956729/1‑93 (MQ=255)
aaCAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTAt > 2:2387907/1‑93 (MQ=255)
aCAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATc > 2:349304/1‑93 (MQ=255)
aCAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATc > 1:1770504/1‑93 (MQ=255)
cAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCg > 2:597747/1‑93 (MQ=255)
cAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCg > 2:910141/1‑93 (MQ=255)
aaTTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCgg < 1:411065/93‑1 (MQ=255)
aaTTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCgg > 2:2960048/1‑93 (MQ=255)
aaTTATTTATGGGATTTGACTTCTATCGAATAAATAGATATGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCgg > 1:116473/1‑93 (MQ=255)
attattTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGc > 1:3546492/1‑93 (MQ=255)
attattTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGc > 1:1454512/1‑93 (MQ=255)
ttatttatGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCt > 2:136718/1‑93 (MQ=255)
tatttatGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTa > 1:1377277/1‑93 (MQ=255)
atttatGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTAt > 2:4055738/1‑93 (MQ=255)
tttatGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTAtt > 2:2891902/1‑93 (MQ=255)
tttatGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTAtt > 1:2924030/1‑93 (MQ=255)
ttatGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATtc > 2:462808/1‑93 (MQ=255)
tGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATtcatc > 1:2501533/1‑93 (MQ=255)
tGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATtcatc > 2:4265283/1‑93 (MQ=255)
tGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATtcatc < 1:49570/93‑1 (MQ=255)
tGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATAAAACTAAAAGGCGCTTTTTTATCGGCTATtcatc > 2:3731296/1‑93 (MQ=255)
aTTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCa > 1:4495476/1‑93 (MQ=255)
tttGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAg > 1:2581946/1‑93 (MQ=255)
tGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGAt < 1:2641993/93‑1 (MQ=255)
cTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCAt > 2:1302678/1‑93 (MQ=255)
cTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCAt > 2:211492/1‑93 (MQ=255)
ttCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCAtt < 1:4517694/93‑1 (MQ=255)
tCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTg > 1:565081/1‑93 (MQ=255)
tCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTg > 1:94436/1‑93 (MQ=255)
cTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGa > 1:3331807/1‑93 (MQ=255)
tATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGaa > 2:1921792/1‑93 (MQ=255)
tATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGaa > 1:3879802/1‑93 (MQ=255)
tATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGaa > 1:3617141/1‑93 (MQ=255)
tCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGaaaa < 2:1554126/93‑1 (MQ=255)
gAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAAcc > 1:24974/1‑93 (MQ=255)
aataaataGATTTGGTAGATTGGAAAAGTATTATTATATACAACTAAGAGGCGCTTTTTTAGCGGCTATTCATCACCAGATCATTGAAAACCa < 2:4049862/93‑1 (MQ=255)
aataaataGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCa < 2:4402387/93‑1 (MQ=255)
taaataGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAAc > 1:4209626/1‑93 (MQ=255)
taaataGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAAc > 2:4489051/1‑93 (MQ=255)
aaataGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACt > 1:2289921/1‑93 (MQ=255)
aaataGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACt < 1:626887/93‑1 (MQ=255)
aataGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTg > 2:777026/1‑93 (MQ=255)
aataGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTg > 2:4096548/1‑93 (MQ=255)
aataGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTg > 1:3048938/1‑93 (MQ=255)
aataGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTg > 2:1816112/1‑93 (MQ=255)
aataGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTg > 1:4653546/1‑93 (MQ=255)
taGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGa < 2:794035/93‑1 (MQ=255)
aGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGAt < 1:2474228/93‑1 (MQ=255)
gATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATa > 2:3477079/1‑93 (MQ=255)
gATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATa > 2:2174888/1‑93 (MQ=255)
gATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATa > 1:2251240/1‑93 (MQ=255)
tttGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACa > 1:50510/1‑93 (MQ=255)
tttGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACa > 1:1760702/1‑93 (MQ=255)
tGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGa < 2:4273406/93‑1 (MQ=255)
tAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAAc > 1:1197193/1‑93 (MQ=255)
tAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAAc > 1:4068250/1‑93 (MQ=255)
tAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAAc < 1:1212033/93‑1 (MQ=255)
aTTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAAt > 2:2435824/1‑93 (MQ=255)
aTTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAAt > 2:587762/1‑93 (MQ=255)
ttGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATa > 1:3833406/1‑93 (MQ=255)
ttGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATa > 1:2994238/1‑93 (MQ=255)
ttGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATa > 1:1611540/1‑93 (MQ=255)
aaaaGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTa > 2:1442057/1‑93 (MQ=255)
aaaaGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTa > 1:3984846/1‑93 (MQ=255)
aaaGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTAt > 2:2794202/1‑93 (MQ=255)
aaaGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTAt < 1:561133/93‑1 (MQ=255)
aaGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTAtt < 2:3762530/93‑1 (MQ=255)
aaGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTAtt > 1:807974/1‑93 (MQ=255)
|
CCATTATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGTATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATT > NC_000913/3579704‑3579883
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACTCCATTATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGTATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATTAGTT > NC_000913/3579701‑3579887
|
ACTCCATTATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGC > SRR4302535.2349409/1‑94 (MQ=60)
TCCATTATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCAT > SRR4302535.2603531/1‑94 (MQ=60)
CATTATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTA < SRR4302535.2989696/94‑1 (MQ=60)
ATTATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTAT > SRR4302535.2334570/1‑94 (MQ=60)
TATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTA > SRR4302535.4248844/1‑94 (MQ=60)
ATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTAT > SRR4302535.301900/1‑94 (MQ=60)
ATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTAT > SRR4302535.3606774/1‑94 (MQ=60)
TTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATA > SRR4302535.4421751/1‑94 (MQ=60)
TATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATA > SRR4302535.2779153/1‑94 (MQ=60)
AATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAAC > SRR4302535.4000894/1‑94 (MQ=60)
ATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACT > SRR4302535.3946220/1‑94 (MQ=60)
ATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACT > SRR4302535.4161704/1‑94 (MQ=60)
gtggtACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGA < SRR4302535.419537/89‑1 (MQ=60)
CATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGA > SRR4302535.1419158/1‑94 (MQ=60)
CATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGA > SRR4302535.715067/1‑94 (MQ=60)
CATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGA > SRR4302535.4064369/1‑94 (MQ=60)
TTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGG > SRR4302535.3016441/1‑94 (MQ=60)
TTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGG < SRR4302535.1662941/94‑1 (MQ=60)
AATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTT > SRR4302535.3751148/1‑94 (MQ=60)
AATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTT > SRR4302535.2136725/1‑94 (MQ=60)
ATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTT > SRR4302535.175337/1‑94 (MQ=60)
ATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTT > SRR4302535.3983743/1‑94 (MQ=60)
AACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATC > SRR4302535.1783335/1‑94 (MQ=60)
CAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATATGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGG > SRR4302535.117293/1‑94 (MQ=60)
AATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGC > SRR4302535.3571114/1‑94 (MQ=60)
AATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGC < SRR4302535.413951/94‑1 (MQ=60)
AATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGC > SRR4302535.1464922/1‑94 (MQ=60)
TTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTA < SRR4302535.3763226/94‑1 (MQ=60)
TTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTA > SRR4302535.1387106/1‑94 (MQ=60)
ATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATT > SRR4302535.2944649/1‑94 (MQ=60)
ATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATC > SRR4302535.2519574/1‑94 (MQ=60)
ATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATC > SRR4302535.3951967/1‑94 (MQ=60)
TGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCA < SRR4302535.49940/94‑1 (MQ=60)
GATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCA > SRR4302535.4526334/1‑94 (MQ=60)
ATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAG > SRR4302535.2600494/1‑94 (MQ=60)
TGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATC > SRR4302535.4189844/1‑94 (MQ=60)
TGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATC < SRR4302535.2660914/94‑1 (MQ=60)
TTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTG > SRR4302535.569039/1‑94 (MQ=60)
TTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTG < SRR4302535.4548657/94‑1 (MQ=60)
TTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTG > SRR4302535.95110/1‑94 (MQ=60)
TCTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGA > SRR4302535.3354997/1‑94 (MQ=60)
CTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAA > SRR4302535.3642219/1‑94 (MQ=60)
CTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAA < SRR4302535.192674/94‑1 (MQ=60)
CTATCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAA > SRR4302535.3906433/1‑94 (MQ=60)
TCGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAAC < SRR4302535.514867/94‑1 (MQ=60)
CGAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACC > SRR4302535.25167/1‑94 (MQ=60)
GAATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCA > SRR4302535.2522300/1‑94 (MQ=60)
ATAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAAC > SRR4302535.4238436/1‑94 (MQ=60)
TAAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACT > SRR4302535.2306277/1‑94 (MQ=60)
AAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTG > SRR4302535.3070296/1‑94 (MQ=60)
AAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTG < SRR4302535.631252/94‑1 (MQ=60)
AAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTG < SRR4302535.3549709/94‑1 (MQ=60)
AAATAGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTG > SRR4302535.4685051/1‑94 (MQ=60)
AGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATA < SRR4302535.2492074/94‑1 (MQ=60)
AGATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATA > SRR4302535.2267272/1‑94 (MQ=60)
ATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACA > SRR4302535.50883/1‑94 (MQ=60)
ATTTGGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACA > SRR4302535.1773451/1‑94 (MQ=60)
GGTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAA > SRR4302535.4319297/1‑94 (MQ=60)
GTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAAC > SRR4302535.4565389/1‑94 (MQ=60)
GTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAAC > SRR4302535.1205766/1‑94 (MQ=60)
GTAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAAC > SRR4302535.4096094/1‑94 (MQ=60)
TAGATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACA < SRR4302535.1220731/94‑1 (MQ=60)
ATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATA > SRR4302535.1623160/1‑94 (MQ=60)
ATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATA > SRR4302535.3015229/1‑94 (MQ=60)
ATTGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATA > SRR4302535.3859842/1‑94 (MQ=60)
TGGAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAAC < SRR4302535.166353/94‑1 (MQ=60)
GAAAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTA > SRR4302535.4012075/1‑94 (MQ=60)
AAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATT < SRR4302535.565056/94‑1 (MQ=60)
AAAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATT > SRR4302535.813634/1‑94 (MQ=60)
AAGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATTA > SRR4302535.4445697/1‑94 (MQ=60)
AGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATTAG < SRR4302535.2208825/94‑1 (MQ=60)
AGCATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATTAG > SRR4302535.932293/1‑94 (MQ=60)
CATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATTAGTT > SRR4302535.2402641/1‑94 (MQ=60)
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ACTCCATTATTTATTAATTCCATTAACAATAATGAACAATTATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGTATTATTATATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATTAGTT > NC_000913/3579701‑3579887
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
