Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,597,539 |
T→C |
intergenic (‑250/+21) |
b3460 ← / ← rpoH |
LivJ/sigma(32) factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,597,539 | 0 | T | C | 100.0%
| 710.7
/ NA
| 226 | intergenic (‑250/+21) | b3460/rpoH | LivJ/sigma(32) factor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (118/108); total (118/108) |
Only 100 of 236 total aligned reads displayed.
ACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA > NC_000913/3597449‑3597628
|
aCAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCtc > 1:4071029/1‑93 (MQ=255)
cAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGctct < 1:2310327/93‑1 (MQ=255)
caTCTGCGTGGGCATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGCCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCtctc < 2:763324/92‑1 (MQ=255)
aaTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCtctc > 2:2460014/1‑93 (MQ=255)
aaTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCtctc < 1:3163112/93‑1 (MQ=255)
aaTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGAATCTCATCCAGGGCtctc > 1:2434652/1‑93 (MQ=255)
aTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGctctct > 1:638600/1‑93 (MQ=255)
aTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGctctct > 2:797414/1‑93 (MQ=255)
aTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGctctct > 1:3654986/1‑93 (MQ=255)
gggggTGGGTATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGc < 1:4494286/89‑1 (MQ=255)
cTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGc > 2:3665669/1‑93 (MQ=255)
cTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGc < 1:4283565/93‑1 (MQ=255)
gCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCtt > 1:3433973/1‑93 (MQ=255)
gtggtgATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTaa < 2:3905321/93‑1 (MQ=255)
gTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTaa > 1:1003430/1‑93 (MQ=255)
gTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTaa < 1:2761630/93‑1 (MQ=255)
gTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTaa < 1:1617339/93‑1 (MQ=255)
tGGGGATTGGCGTTTTGCCGGAGGTGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAt < 1:1741052/93‑1 (MQ=255)
tGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAt > 2:480351/1‑93 (MQ=255)
tGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAt < 2:3297488/93‑1 (MQ=255)
tGGGGATTGGCGTTCTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAt < 2:4080421/93‑1 (MQ=255)
ggggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATGCAGGGCTCTCTGCTTAATa < 2:4525514/93‑1 (MQ=255)
ggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGc > 1:4595475/1‑93 (MQ=255)
gATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCg > 2:2268248/1‑93 (MQ=255)
aTTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCgg > 2:2041283/1‑93 (MQ=255)
ttGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGa > 2:1627936/1‑93 (MQ=255)
ggCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGaaa < 2:697761/93‑1 (MQ=255)
gTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCCGGGCTCTCTGCTTAATAGCGGAGATTa > 1:1172245/1‑93 (MQ=255)
gTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTa < 1:2232358/93‑1 (MQ=255)
ttttGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCTGAAATTAc > 1:4417631/1‑93 (MQ=255)
ttttGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAGAGTAc > 2:2114162/1‑93 (MQ=255)
ttttGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAc < 1:3192387/93‑1 (MQ=255)
ttttGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAc < 1:847573/93‑1 (MQ=255)
ttttGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAc < 1:2017772/93‑1 (MQ=255)
tGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCt < 1:4012044/93‑1 (MQ=255)
ccGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACACCGGACTCTCATCCAGGGATCTCTGCTTAATAGCGGAAATTACGCTTc > 1:2742425/1‑93 (MQ=255)
cGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCa < 1:4189523/93‑1 (MQ=255)
gAGGGGAAATTGATTATTACAGAGTACCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAt < 1:3973145/93‑1 (MQ=255)
gAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAt > 1:2009124/1‑93 (MQ=255)
gAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAt < 1:2493560/93‑1 (MQ=255)
aGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATg < 2:4142729/93‑1 (MQ=255)
ggggAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATgg > 2:1038298/1‑93 (MQ=255)
ggggAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATgg > 1:835962/1‑93 (MQ=255)
ggggAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATgg > 2:28574/1‑93 (MQ=255)
ggggAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATgg > 2:3004883/1‑93 (MQ=255)
gggAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgc < 1:1336475/93‑1 (MQ=255)
aaaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagc < 2:4643364/93‑1 (MQ=255)
aaaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagc > 1:2172519/1‑93 (MQ=255)
aaaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagc > 1:2856191/1‑93 (MQ=255)
aaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagca > 2:1419929/1‑93 (MQ=255)
aaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagca > 2:671053/1‑93 (MQ=255)
aaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagca > 2:1663224/1‑93 (MQ=255)
aaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagca > 1:471376/1‑93 (MQ=255)
gATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCa > 1:368043/1‑93 (MQ=255)
gATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCa > 2:1303911/1‑93 (MQ=255)
attattACAGAGGCCCAAAAACCAAAACCCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCaa < 2:1801950/93‑1 (MQ=255)
attattACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCaa > 2:1837330/1‑93 (MQ=255)
ttattaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAt > 1:3109230/1‑93 (MQ=255)
ttattaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAt > 2:539744/1‑93 (MQ=255)
ttattaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAt > 1:586923/1‑93 (MQ=255)
tattaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAtt < 1:1783780/93‑1 (MQ=255)
attaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAttt > 1:3254822/1‑93 (MQ=255)
attaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAttt < 1:686756/93‑1 (MQ=255)
attaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAttt > 2:1121883/1‑93 (MQ=255)
taCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAttttt > 1:3561158/1‑93 (MQ=255)
cAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTc > 2:1208389/1‑93 (MQ=255)
agagGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCa < 2:3173473/93‑1 (MQ=255)
gagGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAt > 2:398207/1‑93 (MQ=255)
gagGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAt > 1:715241/1‑93 (MQ=255)
agGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATc < 1:2605080/93‑1 (MQ=255)
agGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATc < 2:4197861/93‑1 (MQ=255)
ggCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATcg < 1:3908934/93‑1 (MQ=255)
gCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATcgc < 1:2978542/93‑1 (MQ=255)
gCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATcgc > 2:3560216/1‑93 (MQ=255)
ccAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGt < 1:3841439/93‑1 (MQ=255)
cAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGtt > 2:144635/1‑93 (MQ=255)
aaaaaaCAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTc > 1:93916/1‑93 (MQ=255)
aaaacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCtt > 2:2322123/1‑93 (MQ=255)
aaaacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCtt < 1:1901637/93‑1 (MQ=255)
aaacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCttt < 2:2739306/93‑1 (MQ=255)
aacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCtttt < 2:4282728/93‑1 (MQ=255)
acaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTc > 1:1949038/1‑93 (MQ=255)
caaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTcc < 2:2079033/93‑1 (MQ=255)
caaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTcc < 1:580742/93‑1 (MQ=255)
aaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAg > 1:1364557/1‑93 (MQ=255)
aaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGc > 1:802578/1‑93 (MQ=255)
aaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGc < 2:1875051/93‑1 (MQ=255)
aaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGc < 2:2924370/93‑1 (MQ=255)
aacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCt < 2:427652/93‑1 (MQ=255)
ccGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCg > 1:1823529/1‑93 (MQ=255)
ggACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTGTTTCATCGCGTTCTTTTCCAGATGGCgca > 2:1564603/1‑91 (MQ=255)
aCTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTaca < 2:3842651/93‑1 (MQ=255)
aCTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTaca < 1:1482037/93‑1 (MQ=255)
tCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAg > 2:877833/1‑93 (MQ=255)
tCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAg < 2:127937/93‑1 (MQ=255)
ccAGGACTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGc < 2:3336945/93‑1 (MQ=255)
cAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCg > 2:2711510/1‑93 (MQ=255)
cAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCg < 1:1143802/93‑1 (MQ=255)
aGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCgg > 1:3838669/1‑93 (MQ=255)
gggCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGa > 1:4542474/1‑93 (MQ=255)
|
ACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA > NC_000913/3597449‑3597628
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG > NC_000913/3597446‑3597632
|
TTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGC < SRR4302535.3424048/94‑1 (MQ=60)
TAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCT < SRR4302535.3051266/94‑1 (MQ=60)
TAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCT < SRR4302535.3741071/94‑1 (MQ=60)
AACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTC > SRR4302535.4098887/1‑94 (MQ=60)
AACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTC > SRR4302535.4218/1‑94 (MQ=60)
AACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTC > SRR4302535.394754/1‑94 (MQ=60)
AACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACACCGGACTCTCATCCAGGGCTC > SRR4302535.562249/1‑94 (MQ=60)
ACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCT < SRR4302535.913701/94‑1 (MQ=60)
CAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTC < SRR4302535.2326863/94‑1 (MQ=60)
CAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTC > SRR4302535.1544604/1‑94 (MQ=60)
CAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTC > SRR4302535.3771301/1‑94 (MQ=60)
CAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGAATCTCATCCAGGGCTCTC > SRR4302535.2452190/1‑94 (MQ=60)
AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT > SRR4302535.3680287/1‑94 (MQ=60)
AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT > SRR4302535.643062/1‑94 (MQ=60)
AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT > SRR4302535.4448599/1‑94 (MQ=60)
AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT < SRR4302535.3185049/94‑1 (MQ=60)
AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT < SRR4302535.700178/94‑1 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG > SRR4302535.3360221/1‑94 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG > SRR4302535.797896/1‑94 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG > SRR4302535.1466012/1‑94 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG > SRR4302535.2189390/1‑94 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG > SRR4302535.3693929/1‑94 (MQ=60)
ggggGTGGGTATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCT < SRR4302535.4525136/90‑1 (MQ=60)
CTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCT > SRR4302535.3479045/1‑94 (MQ=60)
CTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCT < SRR4302535.4312871/94‑1 (MQ=60)
TGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTT > SRR4302535.3457839/1‑94 (MQ=60)
CGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAA > SRR4302535.1010554/1‑94 (MQ=60)
GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT < SRR4302535.1628991/94‑1 (MQ=60)
GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT > SRR4302535.2027406/1‑94 (MQ=60)
GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT < SRR4302535.2781309/94‑1 (MQ=60)
TGGGGATTGGCGTTTTGCCGGAGGTGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATA < SRR4302535.1753635/94‑1 (MQ=60)
TGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATA < SRR4302535.4040753/94‑1 (MQ=60)
GGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAG < SRR4302535.3150180/94‑1 (MQ=60)
GGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAG < SRR4302535.4549587/94‑1 (MQ=60)
GGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAG < SRR4302535.1174764/94‑1 (MQ=60)
GGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAG < SRR4302535.676568/94‑1 (MQ=60)
GGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGC > SRR4302535.4626743/1‑94 (MQ=60)
GGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCG < SRR4302535.3876997/94‑1 (MQ=60)
GGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCACAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCG < SRR4302535.1709854/94‑1 (MQ=60)
GATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGG < SRR4302535.4620066/94‑1 (MQ=60)
AGCGTTTTGCTGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAAT < SRR4302535.2957379/94‑1 (MQ=60)
GCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATT < SRR4302535.4353524/94‑1 (MQ=60)
GCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATT < SRR4302535.570218/94‑1 (MQ=60)
GCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATT > SRR4302535.2998629/1‑94 (MQ=60)
CGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCCGGGCTCTCTGCTTAATAGCGGAGATTA > SRR4302535.1180616/1‑94 (MQ=60)
GTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCTGAAATTAC > SRR4302535.4447875/1‑94 (MQ=60)
GTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAC < SRR4302535.2248231/94‑1 (MQ=60)
TTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACG < SRR4302535.853534/94‑1 (MQ=60)
TTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACG < SRR4302535.3214471/94‑1 (MQ=60)
TTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACG < SRR4302535.2128900/94‑1 (MQ=60)
TTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACG < SRR4302535.2032308/94‑1 (MQ=60)
TGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTT < SRR4302535.4039491/94‑1 (MQ=60)
GCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACACCGGACTCTCATCCAGGGATCTCTGCTTAATAGCGGAAATTACGCTTC > SRR4302535.2761971/1‑94 (MQ=60)
CGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAA < SRR4302535.4218199/94‑1 (MQ=60)
GGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAT > SRR4302535.2023592/1‑94 (MQ=60)
GGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAT > SRR4302535.586047/1‑94 (MQ=60)
GAGGGGAAATTGATTATTACAGAGTACCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATG < SRR4302535.4000285/94‑1 (MQ=60)
GAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATG < SRR4302535.2511555/94‑1 (MQ=60)
AGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGG > SRR4302535.841825/1‑94 (MQ=60)
GGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGC < SRR4302535.661787/94‑1 (MQ=60)
GGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGC < SRR4302535.828174/94‑1 (MQ=60)
GGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCA < SRR4302535.2774528/94‑1 (MQ=60)
GGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCA < SRR4302535.1346010/94‑1 (MQ=60)
GGAAATTTATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAG < SRR4302535.1954899/94‑1 (MQ=60)
GAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGC > SRR4302535.2188063/1‑94 (MQ=60)
GAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGC > SRR4302535.2876429/1‑94 (MQ=60)
AAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCA > SRR4302535.178796/1‑94 (MQ=60)
AAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCA > SRR4302535.474675/1‑94 (MQ=60)
AATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCAC > SRR4302535.3921140/1‑94 (MQ=60)
ATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACG > SRR4302535.258286/1‑94 (MQ=60)
TGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCA > SRR4302535.370583/1‑94 (MQ=60)
TGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCA > SRR4302535.91288/1‑94 (MQ=60)
GATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAA > SRR4302535.2632876/1‑94 (MQ=60)
ATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAT > SRR4302535.3130877/1‑94 (MQ=60)
ATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAT > SRR4302535.591034/1‑94 (MQ=60)
TTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATT < SRR4302535.4557186/94‑1 (MQ=60)
TATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTT > SRR4302535.3277435/1‑94 (MQ=60)
TATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTT < SRR4302535.1796689/94‑1 (MQ=60)
TATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTT < SRR4302535.4233887/94‑1 (MQ=60)
ATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTT < SRR4302535.691568/94‑1 (MQ=60)
TTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTT > SRR4302535.3585851/1‑94 (MQ=60)
TTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTT < SRR4302535.3227288/94‑1 (MQ=60)
ACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTC < SRR4302535.2348476/94‑1 (MQ=60)
AGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAT > SRR4302535.720261/1‑94 (MQ=60)
AGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAT < SRR4302535.1970092/94‑1 (MQ=60)
AGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAT > SRR4302535.2716455/1‑94 (MQ=60)
AGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCG < SRR4302535.2623779/94‑1 (MQ=60)
GGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGC < SRR4302535.3935706/94‑1 (MQ=60)
GCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCG < SRR4302535.2999441/94‑1 (MQ=60)
CCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGT > SRR4302535.743002/1‑94 (MQ=60)
CCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGT > SRR4302535.3704961/1‑94 (MQ=60)
CCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGT > SRR4302535.3308668/1‑94 (MQ=60)
CCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCAT > SRR4302535.1348176/1‑94 (MQ=60)
CCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTT < SRR4302535.3867906/94‑1 (MQ=60)
CAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTC > SRR4302535.94583/1‑94 (MQ=60)
AAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTT < SRR4302535.1915325/94‑1 (MQ=60)
AAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTT < SRR4302535.3138820/94‑1 (MQ=60)
AAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTT < SRR4302535.3631489/94‑1 (MQ=60)
AAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTT < SRR4302535.2468227/94‑1 (MQ=60)
AACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTC > SRR4302535.1963067/1‑94 (MQ=60)
ACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCC > SRR4302535.1522124/1‑94 (MQ=60)
ACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCC < SRR4302535.4701347/94‑1 (MQ=60)
CAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCA < SRR4302535.584824/94‑1 (MQ=60)
AAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGACATTACGCTTCAATGGCATCACGCAATTTTTTCATCGCGTTCTTTTCCAG > SRR4302535.1686001/1‑94 (MQ=60)
AAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAG > SRR4302535.849501/1‑94 (MQ=60)
AAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAG > SRR4302535.1374315/1‑94 (MQ=60)
AAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGC > SRR4302535.808216/1‑94 (MQ=60)
AAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCT < SRR4302535.1836042/94‑1 (MQ=60)
AAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCT > SRR4302535.4223455/1‑94 (MQ=60)
ACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGG < SRR4302535.3208866/94‑1 (MQ=60)
CCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGC > SRR4302535.4063417/1‑94 (MQ=60)
CCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCG > SRR4302535.1258887/1‑94 (MQ=60)
CCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCG > SRR4302535.1836697/1‑94 (MQ=60)
CGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTA < SRR4302535.2162713/94‑1 (MQ=60)
GACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACA > SRR4302535.1819490/1‑94 (MQ=60)
ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC < SRR4302535.1492636/94‑1 (MQ=60)
ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC < SRR4302535.3866074/94‑1 (MQ=60)
ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC < SRR4302535.598174/94‑1 (MQ=60)
ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC > SRR4302535.1874005/1‑94 (MQ=60)
CTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACG > SRR4302535.301163/1‑94 (MQ=60)
TCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTC < SRR4302535.4027825/94‑1 (MQ=60)
CATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCA < SRR4302535.1977852/94‑1 (MQ=60)
CCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCG > SRR4302535.1342597/1‑94 (MQ=60)
CAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGG < SRR4302535.2840520/94‑1 (MQ=60)
CAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGG > SRR4302535.3865129/1‑94 (MQ=60)
CAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGG < SRR4302535.1151959/94‑1 (MQ=60)
AGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA > SRR4302535.2267554/1‑94 (MQ=60)
AGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA > SRR4302535.2444387/1‑94 (MQ=60)
AGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA > SRR4302535.4573543/1‑94 (MQ=60)
AGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA > SRR4302535.107803/1‑94 (MQ=60)
GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC > SRR4302535.16431/1‑94 (MQ=60)
CTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG > SRR4302535.631162/1‑94 (MQ=60)
CTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG < SRR4302535.1682142/94‑1 (MQ=60)
CTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG > SRR4302535.2394665/1‑94 (MQ=60)
CTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG < SRR4302535.3442528/94‑1 (MQ=60)
|
TTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG > NC_000913/3597446‑3597632
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
