Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,604,090	T→C	T3T (ACT→ACC)	zntA →	zinc‑transporting ATPase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,604,090	0	T	C	99.6%	804.1 / NA	256	T3T (ACT→ACC)	zntA	zinc‑transporting ATPase
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (160/95); minor base G (0/1); total (160/96)
Fisher's exact test for biased strand distribution p-value = 3.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 266 total aligned reads displayed.

TATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGACGG  >  NC_000913/3604000‑3604179

tATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGAcccc                                                                                         <  1:2601980/93‑1 (MQ=255)

tATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGAcccc                                                                                         <  2:2815875/93‑1 (MQ=255)

 aTCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCt                                                                                        <  1:641561/93‑1 (MQ=255)

   ctctGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGa                                                                                      <  1:1782761/93‑1 (MQ=255)

      tGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACaa                                                                                   >  2:24272/1‑93 (MQ=255)

      tGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACaa                                                                                   >  2:2857737/1‑93 (MQ=255)

       gATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAAt                                                                                  <  1:3967142/93‑1 (MQ=255)

       gATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAAt                                                                                  >  2:4244433/1‑93 (MQ=255)

        aTAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATc                                                                                 >  2:4424926/1‑93 (MQ=255)

         tAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCa                                                                                <  2:3511692/93‑1 (MQ=255)

         tAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCa                                                                                >  1:4389804/1‑93 (MQ=255)

          aaaaCTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCAc                                                                               <  1:3029082/93‑1 (MQ=255)

           aaaCTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACg                                                                              >  1:1666120/1‑93 (MQ=255)

           aaaCTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACg                                                                              >  2:4530326/1‑93 (MQ=255)

             aCTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGc                                                                            >  2:3159377/1‑93 (MQ=255)

              cTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCa                                                                           >  1:940258/1‑93 (MQ=255)

               ttGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCaa                                                                          <  1:2134609/93‑1 (MQ=255)

               ttGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCaa                                                                          <  1:2471391/93‑1 (MQ=255)

               ttGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCaa                                                                          <  2:648404/93‑1 (MQ=255)

               ttGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACCGCaa                                                                          >  2:2117974/1‑93 (MQ=255)

                tGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAg                                                                         >  1:76497/1‑93 (MQ=255)

                   ctctGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCATGaaa                                                                      >  1:2274034/1‑93 (MQ=255)

                   ctctGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGaaa                                                                      <  1:2684630/93‑1 (MQ=255)

                    tctGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAg                                                                     <  2:4128844/93‑1 (MQ=255)

                        gAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGcccc                                                                 >  2:3552033/1‑93 (MQ=255)

                          gTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTc                                                               >  1:1614241/1‑93 (MQ=255)

                            cGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAGCCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCaa                                                             <  1:1972854/93‑1 (MQ=255)

                             gACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAAt                                                            <  2:3867432/93‑1 (MQ=255)

                               cTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACGCCTGACAATCACGGCAAGAAAGCCCCTCAAttt                                                          <  2:762381/93‑1 (MQ=255)

                               cTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAAttt                                                          >  2:2097039/1‑93 (MQ=255)

                                tCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTtg                                                         >  1:3379356/1‑93 (MQ=255)

                                tCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTtg                                                         >  2:1476662/1‑93 (MQ=255)

                                 ccAGAGTGTATCCTTCGGGTAATGAGAAAAAACTTAACCGGAGGATTCCATGTCGCCCCCTGACAATCACGGCGAGAAAGCCCCTCAATTtgc                                                        <  2:4546386/93‑1 (MQ=255)

                                  cAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTtgct                                                       >  2:1649198/1‑93 (MQ=255)

                                   agagTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTtgctg                                                      >  2:1284889/1‑93 (MQ=255)

                                   agagTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTtgctg                                                      >  1:561261/1‑93 (MQ=255)

                                    gagTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTtgctgc                                                     >  2:1570019/1‑93 (MQ=255)

                                      gtgtATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGt                                                   <  2:1309313/93‑1 (MQ=255)

                                       tgtATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGtt                                                  <  2:4052409/93‑1 (MQ=255)

                                       tgtATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGtt                                                  <  1:1852094/93‑1 (MQ=255)

                                        gtATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTc                                                 <  1:350247/93‑1 (MQ=255)

                                          aTCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGGCCCTCAATTTGCTGTGTTCaa                                               >  2:3935555/1‑93 (MQ=255)

                                          aTCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCaa                                               >  1:2404642/1‑93 (MQ=255)

                                           tCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGCGGACCCCTGCCATTCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCaac                                              >  1:2811266/1‑92 (MQ=255)

                                            ccTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAAc                                             <  2:1414987/93‑1 (MQ=255)

                                            ccTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAAc                                             <  1:3819273/93‑1 (MQ=255)

                                             cTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGCCCCCTGAAAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAAcc                                            <  2:3371142/93‑1 (MQ=255)

                                             cTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAAcc                                            <  1:4243947/93‑1 (MQ=255)

                                             cTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAAcc                                            >  2:4660524/1‑93 (MQ=255)

                                               tCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGc                                          <  2:4320847/93‑1 (MQ=255)

                                               tCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGACCCTCAATTTGCTGCGTTCAAACCGc                                          >  1:2015497/1‑93 (MQ=255)

                                                cGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCt                                         >  2:1751041/1‑93 (MQ=255)

                                                 ggTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTa                                        >  2:1939948/1‑93 (MQ=255)

                                                 ggTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACAGCTa                                        >  1:1639274/1‑93 (MQ=255)

                                                  gTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTaa                                       >  1:4556942/1‑93 (MQ=255)

                                                  gTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTaa                                       <  2:2049901/93‑1 (MQ=255)

                                                   ttAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAAc                                      >  1:3596730/1‑93 (MQ=255)

                                                    tAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAAcc                                     >  2:3625961/1‑93 (MQ=255)

                                                     aaTGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCa                                    >  1:4126499/1‑93 (MQ=255)

                                                      aTGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCAc                                   >  1:3318955/1‑93 (MQ=255)

                                                        gagaAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACgg                                 >  1:11031/1‑93 (MQ=255)

                                                        gagaAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACgg                                 >  1:292335/1‑93 (MQ=255)

                                                         agaAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGt                                >  2:266716/1‑93 (MQ=255)

                                                          gaAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTa                               >  1:2436284/1‑93 (MQ=255)

                                                          gaAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTa                               >  1:2534573/1‑93 (MQ=255)

                                                          gaAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTa                               <  1:3230173/93‑1 (MQ=255)

                                                          gaAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTa                               >  2:2252606/1‑93 (MQ=255)

                                                           aaaaaaCTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTAc                              >  2:1873105/1‑93 (MQ=255)

                                                            aaaaaCTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACa                             >  2:3176830/1‑93 (MQ=255)

                                                            aaaaaCTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACa                             >  2:376213/1‑93 (MQ=255)

                                                             aaaaCTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAg                            >  2:4175365/1‑93 (MQ=255)

                                                               aaCTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGaa                          >  1:516126/1‑93 (MQ=255)

                                                               aaCTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGaa                          <  2:2338430/93‑1 (MQ=255)

                                                               aaCTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGaa                          <  1:2187242/93‑1 (MQ=255)

                                                               aaCTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGaa                          >  2:4006087/1‑93 (MQ=255)

                                                                 cTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGGACAGAACg                        >  2:2001400/1‑93 (MQ=255)

                                                                    acccGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCa                     <  2:2623525/91‑1 (MQ=255)

                                                                     aCCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCaa                    >  1:1008155/1‑93 (MQ=255)

                                                                      ccGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAAc                   >  2:1814313/1‑93 (MQ=255)

                                                                      ccGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAAc                   >  2:1194199/1‑93 (MQ=255)

                                                                      ccGCAGGATGACATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAAc                   <  1:1694573/93‑1 (MQ=255)

                                                                          aggaTGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACt               <  2:1712003/93‑1 (MQ=255)

                                                                           ggaTGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTg              <  2:216163/93‑1 (MQ=255)

                                                                            gaTGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGt             >  1:1494455/1‑93 (MQ=255)

                                                                            gaTGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGt             <  2:3654239/93‑1 (MQ=255)

                                                                             aTGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGtt            >  1:4351893/1‑93 (MQ=255)

                                                                             aTGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGtt            <  1:2291124/93‑1 (MQ=255)

                                                                             aTGCAATGTCGCCCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGtt            <  1:824386/93‑1 (MQ=255)

                                                                               tccATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTtgc          <  1:1390695/92‑1 (MQ=255)

                                                                               gCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTtgc          <  1:3707365/93‑1 (MQ=255)

                                                                               gCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTtgc          >  1:1583467/1‑93 (MQ=255)

                                                                               gCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTtgc          >  1:2324038/1‑93 (MQ=255)

                                                                                  aTGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTtgctgc       >  1:3435015/1‑93 (MQ=255)

                                                                                  aTGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTtgctgc       <  2:2321374/93‑1 (MQ=255)

                                                                                   tGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCg      >  1:3179705/1‑93 (MQ=255)

                                                                                   tGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCg      >  1:4525484/1‑93 (MQ=255)

                                                                                    gTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGa     >  1:3145273/1‑93 (MQ=255)

                                                                                     tCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGAc    <  2:3244818/93‑1 (MQ=255)

                                                                                     tCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGAc    <  1:4175762/93‑1 (MQ=255)

                                                                                     tCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGAc    <  2:984966/93‑1 (MQ=255)

TATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGACGG  >  NC_000913/3604000‑3604179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGTATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGACGGCGCA  >  NC_000913/3603998‑3604183

TGTATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCC                                                                                              >  SRR4302535.817704/1‑94 (MQ=60)

TGTATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCC                                                                                              >  SRR4302535.3117401/1‑94 (MQ=60)

  TATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCT                                                                                            >  SRR4302535.815321/1‑94 (MQ=60)

  TATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCT                                                                                            <  SRR4302535.2620660/94‑1 (MQ=60)

  TATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCT                                                                                            >  SRR4302535.152140/1‑94 (MQ=60)

  TATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCT                                                                                            <  SRR4302535.3218742/94‑1 (MQ=60)

   ATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTG                                                                                           >  SRR4302535.2017449/1‑94 (MQ=60)

   ATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTG                                                                                           <  SRR4302535.646041/94‑1 (MQ=60)

   ATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTG                                                                                           >  SRR4302535.3387335/1‑94 (MQ=60)

   ATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTG                                                                                           >  SRR4302535.424628/1‑94 (MQ=60)

    TCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGA                                                                                          >  SRR4302535.4335732/1‑94 (MQ=60)

     CTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGAC                                                                                         >  SRR4302535.4129154/1‑94 (MQ=60)

     CTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGAC                                                                                         <  SRR4302535.1795664/94‑1 (MQ=60)

     CTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGAC                                                                                         <  SRR4302535.4343470/94‑1 (MQ=60)

     CTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGAC                                                                                         <  SRR4302535.4587417/94‑1 (MQ=60)

      TCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACA                                                                                        >  SRR4302535.586348/1‑94 (MQ=60)

        TGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAAT                                                                                      >  SRR4302535.1623808/1‑94 (MQ=60)

         GATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATC                                                                                     <  SRR4302535.3994240/94‑1 (MQ=60)

         GATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATC                                                                                     >  SRR4302535.3736883/1‑94 (MQ=60)

         GATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATC                                                                                     >  SRR4302535.2643513/1‑94 (MQ=60)

          ATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCA                                                                                    >  SRR4302535.4419838/1‑94 (MQ=60)

          ATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCA                                                                                    <  SRR4302535.17295/94‑1 (MQ=60)

           TAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCAC                                                                                   >  SRR4302535.3641624/1‑94 (MQ=60)

            AAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACG                                                                                  >  SRR4302535.1678174/1‑94 (MQ=60)

            AAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACG                                                                                  <  SRR4302535.3050285/94‑1 (MQ=60)

             AAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGG                                                                                 <  SRR4302535.2297414/94‑1 (MQ=60)

               ACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCA                                                                               >  SRR4302535.946914/1‑94 (MQ=60)

               ACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCA                                                                               >  SRR4302535.2313802/1‑94 (MQ=60)

                 TTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAG                                                                             <  SRR4302535.2489206/94‑1 (MQ=60)

                 TTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAG                                                                             >  SRR4302535.77051/1‑94 (MQ=60)

                 TTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAG                                                                             <  SRR4302535.1066097/94‑1 (MQ=60)

                 TTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAG                                                                             <  SRR4302535.2149990/94‑1 (MQ=60)

                   GACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAA                                                                           >  SRR4302535.2660897/1‑94 (MQ=60)

                    ACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCATGAAA                                                                          >  SRR4302535.2290264/1‑94 (MQ=60)

                    ACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAA                                                                          <  SRR4302535.1237997/94‑1 (MQ=60)

                    ACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAA                                                                          >  SRR4302535.2403193/1‑94 (MQ=60)

                     CTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAG                                                                         <  SRR4302535.2703825/94‑1 (MQ=60)

                       CTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCC                                                                       <  SRR4302535.3404038/94‑1 (MQ=60)

                         GGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCC                                                                     >  SRR4302535.4648353/1‑94 (MQ=60)

                         GGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCC                                                                     >  SRR4302535.3883626/1‑94 (MQ=60)

                          GAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCT                                                                    >  SRR4302535.2121514/1‑94 (MQ=60)

                           AGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTC                                                                   >  SRR4302535.1625875/1‑94 (MQ=60)

                           AGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTC                                                                   >  SRR4302535.526649/1‑94 (MQ=60)

                           AGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTC                                                                   <  SRR4302535.1250757/94‑1 (MQ=60)

                              CGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAGCCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAAT                                                                <  SRR4302535.1987061/94‑1 (MQ=60)

                              CGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAAT                                                                >  SRR4302535.166673/1‑94 (MQ=60)

                              CGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAAT                                                                <  SRR4302535.2753474/94‑1 (MQ=60)

                               GACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATT                                                               <  SRR4302535.3201648/94‑1 (MQ=60)

                                ACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTT                                                              >  SRR4302535.3992820/1‑94 (MQ=60)

                                ACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTT                                                              <  SRR4302535.93912/94‑1 (MQ=60)

                                 CTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGCCCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTG                                                             <  SRR4302535.1634883/94‑1 (MQ=60)

                                 CTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTG                                                             >  SRR4302535.3402852/1‑94 (MQ=60)

                                 CTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTG                                                             >  SRR4302535.2485176/1‑94 (MQ=60)

                                 CTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATCTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTG                                                             >  SRR4302535.2423471/1‑94 (MQ=60)

                                    CAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTG                                                          >  SRR4302535.1907543/1‑94 (MQ=60)

                                    CAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTG                                                          >  SRR4302535.565185/1‑94 (MQ=60)

                                    CAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTG                                                          <  SRR4302535.3498746/94‑1 (MQ=60)

                                    CAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTG                                                          >  SRR4302535.1814258/1‑94 (MQ=60)

                                         TGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTC                                                     <  SRR4302535.525814/94‑1 (MQ=60)

                                         TGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTC                                                     <  SRR4302535.1865439/94‑1 (MQ=60)

                                         TGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTC                                                     >  SRR4302535.2842467/1‑94 (MQ=60)

                                         TGTATCCTCCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTC                                                     <  SRR4302535.1537807/94‑1 (MQ=60)

                                          GTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCA                                                    <  SRR4302535.352661/94‑1 (MQ=60)

                                           TATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAA                                                   >  SRR4302535.2421944/1‑94 (MQ=60)

                                            ATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGCGGACCCCTGCCATTCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAC                                                  >  SRR4302535.2831250/1‑94 (MQ=60)

                                             TCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAAC                                                 <  SRR4302535.3299104/94‑1 (MQ=60)

                                             TCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAAC                                                 <  SRR4302535.753532/94‑1 (MQ=60)

                                              CCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACC                                                <  SRR4302535.3845628/94‑1 (MQ=60)

                                              CCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACC                                                >  SRR4302535.863173/1‑94 (MQ=60)

                                              CCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACC                                                <  SRR4302535.2245836/94‑1 (MQ=60)

                                               CTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCG                                               >  SRR4302535.2176682/1‑94 (MQ=60)

                                               CTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCG                                               <  SRR4302535.4272996/94‑1 (MQ=60)

                                                TTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGACCCTCAATTTGCTGCGTTCAAACCGC                                              >  SRR4302535.2030019/1‑94 (MQ=60)

                                                 TCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCT                                             <  SRR4302535.3112649/94‑1 (MQ=60)

                                                  CGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTA                                            <  SRR4302535.2463785/94‑1 (MQ=60)

                                                  CGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACAGCTA                                            >  SRR4302535.1651126/1‑94 (MQ=60)

                                                  CGGTTAATGAGAAAAAACGTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTA                                            <  SRR4302535.1703637/94‑1 (MQ=60)

                                                   GGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAC                                           >  SRR4302535.2121177/1‑94 (MQ=60)

                                                   GGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAA                                           >  SRR4302535.2166640/1‑94 (MQ=60)

                                                   GGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAA                                           >  SRR4302535.4588060/1‑94 (MQ=60)

                                                    GTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAAC                                          <  SRR4302535.2871338/94‑1 (MQ=60)

                                                    GTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAAC                                          >  SRR4302535.4176645/1‑94 (MQ=60)

                                                    GTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAAC                                          >  SRR4302535.3621690/1‑94 (MQ=60)

                                                     TTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACC                                         >  SRR4302535.3242290/1‑94 (MQ=60)

                                                     TTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACC                                         <  SRR4302535.3690665/94‑1 (MQ=60)

                                                     TTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACC                                         <  SRR4302535.2433210/94‑1 (MQ=60)

                                                      TAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCA                                        >  SRR4302535.4154737/1‑94 (MQ=60)

                                                       AATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCAC                                       >  SRR4302535.3342047/1‑94 (MQ=60)

                                                        ATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACG                                      >  SRR4302535.1418334/1‑94 (MQ=60)

                                                         TGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGG                                     >  SRR4302535.11116/1‑94 (MQ=60)

                                                         TGAGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGG                                     >  SRR4302535.294380/1‑94 (MQ=60)

                                                           AGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTA                                   >  SRR4302535.2552831/1‑94 (MQ=60)

                                                           AGAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTA                                   >  SRR4302535.2453841/1‑94 (MQ=60)

                                                            GAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTAC                                  <  SRR4302535.3252566/94‑1 (MQ=60)

                                                            GAAAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTAC                                  >  SRR4302535.3581294/1‑94 (MQ=60)

                                                              AAAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAG                                <  SRR4302535.4436259/94‑1 (MQ=60)

                                                               AAAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGA                               >  SRR4302535.2588099/1‑94 (MQ=60)

                                                                AAACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAA                              >  SRR4302535.519734/1‑94 (MQ=60)

                                                                 AACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAAC                             <  SRR4302535.814354/94‑1 (MQ=60)

                                                                 AACTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAAC                             <  SRR4302535.2202823/94‑1 (MQ=60)

                                                                 AACTTAACCGGAGGATGCCATGGCGGCCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAAC                             <  SRR4302535.4038155/94‑1 (MQ=60)

                                                                   CTTAACCGGAGGATGCCCTGTAGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGAACAGCACGC                           >  SRR4302535.642935/1‑94 (MQ=60)

                                                                   CTTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGC                           >  SRR4302535.1659000/1‑94 (MQ=60)

                                                                    TTAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCC                          <  SRR4302535.2972928/94‑1 (MQ=60)

                                                                     TAACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCA                         >  SRR4302535.1621809/1‑94 (MQ=60)

                                                                      AACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAA                        >  SRR4302535.1015318/1‑94 (MQ=60)

                                                                       ACCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAAC                       >  SRR4302535.3435759/1‑94 (MQ=60)

                                                                        CCGGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACG                      >  SRR4302535.4582851/1‑94 (MQ=60)

                                                                        CCGCAGGATGACATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACG                      <  SRR4302535.1706826/94‑1 (MQ=60)

                                                                          GGAGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGAC                    >  SRR4302535.1680857/1‑94 (MQ=60)

                                                                           GAGGATGCCATGTAGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACT                   >  SRR4302535.2550656/1‑94 (MQ=60)

                                                                            AGGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTG                  >  SRR4302535.3370572/1‑94 (MQ=60)

                                                                             GGATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGT                 >  SRR4302535.1505198/1‑94 (MQ=60)

                                                                              GATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTT                >  SRR4302535.4381672/1‑94 (MQ=60)

                                                                               ATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTG               >  SRR4302535.4419692/1‑94 (MQ=60)

                                                                               ATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTG               >  SRR4302535.2312091/1‑94 (MQ=60)

                                                                               ATGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTG               <  SRR4302535.2307515/94‑1 (MQ=60)

                                                                               ATGCAATGTCGCCCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTG               <  SRR4302535.830161/94‑1 (MQ=60)

                                                                                TGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGC              >  SRR4302535.1594895/1‑94 (MQ=60)

                                                                                TGCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGC              >  SRR4302535.2340667/1‑94 (MQ=60)

                                                                                 TCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCT             <  SRR4302535.1400619/94‑1 (MQ=60)

                                                                                 GCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCT             <  SRR4302535.3733033/94‑1 (MQ=60)

                                                                                 GCCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCT             <  SRR4302535.2585334/94‑1 (MQ=60)

                                                                                  CCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTG            >  SRR4302535.1812989/1‑94 (MQ=60)

                                                                                  CCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTG            >  SRR4302535.3616347/1‑94 (MQ=60)

                                                                                  CCATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTG            >  SRR4302535.4233950/1‑94 (MQ=60)

                                                                                   CATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGC           >  SRR4302535.3458887/1‑94 (MQ=60)

                                                                                    ATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCG          >  SRR4302535.3201689/1‑94 (MQ=60)

                                                                                    ATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCG          >  SRR4302535.4556485/1‑94 (MQ=60)

                                                                                    ATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCG          <  SRR4302535.4534314/94‑1 (MQ=60)

                                                                                    ATGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCG          >  SRR4302535.2945311/1‑94 (MQ=60)

                                                                                     TGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGA         >  SRR4302535.3167146/1‑94 (MQ=60)

                                                                                     TGTCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGA         <  SRR4302535.2290265/94‑1 (MQ=60)

                                                                                       TCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGACG       <  SRR4302535.3191734/94‑1 (MQ=60)

                                                                                       TCGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGACG       <  SRR4302535.4204344/94‑1 (MQ=60)

                                                                                        CGACCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGACGG      >  SRR4302535.1934054/1‑94 (MQ=60)

                                                                                           CCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGACGGCGC   >  SRR4302535.3414244/1‑94 (MQ=60)

                                                                                           CCCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGACGGCGC   >  SRR4302535.3007000/1‑94 (MQ=60)

                                                                                            CCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGACGGCGCA  >  SRR4302535.338309/1‑94 (MQ=60)

TGTATCTCTGATAAAACTTGACTCTGGAGTCGACTCCAGAGTGTATCCTTCGGTTAATGAGAAAAAACTTAACCGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCTGCGACGGCGCA  >  NC_000913/3603998‑3604183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`