Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,624,700 T→C I807V (ATT→GTT)  yhiH ← putative ATP‑binding component of a transport system, fragment 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,624,7000TC100.0% 625.9 / NA 198I807V (ATT→GTT) yhiHputative ATP‑binding component of a transport system, fragment 1
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (95/103);  total (95/103)

Only 100 of 203 total aligned reads displayed.

GCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAATCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAAC  >  NC_000913/3624610‑3624789
                                                                                          |                                                                                         
gCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCt                                                                                         <  1:4365281/93‑1 (MQ=255)
gCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCt                                                                                         <  1:2830195/93‑1 (MQ=255)
gCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCt                                                                                         <  1:1733393/93‑1 (MQ=255)
 cccTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTg                                                                                        <  1:925982/93‑1 (MQ=255)
 cccTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTg                                                                                        <  2:1657507/93‑1 (MQ=255)
 cccTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTg                                                                                        <  2:2821572/93‑1 (MQ=255)
  ccTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTgg                                                                                       >  1:279217/1‑93 (MQ=255)
  ccTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTgg                                                                                       <  1:2352335/93‑1 (MQ=255)
   cTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGc                                                                                      >  1:1398972/1‑93 (MQ=255)
   cTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGc                                                                                      >  2:1908523/1‑93 (MQ=255)
   cTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGCGACAATCGCCGTTCCGAAAAGGGCGGGAACCTGGc                                                                                      >  2:431450/1‑93 (MQ=255)
    ttCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCt                                                                                     >  1:2386214/1‑93 (MQ=255)
    ttCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCt                                                                                     >  2:3406838/1‑93 (MQ=255)
    ttCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCt                                                                                     <  2:1848182/93‑1 (MQ=255)
    ttCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCt                                                                                     >  1:3322491/1‑93 (MQ=255)
      ccAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCttt                                                                                   >  1:4312619/1‑93 (MQ=255)
        aGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTc                                                                                 <  1:3832234/93‑1 (MQ=255)
         gCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCa                                                                                <  1:4398582/93‑1 (MQ=255)
         gCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCa                                                                                >  1:461683/1‑93 (MQ=255)
          cGAAGCTACCGGAGCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTGCAt                                                                               <  2:2584027/93‑1 (MQ=255)
           gAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATa                                                                              >  2:2930049/1‑93 (MQ=255)
           gAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATa                                                                              <  1:4667554/93‑1 (MQ=255)
            aaGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATaa                                                                             >  1:3720599/1‑93 (MQ=255)
              gCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAg                                                                           >  2:4305464/1‑93 (MQ=255)
                tACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGt                                                                         <  2:2608577/93‑1 (MQ=255)
                tACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGt                                                                         <  2:1104718/93‑1 (MQ=255)
                tACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGt                                                                         >  1:1625840/1‑93 (MQ=255)
                tACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGt                                                                         <  2:3251813/93‑1 (MQ=255)
                 aCCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTg                                                                        <  1:558974/93‑1 (MQ=255)
                    ggATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGgag                                                                     <  2:2284853/93‑1 (MQ=255)
                      atcgatcATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGAt                                                                   >  2:1357311/1‑93 (MQ=255)
                        cgatcATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATca                                                                 >  2:3770732/1‑93 (MQ=255)
                           tcatcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATcagca                                                              >  2:403833/1‑93 (MQ=255)
                           tcatcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATcagca                                                              <  2:929796/93‑1 (MQ=255)
                            catcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATcagcag                                                             >  1:858292/1‑93 (MQ=255)
                             atcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCagcagc                                                            >  2:1188344/1‑93 (MQ=255)
                             atcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCagaagc                                                            >  1:2895717/1‑93 (MQ=255)
                              tcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGcc                                                           <  2:4241655/93‑1 (MQ=255)
                                  ggAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCAt                                                       >  1:2116199/1‑93 (MQ=255)
                                   gAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCAtt                                                      <  1:2301697/93‑1 (MQ=255)
                                   gAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCAtt                                                      >  1:260831/1‑93 (MQ=255)
                                    aaaaCTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTc                                                     <  1:3217655/93‑1 (MQ=255)
                                      aaCTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCg                                                   <  2:1692815/93‑1 (MQ=255)
                                       aCTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCgg                                                  <  2:3151545/93‑1 (MQ=255)
                                        cTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGt                                                 >  2:80749/1‑93 (MQ=255)
                                            gtCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCa                                             >  1:1278448/1‑93 (MQ=255)
                                             tCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCaa                                            <  2:1003846/93‑1 (MQ=255)
                                              cGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAat                                           >  1:2946801/1‑93 (MQ=255)
                                              cGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAat                                           <  2:2233555/93‑1 (MQ=255)
                                               gCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAatg                                          >  1:4028635/1‑93 (MQ=255)
                                                ccGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAatga                                         >  2:1061257/1‑93 (MQ=255)
                                                  gggATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAatgatg                                       >  1:1793300/1‑93 (MQ=255)
                                                   ggATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAAtgatga                                      <  2:3071681/93‑1 (MQ=255)
                                                   ggATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAAtgatga                                      <  2:4349464/93‑1 (MQ=255)
                                                   ggATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAAtgatga                                      >  2:653245/1‑93 (MQ=255)
                                                     aTCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGata                                    <  1:2001563/93‑1 (MQ=255)
                                                      tCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGatat                                   <  1:3945492/93‑1 (MQ=255)
                                                      tCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGatat                                   <  2:4552331/93‑1 (MQ=255)
                                                        aaCGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAc                                 >  1:1060222/1‑93 (MQ=255)
                                                         aCGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAca                                <  1:1353824/93‑1 (MQ=255)
                                                          cGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcag                               <  2:2771947/93‑1 (MQ=255)
                                                          cGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcag                               <  2:353117/93‑1 (MQ=255)
                                                          cGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcag                               <  2:888552/93‑1 (MQ=255)
                                                           gTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGGAATGATGATATAcaga                              >  1:1088159/1‑92 (MQ=255)
                                                           gTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcagc                              >  2:3345333/1‑93 (MQ=255)
                                                           gTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcagc                              >  2:3638456/1‑93 (MQ=255)
                                                            tGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTCTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcagca                             <  2:1887164/93‑1 (MQ=255)
                                                             gATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcagcag                            <  2:1490059/93‑1 (MQ=255)
                                                              aTAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACagcagc                           >  2:3042653/1‑93 (MQ=255)
                                                               tAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAgcg                          >  2:2698535/1‑93 (MQ=255)
                                                                aaTCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAgcgc                         <  2:3436231/93‑1 (MQ=255)
                                                                 aTCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGcgcc                        >  1:3029305/1‑93 (MQ=255)
                                                                  tCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGcgccg                       >  1:894787/1‑93 (MQ=255)
                                                                   cGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGcgccgc                      <  1:3677642/93‑1 (MQ=255)
                                                                     ccGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCa                    <  2:2400623/93‑1 (MQ=255)
                                                                     ccGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCa                    >  2:1183890/1‑93 (MQ=255)
                                                                     ccGTTCCGAAAACGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCa                    <  2:2947409/93‑1 (MQ=255)
                                                                      cGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAg                   <  2:544214/93‑1 (MQ=255)
                                                                       gTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAgg                  >  2:3010092/1‑93 (MQ=255)
                                                                       gTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAgg                  >  1:64008/1‑93 (MQ=255)
                                                                       gTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAgg                  >  2:1274391/1‑93 (MQ=255)
                                                                       gTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAgg                  <  2:3739206/93‑1 (MQ=255)
                                                                        ttCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCCTTCCGGCGGCCATGATGATATACAGAAGCGCCGCCAggg                 >  2:3567490/1‑93 (MQ=255)
                                                                        ttCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAggg                 >  1:4512588/1‑93 (MQ=255)
                                                                        ttCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAggg                 >  1:1599340/1‑93 (MQ=255)
                                                                         tCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGt                <  1:3074265/93‑1 (MQ=255)
                                                                         tCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGt                <  1:4553642/93‑1 (MQ=255)
                                                                           cGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGa              <  1:3197595/93‑1 (MQ=255)
                                                                            gAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAg             >  2:2721209/1‑93 (MQ=255)
                                                                             aaaaTGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGTAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGc            <  1:2555956/93‑1 (MQ=255)
                                                                             aaaaTGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGc            <  2:1165212/93‑1 (MQ=255)
                                                                             aaaaTGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGc            <  1:2166706/93‑1 (MQ=255)
                                                                               aaTGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGt          >  1:4118919/1‑93 (MQ=255)
                                                                                 tGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCa        <  1:3427529/93‑1 (MQ=255)
                                                                                  ggcggcAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAg       <  2:3824137/93‑1 (MQ=255)
                                                                                  ggcggcAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAg       <  1:4477550/93‑1 (MQ=255)
                                                                                      gcAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGaaa   <  1:3110227/93‑1 (MQ=255)
                                                                                      gcAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGaaa   <  1:4223011/93‑1 (MQ=255)
                                                                                       cAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAAc  <  2:573434/93‑1 (MQ=255)
                                                                                       cAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGGCAGGAAAc  <  2:4571764/93‑1 (MQ=255)
                                                                                          |                                                                                         
GCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAATCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAAC  >  NC_000913/3624610‑3624789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAATCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGCC  >  NC_000913/3624608‑3624793
                                                                                            |                                                                                             
AGGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACC                                                                                              >  SRR4302535.400910/1‑94 (MQ=60)
 GGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCT                                                                                             >  SRR4302535.3128481/1‑94 (MQ=60)
  GCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTG                                                                                            <  SRR4302535.2850282/94‑1 (MQ=60)
  GCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTG                                                                                            <  SRR4302535.4395152/94‑1 (MQ=60)
  GCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTG                                                                                            <  SRR4302535.1745920/94‑1 (MQ=60)
   CCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGG                                                                                           <  SRR4302535.932543/94‑1 (MQ=60)
   CCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGG                                                                                           >  SRR4302535.281164/1‑94 (MQ=60)
   CCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGG                                                                                           <  SRR4302535.1695218/94‑1 (MQ=60)
    CCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGC                                                                                          >  SRR4302535.1095016/1‑94 (MQ=60)
    CCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGC                                                                                          <  SRR4302535.2369199/94‑1 (MQ=60)
    CCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGC                                                                                          >  SRR4302535.1408959/1‑94 (MQ=60)
     CTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCT                                                                                         >  SRR4302535.3224750/1‑94 (MQ=60)
     CTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCT                                                                                         >  SRR4302535.3345607/1‑94 (MQ=60)
     CTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCT                                                                                         >  SRR4302535.2403361/1‑94 (MQ=60)
       TCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTT                                                                                       >  SRR4302535.4342119/1‑94 (MQ=60)
        CCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTT                                                                                      <  SRR4302535.2304475/94‑1 (MQ=60)
          AGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCA                                                                                    >  SRR4302535.464908/1‑94 (MQ=60)
          AGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCA                                                                                    <  SRR4302535.4403490/94‑1 (MQ=60)
          AGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCA                                                                                    >  SRR4302535.2837890/1‑94 (MQ=60)
          AGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCA                                                                                    <  SRR4302535.3858661/94‑1 (MQ=60)
           GCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCAT                                                                                   <  SRR4302535.4428688/94‑1 (MQ=60)
             GAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAA                                                                                 <  SRR4302535.4699097/94‑1 (MQ=60)
             GAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAA                                                                                 >  SRR4302535.3746376/1‑94 (MQ=60)
               AGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAG                                                                               <  SRR4302535.2139410/94‑1 (MQ=60)
               AGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAG                                                                               >  SRR4302535.2628685/1‑94 (MQ=60)
               AGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAG                                                                               <  SRR4302535.1844031/94‑1 (MQ=60)
                GCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGG                                                                              <  SRR4302535.2099933/94‑1 (MQ=60)
                 CTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGT                                                                             <  SRR4302535.3419268/94‑1 (MQ=60)
                 CTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGT                                                                             >  SRR4302535.1637578/1‑94 (MQ=60)
                  TACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTG                                                                            >  SRR4302535.2610004/1‑94 (MQ=60)
                   ACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGG                                                                           <  SRR4302535.562881/94‑1 (MQ=60)
                       GATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGAT                                                                       >  SRR4302535.1162662/1‑94 (MQ=60)
                         TCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCA                                                                     <  SRR4302535.4468875/94‑1 (MQ=60)
                         TCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCA                                                                     <  SRR4302535.3069074/94‑1 (MQ=60)
                         TCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCA                                                                     >  SRR4302535.619621/1‑94 (MQ=60)
                          CGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAG                                                                    >  SRR4302535.2373135/1‑94 (MQ=60)
                          CGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAG                                                                    >  SRR4302535.4042091/1‑94 (MQ=60)
                             TCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAG                                                                 >  SRR4302535.864340/1‑94 (MQ=60)
                              CATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGAAGC                                                                >  SRR4302535.2916197/1‑94 (MQ=60)
                               ATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCC                                                               >  SRR4302535.899376/1‑94 (MQ=60)
                               ATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCC                                                               >  SRR4302535.942950/1‑94 (MQ=60)
                                TCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCC                                                              <  SRR4302535.328015/94‑1 (MQ=60)
                                TCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCC                                                              <  SRR4302535.2905616/94‑1 (MQ=60)
                                   CGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCAT                                                           >  SRR4302535.2131469/1‑94 (MQ=60)
                                    GGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATT                                                          >  SRR4302535.4342371/1‑94 (MQ=60)
                                    GGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATT                                                          >  SRR4302535.262640/1‑94 (MQ=60)
                                     GAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTC                                                         <  SRR4302535.2318168/94‑1 (MQ=60)
                                      AAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCC                                                        <  SRR4302535.3239941/94‑1 (MQ=60)
                                        AACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGG                                                      >  SRR4302535.4079027/1‑94 (MQ=60)
                                        AACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGCGGAGAGCAGCAGCCCCAACCCGG                                                      >  SRR4302535.4715347/1‑94 (MQ=60)
                                             TGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCA                                                 >  SRR4302535.1287578/1‑94 (MQ=60)
                                              GTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAA                                                >  SRR4302535.1614746/1‑94 (MQ=60)
                                               TCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAAT                                               >  SRR4302535.2967507/1‑94 (MQ=60)
                                                CGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATG                                              >  SRR4302535.4056197/1‑94 (MQ=60)
                                                   CGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATG                                           <  SRR4302535.4551801/94‑1 (MQ=60)
                                                   CGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATG                                           >  SRR4302535.1806265/1‑94 (MQ=60)
                                                     GGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGAT                                         <  SRR4302535.2985435/94‑1 (MQ=60)
                                                     GGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGAT                                         <  SRR4302535.859629/94‑1 (MQ=60)
                                                       ATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATAT                                       <  SRR4302535.2015985/94‑1 (MQ=60)
                                                       ATCAACGTGATAATCGCCGTTCCGAAAATGGAGGCAACCTGGCTTTTCATAAAGGAGGAGATCAGCAGCCCCATTCCGGAGGCAATGATGATAT                                       >  SRR4302535.4597978/1‑94 (MQ=60)
                                                        TCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATA                                      <  SRR4302535.3972435/94‑1 (MQ=60)
                                                         CAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAC                                     >  SRR4302535.4530032/1‑94 (MQ=60)
                                                         CAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAC                                     >  SRR4302535.1067770/1‑94 (MQ=60)
                                                         CAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAC                                     >  SRR4302535.3945393/1‑94 (MQ=60)
                                                           ACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAG                                   >  SRR4302535.3701207/1‑94 (MQ=60)
                                                           ACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAG                                   >  SRR4302535.1803901/1‑94 (MQ=60)
                                                           ACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAG                                   <  SRR4302535.1363509/94‑1 (MQ=60)
                                                            CGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGGAATGATGATATACAGA                                  >  SRR4302535.1095901/1‑94 (MQ=60)
                                                             GTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCA                                 >  SRR4302535.2559520/1‑94 (MQ=60)
                                                                ATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCG                              <  SRR4302535.2956396/94‑1 (MQ=60)
                                                                  AATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAgagcaaggcc                            >  SRR4302535.2542093/1‑84 (MQ=60)
                                                                  AATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCC                            >  SRR4302535.3050509/1‑94 (MQ=60)
                                                                   ATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCG                           <  SRR4302535.2353831/94‑1 (MQ=60)
                                                                   ATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCG                           >  SRR4302535.901134/1‑94 (MQ=60)
                                                                     CGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCC                         <  SRR4302535.3703100/94‑1 (MQ=60)
                                                                       CCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCATCGCCGCCAG                       <  SRR4302535.3175441/94‑1 (MQ=60)
                                                                        CGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGG                      >  SRR4302535.64490/1‑94 (MQ=60)
                                                                        CGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGG                      >  SRR4302535.4665656/1‑94 (MQ=60)
                                                                        CGTACCAAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGG                      <  SRR4302535.4203248/94‑1 (MQ=60)
                                                                         GTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGG                     >  SRR4302535.4543535/1‑94 (MQ=60)
                                                                         GTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGG                     <  SRR4302535.1456540/94‑1 (MQ=60)
                                                                         GTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGG                     >  SRR4302535.1610873/1‑94 (MQ=60)
                                                                          TTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGT                    <  SRR4302535.1317578/94‑1 (MQ=60)
                                                                           TCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTG                   <  SRR4302535.4584753/94‑1 (MQ=60)
                                                                           TCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTG                   <  SRR4302535.4245955/94‑1 (MQ=60)
                                                                           TCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTG                   <  SRR4302535.3095720/94‑1 (MQ=60)
                                                                            CCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGA                  >  SRR4302535.4291798/1‑94 (MQ=60)
                                                                             CGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAG                 <  SRR4302535.1407407/94‑1 (MQ=60)
                                                                             CGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAG                 <  SRR4302535.3219721/94‑1 (MQ=60)
                                                                               AAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGTAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCG               <  SRR4302535.2574362/94‑1 (MQ=60)
                                                                               AAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCG               <  SRR4302535.2182238/94‑1 (MQ=60)
                                                                                AAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGT              >  SRR4302535.4147107/1‑94 (MQ=60)
                                                                                  ATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCA            >  SRR4302535.3740523/1‑94 (MQ=60)
                                                                                  ATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCA            <  SRR4302535.901178/94‑1 (MQ=60)
                                                                                   TGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAG           <  SRR4302535.3451355/94‑1 (MQ=60)
                                                                                    GGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGG          <  SRR4302535.4508293/94‑1 (MQ=60)
                                                                                    GGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGG          <  SRR4302535.3805466/94‑1 (MQ=60)
                                                                                        GCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAAC      <  SRR4302535.4251906/94‑1 (MQ=60)
                                                                                        GCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAAC      <  SRR4302535.3131881/94‑1 (MQ=60)
                                                                                         CAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACT     >  SRR4302535.1394498/1‑94 (MQ=60)
                                                                                         CAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGGGAGCGTCAGGAAACT     >  SRR4302535.4000899/1‑94 (MQ=60)
                                                                                          AACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTG    >  SRR4302535.4413022/1‑94 (MQ=60)
                                                                                          AACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTG    >  SRR4302535.3557882/1‑94 (MQ=60)
                                                                                           ACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGC   >  SRR4302535.3073484/1‑94 (MQ=60)
                                                                                            CCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGCC  >  SRR4302535.766606/1‑94 (MQ=60)
                                                                                            CCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGCC  >  SRR4302535.2701683/1‑94 (MQ=60)
                                                                                            CCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGCC  >  SRR4302535.2701684/1‑94 (MQ=60)
                                                                                            |                                                                                             
AGGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAATCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGCC  >  NC_000913/3624608‑3624793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑