Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,628,759	G→A	R488C (CGT→TGT)	yhiJ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,628,759	0	G	A	100.0%	1000.7 / NA	271	R488C (CGT→TGT)	yhiJ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (148/123); total (148/123)

Only 100 of 278 total aligned reads displayed.

ACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACA  >  NC_000913/3628669‑3628848

aCTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACagg                                                                                         >  2:2986639/1‑93 (MQ=255)

aCTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACagg                                                                                         <  2:2937881/93‑1 (MQ=255)

aCTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACagg                                                                                         <  2:3801685/93‑1 (MQ=255)

 cTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGc                                                                                        <  1:1331549/93‑1 (MQ=255)

 cTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGc                                                                                        >  1:1531354/1‑93 (MQ=255)

  ttCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCg                                                                                       >  1:1021513/1‑93 (MQ=255)

   tCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGt                                                                                      <  2:68724/93‑1 (MQ=255)

     cAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTa                                                                                    >  1:4085008/1‑93 (MQ=255)

      aGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTaa                                                                                   <  1:4585279/93‑1 (MQ=255)

      aGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTaa                                                                                   >  2:3513404/1‑93 (MQ=255)

       gggAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAg                                                                                  <  1:3288249/93‑1 (MQ=255)

       gggAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAg                                                                                  >  2:4537292/1‑93 (MQ=255)

        ggAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGa                                                                                 >  1:2344664/1‑93 (MQ=255)

        ggAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGa                                                                                 <  2:4400574/93‑1 (MQ=255)

           gTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCt                                                                              <  1:3334790/93‑1 (MQ=255)

           gTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCt                                                                              >  1:2164585/1‑93 (MQ=255)

               ttATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTaaaa                                                                          >  1:1962064/1‑93 (MQ=255)

                 aTCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACt                                                                        <  1:4457499/93‑1 (MQ=255)

                  tctcAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTg                                                                       >  2:1184354/1‑93 (MQ=255)

                  tctcAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTg                                                                       >  1:2715737/1‑93 (MQ=255)

                  tctcAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTg                                                                       >  2:2689004/1‑93 (MQ=255)

                  tctcAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTg                                                                       >  1:1618812/1‑93 (MQ=255)

                   ctcAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGt                                                                      <  2:3327767/93‑1 (MQ=255)

                   ctcAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGt                                                                      <  1:2879119/93‑1 (MQ=255)

                   ctcAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGt                                                                      <  1:2452892/93‑1 (MQ=255)

                     cAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTcc                                                                    <  2:161512/93‑1 (MQ=255)

                          ccTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGtt                                                               <  1:3035365/93‑1 (MQ=255)

                               aCCACGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGCTAAGACCTAAAACTGTCCCCGTTTCggc                                                          >  2:1826737/1‑91 (MQ=255)

                                ccAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCt                                                         >  2:464465/1‑93 (MQ=255)

                                ccAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCt                                                         >  2:2870579/1‑93 (MQ=255)

                                 cAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTa                                                        >  1:930795/1‑93 (MQ=255)

                                  aGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTAt                                                       <  2:3602547/93‑1 (MQ=255)

                                  aGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTAt                                                       >  2:3065848/1‑93 (MQ=255)

                                    ggTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGc                                                     >  2:397989/1‑93 (MQ=255)

                                     gTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCg                                                    <  1:3542560/93‑1 (MQ=255)

                                       tAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGtt                                                  <  2:1962064/93‑1 (MQ=255)

                                        aaTTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTtc                                                 <  2:420185/93‑1 (MQ=255)

                                        aaTTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTtc                                                 >  1:2773195/1‑93 (MQ=255)

                                        aaTTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTtc                                                 <  2:713307/93‑1 (MQ=255)

                                         aTTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTtct                                                <  1:4328330/93‑1 (MQ=255)

                                          tttGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTtctc                                               >  1:3607713/1‑93 (MQ=255)

                                          tttGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTtctc                                               <  2:2833404/93‑1 (MQ=255)

                                           ttGGCAATTATTCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTctct                                              <  2:3840557/93‑1 (MQ=255)

                                           ttGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTctct                                              <  1:1827410/93‑1 (MQ=255)

                                            tGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCtt                                             <  2:1241024/93‑1 (MQ=255)

                                                aaTTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTccac                                         >  2:3381903/1‑93 (MQ=255)

                                                 aTTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTccacc                                        <  2:2361733/93‑1 (MQ=255)

                                                  ttATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTccacca                                       >  1:318341/1‑93 (MQ=255)

                                                    atgcatgcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGCCCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCAtt                                     <  2:3658743/93‑1 (MQ=255)

                                                    atgcatgcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCAtt                                     <  1:767408/93‑1 (MQ=255)

                                                      gcatgcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTc                                   <  2:112171/93‑1 (MQ=255)

                                                      gcatgcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTc                                   >  1:3787126/1‑93 (MQ=255)

                                                      gcatgcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTc                                   <  2:1784870/93‑1 (MQ=255)

                                                      gcatgcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTc                                   <  1:1230726/93‑1 (MQ=255)

                                                       catgcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTcc                                  >  2:2075332/1‑93 (MQ=255)

                                                        atgcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCg                                 >  1:4510778/1‑93 (MQ=255)

                                                        atgcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCg                                 <  2:3413651/93‑1 (MQ=255)

                                                         tgcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGt                                <  1:1693399/93‑1 (MQ=255)

                                                          gcTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGtt                               <  1:3442667/93‑1 (MQ=255)

                                                           cTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTa                              <  1:2651620/93‑1 (MQ=255)

                                                           cTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTa                              <  2:2388204/93‑1 (MQ=255)

                                                           cTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTa                              <  1:2559310/93‑1 (MQ=255)

                                                            tGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTAt                             <  2:3589823/93‑1 (MQ=255)

                                                            tGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTAt                             >  1:1394523/1‑93 (MQ=255)

                                                            tGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTAt                             >  2:376907/1‑93 (MQ=255)

                                                             gAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTAtg                            >  2:217617/1‑93 (MQ=255)

                                                               aCATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTAtgtg                          >  1:550297/1‑93 (MQ=255)

                                                                cATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGc                         <  1:2613467/93‑1 (MQ=255)

                                                                cATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGc                         >  2:4093661/1‑93 (MQ=255)

                                                                cATTATTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTATCTTCCACCATTTCCGTTATGAGc                         >  2:2276583/1‑93 (MQ=255)

                                                                  ttcttcCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGcaa                       >  2:3091609/1‑93 (MQ=255)

                                                                  ttcttcCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGcaa                       >  1:1126654/1‑93 (MQ=255)

                                                                  ttcttcCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGcaa                       >  2:1341647/1‑93 (MQ=255)

                                                                     ttcCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGcaacaa                    <  2:2777374/93‑1 (MQ=255)

                                                                     ttcCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGcaacaa                    >  1:4179400/1‑93 (MQ=255)

                                                                      tcCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCaacaac                   <  1:3134085/93‑1 (MQ=255)

                                                                         aGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTg                >  1:4480450/1‑93 (MQ=255)

                                                                          gCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGa               <  1:2847936/93‑1 (MQ=255)

                                                                             tGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGAttt            >  2:2925372/1‑93 (MQ=255)

                                                                             tGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGAttt            >  1:803550/1‑93 (MQ=255)

                                                                             tGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGAttt            >  2:2543207/1‑93 (MQ=255)

                                                                              ggttACTGTCAGAGCCGTAAAGGCCTAAAACTGGCCCCGTTTCGCGTGTGCGTCCTCTGCCACCATTTCCGTTAGGTGCAACAACTTGATTta           <  2:3001191/91‑1 (MQ=255)

                                                                              gTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTta           >  1:1576040/1‑93 (MQ=255)

                                                                              gTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTta           <  1:2818320/93‑1 (MQ=255)

                                                                              gTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTta           <  1:4372027/93‑1 (MQ=255)

                                                                               tttACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTtat          <  1:661283/93‑1 (MQ=255)

                                                                               tttACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTtat          >  2:3340039/1‑93 (MQ=255)

                                                                               tttACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTtat          >  2:4015107/1‑93 (MQ=255)

                                                                               tttACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTtat          <  1:3255395/93‑1 (MQ=255)

                                                                               tttACTGTCACAGGCGTTAAGACCTAAAACTGCCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTtat          <  2:3284373/93‑1 (MQ=255)

                                                                               tttACTGACACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTtat          >  2:799169/1‑93 (MQ=255)

                                                                                ttACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTtata         <  1:4007928/93‑1 (MQ=255)

                                                                                ttACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTtata         >  1:1755497/1‑93 (MQ=255)

                                                                                 tACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATAc        >  2:4298524/1‑93 (MQ=255)

                                                                                  tcTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATAcc       <  2:3917330/92‑1 (MQ=255)

                                                                                    tGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTa     >  2:2452012/1‑93 (MQ=255)

                                                                                    tGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTa     >  2:3443755/1‑93 (MQ=255)

                                                                                     gTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTaa    <  2:4237840/93‑1 (MQ=255)

                                                                                     gTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTaa    <  1:2946346/93‑1 (MQ=255)

                                                                                     gTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTaa    <  2:1712888/93‑1 (MQ=255)

ACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACA  >  NC_000913/3628669‑3628848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTG  >  NC_000913/3628666‑3628852

AAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACA                                                                                               <  SRR4302535.2056293/94‑1 (MQ=60)

AAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACA                                                                                               >  SRR4302535.300736/1‑94 (MQ=60)

 AGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAG                                                                                              >  SRR4302535.1865530/1‑94 (MQ=60)

  GACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGG                                                                                             <  SRR4302535.3217916/94‑1 (MQ=60)

  GACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGG                                                                                             <  SRR4302535.3837315/94‑1 (MQ=60)

   ACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGC                                                                                            >  SRR4302535.1542388/1‑94 (MQ=60)

   ACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGC                                                                                            >  SRR4302535.3795409/1‑94 (MQ=60)

    CTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCG                                                                                           >  SRR4302535.1028772/1‑94 (MQ=60)

    CTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCG                                                                                           <  SRR4302535.1341049/94‑1 (MQ=60)

    CTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTCGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCG                                                                                           <  SRR4302535.2654944/94‑1 (MQ=60)

     TTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGT                                                                                          <  SRR4302535.3238870/94‑1 (MQ=60)

       CCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTA                                                                                        >  SRR4302535.4112955/1‑94 (MQ=60)

       CCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGAAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTA                                                                                        >  SRR4302535.2533362/1‑94 (MQ=60)

        CAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAA                                                                                       >  SRR4302535.2797894/1‑94 (MQ=60)

         AGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAG                                                                                      <  SRR4302535.4616503/94‑1 (MQ=60)

          GGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGA                                                                                     >  SRR4302535.2361462/1‑94 (MQ=60)

          GGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGA                                                                                     >  SRR4302535.2933435/1‑94 (MQ=60)

          GGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGA                                                                                     <  SRR4302535.3311111/94‑1 (MQ=60)

          GGGAGGGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGA                                                                                     >  SRR4302535.3550972/1‑94 (MQ=60)

            GAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACC                                                                                   <  SRR4302535.3105895/94‑1 (MQ=60)

            GAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACC                                                                                   <  SRR4302535.4565307/94‑1 (MQ=60)

             AGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCT                                                                                  >  SRR4302535.2180109/1‑94 (MQ=60)

              GTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTA                                                                                 <  SRR4302535.3358016/94‑1 (MQ=60)

                GGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAA                                                                               >  SRR4302535.576550/1‑94 (MQ=60)

                 GTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAA                                                                              >  SRR4302535.1976210/1‑94 (MQ=60)

                   TATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACT                                                                            >  SRR4302535.2877247/1‑94 (MQ=60)

                    ATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTG                                                                           >  SRR4302535.2735138/1‑94 (MQ=60)

                    ATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTG                                                                           >  SRR4302535.1630485/1‑94 (MQ=60)

                    ATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTG                                                                           <  SRR4302535.4488069/94‑1 (MQ=60)

                      CTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTC                                                                         <  SRR4302535.2470570/94‑1 (MQ=60)

                      CTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTC                                                                         <  SRR4302535.2899504/94‑1 (MQ=60)

                      CTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTC                                                                         >  SRR4302535.2440878/1‑94 (MQ=60)

                      CTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTC                                                                         >  SRR4302535.1610840/1‑94 (MQ=60)

                      CTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTC                                                                         <  SRR4302535.3293457/94‑1 (MQ=60)

                         AGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCC                                                                      <  SRR4302535.4071598/94‑1 (MQ=60)

                         AGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCC                                                                      >  SRR4302535.319849/1‑94 (MQ=60)

                           GCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGT                                                                    <  SRR4302535.1189233/94‑1 (MQ=60)

                            CCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTT                                                                   <  SRR4302535.2750656/94‑1 (MQ=60)

                             CCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTT                                                                  >  SRR4302535.964220/1‑94 (MQ=60)

                             CCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTT                                                                  <  SRR4302535.3056617/94‑1 (MQ=60)

                             CCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTT                                                                  >  SRR4302535.1722890/1‑94 (MQ=60)

                              CTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTC                                                                 <  SRR4302535.1546084/94‑1 (MQ=60)

                              CTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTC                                                                 <  SRR4302535.1716793/94‑1 (MQ=60)

                               TGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCG                                                                >  SRR4302535.78350/1‑94 (MQ=60)

                               TGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCG                                                                <  SRR4302535.2983826/94‑1 (MQ=60)

                                  ACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCT                                                             >  SRR4302535.1393131/1‑94 (MQ=60)

                                  ACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCT                                                             <  SRR4302535.1623002/94‑1 (MQ=60)

                                   CCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTA                                                            >  SRR4302535.3201826/1‑94 (MQ=60)

                                   CCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTA                                                            >  SRR4302535.937376/1‑94 (MQ=60)

                                     AGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATG                                                          >  SRR4302535.1207402/1‑94 (MQ=60)

                                     AGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATG                                                          >  SRR4302535.1531721/1‑94 (MQ=60)

                                     AGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATG                                                          >  SRR4302535.2675412/1‑94 (MQ=60)

                                      GGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGC                                                         >  SRR4302535.4492770/1‑94 (MQ=60)

                                       GGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCG                                                        >  SRR4302535.1897794/1‑94 (MQ=60)

                                        GTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGT                                                       >  SRR4302535.3209995/1‑94 (MQ=60)

                                        GTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGT                                                       <  SRR4302535.3567171/94‑1 (MQ=60)

                                          TAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTC                                                     >  SRR4302535.2792941/1‑94 (MQ=60)

                                          TAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTC                                                     >  SRR4302535.2617494/1‑94 (MQ=60)

                                           AATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCT                                                    >  SRR4302535.4717532/1‑94 (MQ=60)

                                           AATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCT                                                    <  SRR4302535.450008/94‑1 (MQ=60)

                                            ATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTC                                                   >  SRR4302535.913322/1‑94 (MQ=60)

                                            ATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTC                                                   >  SRR4302535.3632733/1‑94 (MQ=60)

                                            ATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTC                                                   <  SRR4302535.4357925/94‑1 (MQ=60)

                                             TTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCT                                                  <  SRR4302535.2222591/94‑1 (MQ=60)

                                              TTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTT                                                 <  SRR4302535.3541083/94‑1 (MQ=60)

                                              TTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTT                                                 <  SRR4302535.1840606/94‑1 (MQ=60)

                                               TGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTC                                                <  SRR4302535.4525682/94‑1 (MQ=60)

                                                GGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCC                                               >  SRR4302535.771425/1‑94 (MQ=60)

                                                GGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCC                                               <  SRR4302535.905278/94‑1 (MQ=60)

                                                  CAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTCAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCAC                                             <  SRR4302535.3326803/94‑1 (MQ=60)

                                                  CAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCAC                                             >  SRR4302535.285947/1‑94 (MQ=60)

                                                  CAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCAC                                             >  SRR4302535.3595021/1‑94 (MQ=60)

                                                    ATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCA                                           >  SRR4302535.4011743/1‑94 (MQ=60)

                                                    ATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCA                                           >  SRR4302535.320548/1‑94 (MQ=60)

                                                    ATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCA                                           <  SRR4302535.3808407/94‑1 (MQ=60)

                                                    ATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCA                                           <  SRR4302535.3454952/94‑1 (MQ=60)

                                                     TTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCAT                                          <  SRR4302535.2014244/94‑1 (MQ=60)

                                                       ATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTT                                        >  SRR4302535.4063698/1‑94 (MQ=60)

                                                       ATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTT                                        <  SRR4302535.1548626/94‑1 (MQ=60)

                                                       ATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTT                                        <  SRR4302535.772811/94‑1 (MQ=60)

                                                        TGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTC                                       >  SRR4302535.3813251/1‑94 (MQ=60)

                                                        TGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTC                                       <  SRR4302535.539204/94‑1 (MQ=60)

                                                         GCATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCC                                      <  SRR4302535.1239525/94‑1 (MQ=60)

                                                          CATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCG                                     >  SRR4302535.4541721/1‑94 (MQ=60)

                                                           ATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGT                                    >  SRR4302535.3042715/1‑94 (MQ=60)

                                                           ATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGT                                    >  SRR4302535.3416373/1‑94 (MQ=60)

                                                           ATGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGT                                    >  SRR4302535.1289763/1‑94 (MQ=60)

                                                            TGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTT                                   <  SRR4302535.1705644/94‑1 (MQ=60)

                                                            TGCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTT                                   <  SRR4302535.2835128/94‑1 (MQ=60)

                                                             GCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTA                                  >  SRR4302535.1341074/1‑94 (MQ=60)

                                                             GCTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTA                                  <  SRR4302535.3466608/94‑1 (MQ=60)

                                                              CTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTGCGTTAT                                 >  SRR4302535.1704712/1‑94 (MQ=60)

                                                              CTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTAT                                 <  SRR4302535.2577733/94‑1 (MQ=60)

                                                              CTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTAT                                 >  SRR4302535.1404482/1‑94 (MQ=60)

                                                              CTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTAT                                 <  SRR4302535.2670615/94‑1 (MQ=60)

                                                              CTGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTAT                                 <  SRR4302535.4466984/94‑1 (MQ=60)

                                                               TGAACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATG                                >  SRR4302535.956986/1‑94 (MQ=60)

                                                                 AACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTG                              >  SRR4302535.554147/1‑94 (MQ=60)

                                                                 AACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTG                              <  SRR4302535.1780772/94‑1 (MQ=60)

                                                                 AACATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTG                              <  SRR4302535.1685329/94‑1 (MQ=60)

                                                                   CATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCA                            <  SRR4302535.2632212/94‑1 (MQ=60)

                                                                   CATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCA                            >  SRR4302535.1300403/1‑94 (MQ=60)

                                                                    ATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAA                           >  SRR4302535.4371706/1‑94 (MQ=60)

                                                                    ATTCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAA                           >  SRR4302535.1134696/1‑94 (MQ=60)

                                                                      TCTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACA                         <  SRR4302535.4487865/94‑1 (MQ=60)

                                                                       CTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAA                        >  SRR4302535.46190/1‑94 (MQ=60)

                                                                       CTTCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAA                        >  SRR4302535.4208005/1‑94 (MQ=60)

                                                                         TCCAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACT                      <  SRR4302535.3155905/94‑1 (MQ=60)

                                                                           CAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTG                    >  SRR4302535.4511205/1‑94 (MQ=60)

                                                                           CAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTG                    >  SRR4302535.2871180/1‑94 (MQ=60)

                                                                           CAGCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTG                    <  SRR4302535.4195581/94‑1 (MQ=60)

                                                                             GCATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGAT                  <  SRR4302535.2868120/94‑1 (MQ=60)

                                                                              CATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATT                 >  SRR4302535.604085/1‑94 (MQ=60)

                                                                              CATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATT                 <  SRR4302535.4153131/94‑1 (MQ=60)

                                                                              CATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATT                 >  SRR4302535.4209727/1‑94 (MQ=60)

                                                                              CATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATT                 >  SRR4302535.2860434/1‑94 (MQ=60)

                                                                              CATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATT                 >  SRR4302535.1879112/1‑94 (MQ=60)

                                                                               ATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTT                >  SRR4302535.809193/1‑94 (MQ=60)

                                                                               ATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTT                >  SRR4302535.66893/1‑94 (MQ=60)

                                                                               ATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTT                >  SRR4302535.1978619/1‑94 (MQ=60)

                                                                               ATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTT                <  SRR4302535.2251093/94‑1 (MQ=60)

                                                                               ATGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTT                >  SRR4302535.2647800/1‑94 (MQ=60)

                                                                                TGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTA               >  SRR4302535.1096285/1‑94 (MQ=60)

                                                                                TGTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTA               >  SRR4302535.1587408/1‑94 (MQ=60)

                                                                                 GTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTAT              <  SRR4302535.2838339/94‑1 (MQ=60)

                                                                                 GTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTAT              >  SRR4302535.3890549/1‑94 (MQ=60)

                                                                                 GTTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTAT              <  SRR4302535.4401942/94‑1 (MQ=60)

                                                                                  TTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATA             <  SRR4302535.3278012/94‑1 (MQ=60)

                                                                                  TTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATA             <  SRR4302535.665897/94‑1 (MQ=60)

                                                                                  TTTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATA             >  SRR4302535.1768183/1‑94 (MQ=60)

                                                                                   TTACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATAC            <  SRR4302535.4035348/94‑1 (MQ=60)

                                                                                     ACTGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCT          <  SRR4302535.3351173/94‑1 (MQ=60)

                                                                                       TGTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAA        >  SRR4302535.3104866/1‑94 (MQ=60)

                                                                                        GTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAAC       <  SRR4302535.4395654/94‑1 (MQ=60)

                                                                                        GTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAAC       >  SRR4302535.2599661/1‑94 (MQ=60)

                                                                                        GTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAAC       >  SRR4302535.2540920/1‑94 (MQ=60)

                                                                                        GTCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAAC       <  SRR4302535.2967052/94‑1 (MQ=60)

                                                                                         TCACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACA      >  SRR4302535.2674550/1‑94 (MQ=60)

                                                                                          CACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACAT     >  SRR4302535.3365395/1‑94 (MQ=60)

                                                                                          CACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACAT     >  SRR4302535.2031427/1‑94 (MQ=60)

                                                                                          CACAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCAGTTATGTGCAACAACTTGATTTATACCTAACAT     >  SRR4302535.2489249/1‑94 (MQ=60)

                                                                                            CAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTT   >  SRR4302535.2181868/1‑94 (MQ=60)

                                                                                            CAGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTAATGTGCAACAACTTGATTTATACCTAACATTT   <  SRR4302535.2752025/94‑1 (MQ=60)

                                                                                             AGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTG  >  SRR4302535.2794308/1‑94 (MQ=60)

                                                                                             AGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTG  <  SRR4302535.3668593/94‑1 (MQ=60)

AAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTG  >  NC_000913/3628666‑3628852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`