Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,638,599	A→G	V36V (GTA→GTG)	yhiP →	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,638,599	0	A	G	100.0%	689.3 / NA	219	V36V (GTA→GTG)	yhiP	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (94/125); total (94/125)

Only 100 of 228 total aligned reads displayed.

ATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCT  >  NC_000913/3638510‑3638688

aTGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTg                                                                                        >  1:4454364/1‑93 (MQ=255)

 tGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTgg                                                                                       >  1:2650880/1‑93 (MQ=255)

 tGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTgg                                                                                       <  1:2262359/93‑1 (MQ=255)

 tGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTgg                                                                                       <  1:4650925/93‑1 (MQ=255)

   gggATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCg                                                                                     >  1:3782247/1‑93 (MQ=255)

   gggATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCg                                                                                     >  1:1609423/1‑93 (MQ=255)

    ggATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCgg                                                                                    <  1:884074/93‑1 (MQ=255)

    ggATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCgg                                                                                    <  1:4289313/93‑1 (MQ=255)

     gATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGt                                                                                   <  2:549272/93‑1 (MQ=255)

       tgctgcAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGttt                                                                                 >  2:4440015/1‑93 (MQ=255)

           gcagcaACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTttctt                                                                             >  2:1446871/1‑93 (MQ=255)

           gcagcaACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTttctt                                                                             <  2:1751866/93‑1 (MQ=255)

               caACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGtt                                                                         <  1:4366979/93‑1 (MQ=255)

                  ccTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCATGGCGTGCTGGCGGTTTTCTTCGTTaaa                                                                      <  2:3508474/93‑1 (MQ=255)

                  ccTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTaaa                                                                      <  2:3161792/93‑1 (MQ=255)

                   ctctCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAAc                                                                     <  1:2896819/93‑1 (MQ=255)

                   cTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAAc                                                                     <  1:2495470/93‑1 (MQ=255)

                   cTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAAc                                                                     >  1:608353/1‑93 (MQ=255)

                   cTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAAc                                                                     <  1:4191766/93‑1 (MQ=255)

                   cTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAAc                                                                     <  2:3219549/93‑1 (MQ=255)

                   cTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAAc                                                                     <  1:1019510/93‑1 (MQ=255)

                    tCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACa                                                                    >  1:1735107/1‑93 (MQ=255)

                     cGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGGTTTCTTCGTTAAACAg                                                                   >  2:4033715/1‑93 (MQ=255)

                      gCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGc                                                                  >  1:1849203/1‑93 (MQ=255)

                       cccATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCt                                                                 >  2:121343/1‑93 (MQ=255)

                        ccATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCtt                                                                <  2:214219/93‑1 (MQ=255)

                        ccATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCtt                                                                <  1:508596/93‑1 (MQ=255)

                        ccATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCtt                                                                <  2:89551/93‑1 (MQ=255)

                         cATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTg                                                               >  2:407152/1‑93 (MQ=255)

                          aTTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTgg                                                              >  2:2801102/1‑93 (MQ=255)

                           tttttCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGa                                                             >  1:3554635/1‑93 (MQ=255)

                             tttCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGAtt                                                           <  1:1947198/93‑1 (MQ=255)

                              ttCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGAttt                                                          >  1:2820537/1‑92 (MQ=255)

                              ttCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATtc                                                          <  1:2039830/93‑1 (MQ=255)

                                cATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATtctc                                                        <  1:1120405/93‑1 (MQ=255)

                                cATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATtctc                                                        >  1:3452597/1‑93 (MQ=255)

                                 aTGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCg                                                       >  1:1620469/1‑93 (MQ=255)

                                   gATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCa                                                     >  1:1460266/1‑93 (MQ=255)

                                   gATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCa                                                     <  2:3938593/93‑1 (MQ=255)

                                   gATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCa                                                     <  1:3685527/93‑1 (MQ=255)

                                     tCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGTTTTTCTTCGTTAAACAGCTTGGATTCTCGCAag                                                   <  1:4181843/93‑1 (MQ=255)

                                     tCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAag                                                   <  1:3731767/93‑1 (MQ=255)

                                      cTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTTGATTTTCGCCaga                                                  >  2:1630611/1‑93 (MQ=255)

                                      cTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAaga                                                  >  2:2430085/1‑93 (MQ=255)

                                      cTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAaga                                                  <  2:1896214/93‑1 (MQ=255)

                                        tttttGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGc                                                <  2:3129639/93‑1 (MQ=255)

                                          tttGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAg                                              <  1:4028302/93‑1 (MQ=255)

                                          tttGGCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAg                                              <  2:3820175/93‑1 (MQ=255)

                                            tGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGc                                            <  2:2013786/93‑1 (MQ=255)

                                            tGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGc                                            <  2:4334014/93‑1 (MQ=255)

                                            tGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGc                                            <  2:2776752/93‑1 (MQ=255)

                                              tCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCtt                                          >  1:1606716/1‑93 (MQ=255)

                                              tCGAGTTATGGGAGCGATTCGGCTACTACGGCGGGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTTGATTCTCGCAAGAGGAGGCtt                                          >  2:467096/1‑93 (MQ=255)

                                               cGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCttt                                         <  1:3653048/93‑1 (MQ=255)

                                               cGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCttt                                         <  2:1874284/93‑1 (MQ=255)

                                                gAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCGAGAGCAGGCtttt                                        >  2:4140696/1‑93 (MQ=255)

                                                gAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCtttt                                        <  1:349211/93‑1 (MQ=255)

                                                gAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCtttt                                        >  2:1120640/1‑93 (MQ=255)

                                                 aGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTg                                       <  1:4311257/93‑1 (MQ=255)

                                                   ttATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTc                                     >  2:4596411/1‑93 (MQ=255)

                                                   ttATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTc                                     <  1:394214/93‑1 (MQ=255)

                                                   ttATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTc                                     >  1:3201870/1‑93 (MQ=255)

                                                     aTGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCCAGAGCAGGCTTTTGTCAc                                   >  2:1697767/1‑93 (MQ=255)

                                                      tGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACt                                  <  2:3436299/93‑1 (MQ=255)

                                                       gggAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACtt                                 >  1:3814808/1‑93 (MQ=255)

                                                        ggAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACGGCTTGGATTCTCGCAAGAGAAGGCTTTTGTCACttt                                >  2:423591/1‑93 (MQ=255)

                                                        ggAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCGGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCCCttt                                <  2:3667764/93‑1 (MQ=255)

                                                         gAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACtttt                               <  2:1177306/93‑1 (MQ=255)

                                                          aGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTg                              <  2:3029121/93‑1 (MQ=255)

                                                          aGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTg                              <  1:4613100/93‑1 (MQ=255)

                                                          aGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTg                              <  2:1360113/93‑1 (MQ=255)

                                                          aGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTg                              <  1:962320/93‑1 (MQ=255)

                                                             gATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTg                           >  1:4490143/1‑93 (MQ=255)

                                                              aTTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGc                          >  1:4059976/1‑93 (MQ=255)

                                                              aTTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGc                          >  1:4569193/1‑93 (MQ=255)

                                                              aTTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGc                          <  1:1665486/93‑1 (MQ=255)

                                                              aTTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGc                          >  2:567933/1‑93 (MQ=255)

                                                               ttCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCt                         <  1:4140828/93‑1 (MQ=255)

                                                                  ggCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCtttt                      <  1:2357744/93‑1 (MQ=255)

                                                                  ggCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCtttt                      <  2:3975533/93‑1 (MQ=255)

                                                                   gCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTtg                     <  1:863346/93‑1 (MQ=255)

                                                                     tactacGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTtgct                   >  2:735294/1‑93 (MQ=255)

                                                                     tactacGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTtgct                   >  1:4521282/1‑93 (MQ=255)

                                                                      actacGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTtgctg                  >  1:649279/1‑93 (MQ=255)

                                                                       ctacGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTTGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTtgctgc                 >  1:1714756/1‑93 (MQ=255)

                                                                       ctacGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTtgctgc                 >  1:760507/1‑93 (MQ=255)

                                                                       ctacGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTtgctgc                 <  2:2349743/93‑1 (MQ=255)

                                                                       ctacGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTtgctgc                 <  2:657086/93‑1 (MQ=255)

                                                                       ctacGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTtgctgc                 >  2:2269428/1‑93 (MQ=255)

                                                                        tacGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTgcg                >  2:1547586/1‑93 (MQ=255)

                                                                          cGGCGTGCAGGTCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCt              <  1:2060654/93‑1 (MQ=255)

                                                                            gCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTgg            >  1:2783773/1‑93 (MQ=255)

                                                                              gTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTc          <  2:3995886/93‑1 (MQ=255)

                                                                              gTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTAGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTc          <  2:1814556/93‑1 (MQ=255)

                                                                               tGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCt         >  2:1419758/1‑93 (MQ=255)

                                                                                  aGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATg      <  1:3235463/93‑1 (MQ=255)

                                                                                   gggCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATgg     >  2:513969/1‑93 (MQ=255)

                                                                                   gggCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATgg     >  1:128287/1‑93 (MQ=255)

                                                                                   gggCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATgg     <  2:2873172/93‑1 (MQ=255)

                                                                                     gCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGcc   <  1:119839/93‑1 (MQ=255)

ATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCT  >  NC_000913/3638510‑3638688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATT  >  NC_000913/3638506‑3638692

ACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTG                                                                                               <  SRR4302535.1548977/94‑1 (MQ=60)

ACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTG                                                                                               >  SRR4302535.790670/1‑94 (MQ=60)

 CCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGC                                                                                              >  SRR4302535.1667177/1‑94 (MQ=60)

  CCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCT                                                                                             <  SRR4302535.4512114/94‑1 (MQ=60)

  CCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCT                                                                                             <  SRR4302535.4381051/94‑1 (MQ=60)

   CATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTG                                                                                            >  SRR4302535.4484912/1‑94 (MQ=60)

   CATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTG                                                                                            >  SRR4302535.1639003/1‑94 (MQ=60)

    ATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGGGTGCAGGGCGTGCTGG                                                                                           >  SRR4302535.1389684/1‑94 (MQ=60)

    ATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGG                                                                                           >  SRR4302535.2669869/1‑94 (MQ=60)

    ATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGG                                                                                           >  SRR4302535.4542597/1‑94 (MQ=60)

    ATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGG                                                                                           >  SRR4302535.1859257/1‑94 (MQ=60)

     TGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGC                                                                                          <  SRR4302535.2826059/94‑1 (MQ=60)

     TGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGC                                                                                          <  SRR4302535.2278475/94‑1 (MQ=60)

     TGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGC                                                                                          <  SRR4302535.4682419/94‑1 (MQ=60)

      GGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCG                                                                                         >  SRR4302535.1621028/1‑94 (MQ=60)

      GGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCG                                                                                         >  SRR4302535.3808343/1‑94 (MQ=60)

        GGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGT                                                                                       <  SRR4302535.890329/94‑1 (MQ=60)

        GGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGT                                                                                       <  SRR4302535.4318650/94‑1 (MQ=60)

            GCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTC                                                                                   <  SRR4302535.4343355/94‑1 (MQ=60)

             CTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGGTTTCT                                                                                  >  SRR4302535.4191123/1‑94 (MQ=60)

               GCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTC                                                                                <  SRR4302535.2259282/94‑1 (MQ=60)

                cagcaaccgcggccattttttctggtcctttttggcgagtttagggaaccaaTCGGCCACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCG                                                                               <  SRR4302535.1259287/42‑1 (MQ=60)

                CAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCG                                                                               <  SRR4302535.3613824/94‑1 (MQ=60)

                 AGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGT                                                                              >  SRR4302535.1686046/1‑94 (MQ=60)

                   CAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTA                                                                            >  SRR4302535.4697713/1‑94 (MQ=60)

                   CAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTA                                                                            <  SRR4302535.4396863/94‑1 (MQ=60)

                    AACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAA                                                                           <  SRR4302535.3523967/94‑1 (MQ=60)

                     ACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAA                                                                          <  SRR4302535.1287872/94‑1 (MQ=60)

                     ACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAA                                                                          >  SRR4302535.2060970/1‑94 (MQ=60)

                      CCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAAC                                                                         >  SRR4302535.612596/1‑94 (MQ=60)

                       CTCTCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACA                                                                        <  SRR4302535.2917304/94‑1 (MQ=60)

                       CTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACA                                                                        <  SRR4302535.1026751/94‑1 (MQ=60)

                       CTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACA                                                                        <  SRR4302535.4220451/94‑1 (MQ=60)

                       CTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACA                                                                        >  SRR4302535.1747652/1‑94 (MQ=60)

                       CTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACA                                                                        <  SRR4302535.2513475/94‑1 (MQ=60)

                        TTGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAG                                                                       <  SRR4302535.621113/94‑1 (MQ=60)

                         CGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGC                                                                      <  SRR4302535.665764/94‑1 (MQ=60)

                         CGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGC                                                                      >  SRR4302535.1862529/1‑94 (MQ=60)

                         CGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGGTTTCTTCGTTAAACAGC                                                                      >  SRR4302535.3751947/1‑94 (MQ=60)

                          TCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCT                                                                     <  SRR4302535.1618704/94‑1 (MQ=60)

                            CCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTTAACAGCTTG                                                                   >  SRR4302535.3245258/1‑94 (MQ=60)

                            CCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTG                                                                   <  SRR4302535.512153/94‑1 (MQ=60)

                              ATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGA                                                                 >  SRR4302535.4671765/1‑94 (MQ=60)

                              ATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGA                                                                 >  SRR4302535.3579293/1‑94 (MQ=60)

                                TTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATT                                                               <  SRR4302535.3814541/94‑1 (MQ=60)

                                 TTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTT                                                              >  SRR4302535.2840570/1‑94 (MQ=60)

                                 TTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTC                                                              >  SRR4302535.3709066/1‑94 (MQ=60)

                                 TTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTC                                                              <  SRR4302535.1961216/94‑1 (MQ=60)

                                  TTCATGATCTTTTTTGTCGATTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGTTGGCGGTTTGGGTCGTTAAACAGCTTGGATTCT                                                             <  SRR4302535.2471064/94‑1 (MQ=60)

                                  TTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCT                                                             <  SRR4302535.2054520/94‑1 (MQ=60)

                                  TTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCT                                                             <  SRR4302535.3988477/94‑1 (MQ=60)

                                   TCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTC                                                            <  SRR4302535.2636037/94‑1 (MQ=60)

                                   TCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTC                                                            >  SRR4302535.3476594/1‑94 (MQ=60)

                                    CATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCG                                                           >  SRR4302535.2762387/1‑94 (MQ=60)

                                    CATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCG                                                           >  SRR4302535.1632160/1‑94 (MQ=60)

                                    CATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCG                                                           <  SRR4302535.1128394/94‑1 (MQ=60)

                                    CATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCG                                                           <  SRR4302535.2022391/94‑1 (MQ=60)

                                    CATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCG                                                           <  SRR4302535.4216748/94‑1 (MQ=60)

                                     ATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGC                                                          >  SRR4302535.4182826/1‑94 (MQ=60)

                                      TGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCA                                                         >  SRR4302535.1470730/1‑94 (MQ=60)

                                      TGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCA                                                         >  SRR4302535.4614229/1‑94 (MQ=60)

                                       GATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAA                                                        >  SRR4302535.2478362/1‑94 (MQ=60)

                                       GATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAA                                                        <  SRR4302535.3711025/94‑1 (MQ=60)

                                         TCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGTTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGA                                                      <  SRR4302535.4210458/94‑1 (MQ=60)

                                         TCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGA                                                      <  SRR4302535.1645310/94‑1 (MQ=60)

                                         TCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGA                                                      <  SRR4302535.3757606/94‑1 (MQ=60)

                                          CTTTTTTGTCGAGTTATGGGAGAGATTCGGCTACTACGGCGTGCAGGGCGTGCTAGCGGATTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAG                                                     >  SRR4302535.1272619/1‑94 (MQ=60)

                                              TTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGG                                                 <  SRR4302535.4055864/94‑1 (MQ=60)

                                              TTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGG                                                 <  SRR4302535.1803430/94‑1 (MQ=60)

                                              TTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGG                                                 <  SRR4302535.4547620/94‑1 (MQ=60)

                                               TTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGC                                                >  SRR4302535.1132999/1‑94 (MQ=60)

                                               TTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGC                                                <  SRR4302535.4355503/94‑1 (MQ=60)

                                               TTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGC                                                <  SRR4302535.451124/94‑1 (MQ=60)

                                                 GTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTT                                              >  SRR4302535.1618309/1‑94 (MQ=60)

                                                 GTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTT                                              <  SRR4302535.3779051/94‑1 (MQ=60)

                                                   CGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTT                                            >  SRR4302535.4260090/1‑94 (MQ=60)

                                                   CGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTT                                            >  SRR4302535.478085/1‑94 (MQ=60)

                                                   CGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTT                                            <  SRR4302535.1108664/94‑1 (MQ=60)

                                                   CGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTT                                            <  SRR4302535.3678342/94‑1 (MQ=60)

                                                    GAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTG                                           <  SRR4302535.351615/94‑1 (MQ=60)

                                                    GAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTCAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTG                                           <  SRR4302535.4599755/94‑1 (MQ=60)

                                                     AGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGT                                          <  SRR4302535.4340750/94‑1 (MQ=60)

                                                      GTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTC                                         >  SRR4302535.3224037/1‑94 (MQ=60)

                                                      GTGATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTC                                         <  SRR4302535.4138552/94‑1 (MQ=60)

                                                       TTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCA                                        <  SRR4302535.396967/94‑1 (MQ=60)

                                                          TGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTT                                     >  SRR4302535.3841130/1‑94 (MQ=60)

                                                          TGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTT                                     >  SRR4302535.731578/1‑94 (MQ=60)

                                                            GGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTT                                   <  SRR4302535.4064185/94‑1 (MQ=60)

                                                            GGAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTT                                   <  SRR4302535.2370075/94‑1 (MQ=60)

                                                             GAGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTG                                  <  SRR4302535.810403/94‑1 (MQ=60)

                                                              AGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGG                                 <  SRR4302535.969156/94‑1 (MQ=60)

                                                              AGCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGG                                 <  SRR4302535.4644440/94‑1 (MQ=60)

                                                               GCGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTTGT                                >  SRR4302535.2223248/1‑94 (MQ=60)

                                                                CGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTG                               <  SRR4302535.2911073/94‑1 (MQ=60)

                                                                CGATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTG                               >  SRR4302535.4520964/1‑94 (MQ=60)

                                                                 GATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGC                              >  SRR4302535.629570/1‑94 (MQ=60)

                                                                 GATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGC                              >  SRR4302535.4087764/1‑94 (MQ=60)

                                                                 GATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGC                              >  SRR4302535.1954843/1‑94 (MQ=60)

                                                                 GATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGC                              >  SRR4302535.4600353/1‑94 (MQ=60)

                                                                 GATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAACAGGCTTTTGTCACTTTTTGTGC                              >  SRR4302535.3988451/1‑94 (MQ=60)

                                                                  ATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCT                             <  SRR4302535.1677537/94‑1 (MQ=60)

                                                                  ATTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCT                             >  SRR4302535.3968541/1‑94 (MQ=60)

                                                                   TTCGGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTT                            <  SRR4302535.4169180/94‑1 (MQ=60)

                                                                      GGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTG                         <  SRR4302535.1361778/94‑1 (MQ=60)

                                                                      GGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTG                         <  SRR4302535.3072414/94‑1 (MQ=60)

                                                                      GGCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTG                         <  SRR4302535.2374655/94‑1 (MQ=60)

                                                                       GCTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGC                        <  SRR4302535.869447/94‑1 (MQ=60)

                                                                        CTACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCT                       >  SRR4302535.4552266/1‑94 (MQ=60)

                                                                         TACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTG                      >  SRR4302535.653805/1‑94 (MQ=60)

                                                                         TACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTG                      >  SRR4302535.3096528/1‑94 (MQ=60)

                                                                          ACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTTGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGC                     >  SRR4302535.1727156/1‑94 (MQ=60)

                                                                          ACTACGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGC                     >  SRR4302535.765865/1‑94 (MQ=60)

                                                                              CGGCGTGCAGGTCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTG                 <  SRR4302535.2075504/94‑1 (MQ=60)

                                                                              CGGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTG                 <  SRR4302535.1345782/94‑1 (MQ=60)

                                                                               GGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGG                <  SRR4302535.3497904/94‑1 (MQ=60)

                                                                               GGCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGG                >  SRR4302535.2803581/1‑94 (MQ=60)

                                                                                GCGTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAACCAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGT               <  SRR4302535.93900/94‑1 (MQ=60)

                                                                                 CGTGCAGGGCGGGCTGGCGGTTTTCTTCGTTAAACAGCTTGAATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGGGCTGGTC              >  SRR4302535.563498/1‑94 (MQ=60)

                                                                                  GTGCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCT             >  SRR4302535.1745359/1‑94 (MQ=60)

                                                                                    GCAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTAT           <  SRR4302535.4410778/94‑1 (MQ=60)

                                                                                     CAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATG          >  SRR4302535.3282255/1‑94 (MQ=60)

                                                                                     CAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATG          >  SRR4302535.889090/1‑94 (MQ=60)

                                                                                     CAGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATG          <  SRR4302535.1628622/94‑1 (MQ=60)

                                                                                      AGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGG         >  SRR4302535.129192/1‑94 (MQ=60)

                                                                                      AGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGG         >  SRR4302535.2642201/1‑94 (MQ=60)

                                                                                      AGGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGG         <  SRR4302535.3257919/94‑1 (MQ=60)

                                                                                       GGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGC        >  SRR4302535.1587186/1‑94 (MQ=60)

                                                                                       GGGCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGC        <  SRR4302535.4328668/94‑1 (MQ=60)

                                                                                         GCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCT      <  SRR4302535.120678/94‑1 (MQ=60)

                                                                                         GCGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCT      <  SRR4302535.3735529/94‑1 (MQ=60)

                                                                                          CGTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTC     <  SRR4302535.3499907/94‑1 (MQ=60)

                                                                                           GTGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCA    >  SRR4302535.4612382/1‑94 (MQ=60)

                                                                                            TGCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCAT   <  SRR4302535.1578443/94‑1 (MQ=60)

                                                                                             GCTGGCGTTTTTCTTCGTTAAACAGCTTGCATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATT  <  SRR4302535.576858/94‑1 (MQ=60)

                                                                                             GCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATT  >  SRR4302535.2484340/1‑94 (MQ=60)

                                                                                             GCTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATT  <  SRR4302535.2782017/94‑1 (MQ=60)

ACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATT  >  NC_000913/3638506‑3638692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`