Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,638,755	A→G	A88A (GCA→GCG)	yhiP →	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,638,755	0	A	G	100.0%	716.2 / NA	227	A88A (GCA→GCG)	yhiP	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (111/116); total (111/116)

Only 100 of 231 total aligned reads displayed.

TTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGG  >  NC_000913/3638665‑3638844

ttttGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCt                                                                                         <  2:4337310/93‑1 (MQ=255)

ttttGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGAACAAACGCACCATTGTTCTTGGAGCGCt                                                                                         >  1:929598/1‑93 (MQ=255)

  ttGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTtg                                                                                       <  2:3670284/93‑1 (MQ=255)

  ttGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTtg                                                                                       <  2:1849203/93‑1 (MQ=255)

   tgctgcGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTtgt                                                                                      <  2:849375/93‑1 (MQ=255)

   tgctgcGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTtgt                                                                                      <  2:3073022/93‑1 (MQ=255)

     gtgcGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGc                                                                                    <  1:882257/92‑1 (MQ=255)

     ctgcGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGc                                                                                    >  2:3941354/1‑93 (MQ=255)

     ctgcGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGc                                                                                    <  1:587833/93‑1 (MQ=255)

        cgcTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTgg                                                                                 <  1:1803522/93‑1 (MQ=255)

         gcTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGc                                                                                <  1:199663/93‑1 (MQ=255)

         gcTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGc                                                                                <  1:3763134/93‑1 (MQ=255)

          cTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCg                                                                               >  1:996124/1‑93 (MQ=255)

          cTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCg                                                                               <  2:1582950/93‑1 (MQ=255)

            ggTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGAt                                                                             <  2:737801/93‑1 (MQ=255)

            ggTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGAt                                                                             <  2:3979797/93‑1 (MQ=255)

            ggTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTCGGAGCGCTTGTGCTGGCGAt                                                                             <  2:2666067/93‑1 (MQ=255)

             gTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGAtt                                                                            <  1:1390383/93‑1 (MQ=255)

              tCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTg                                                                           >  1:4331455/1‑93 (MQ=255)

              tCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTg                                                                           <  2:2508400/93‑1 (MQ=255)

               cTATGGCCTCGTTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCCTTGTTCTTGGAGCGCTTGTGCTGGCGAGTgg                                                                          >  2:2868679/1‑93 (MQ=255)

               cTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTgg                                                                          <  1:1248820/93‑1 (MQ=255)

                tATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGc                                                                         <  1:2368675/93‑1 (MQ=255)

                tATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGc                                                                         >  2:3456652/1‑93 (MQ=255)

                tATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGc                                                                         >  2:4110792/1‑93 (MQ=255)

                 aTGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCt                                                                        <  1:4045943/93‑1 (MQ=255)

                 aTGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCt                                                                        <  1:3614691/93‑1 (MQ=255)

                    gCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACt                                                                     >  2:1163349/1‑93 (MQ=255)

                    gCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACt                                                                     >  1:1449483/1‑93 (MQ=255)

                    gCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACt                                                                     >  1:2122268/1‑93 (MQ=255)

                      cTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTc                                                                   <  1:2026413/93‑1 (MQ=255)

                      cTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTc                                                                   <  1:381328/93‑1 (MQ=255)

                       tCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCa                                                                  <  2:3222918/93‑1 (MQ=255)

                        cATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCAt                                                                 >  1:1479049/1‑93 (MQ=255)

                        cATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCAt                                                                 <  1:4375380/93‑1 (MQ=255)

                        cATTTCCATTGGCGGCTATGTCAGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCAt                                                                 <  1:4545853/93‑1 (MQ=255)

                         aTTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATg                                                                >  1:2900256/1‑93 (MQ=255)

                          tttCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGa                                                               <  1:756019/93‑1 (MQ=255)

                          tttCCATTGGCGGCTATGTAGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGa                                                               >  1:3170987/1‑93 (MQ=255)

                           ttCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGAc                                                              >  2:4546985/1‑93 (MQ=255)

                           ttCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGAc                                                              <  2:3232041/93‑1 (MQ=255)

                             ccATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCg                                                            >  1:527062/1‑93 (MQ=255)

                             ccATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCg                                                            <  1:4033715/93‑1 (MQ=255)

                               aTTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGc                                                          >  2:1497149/1‑93 (MQ=255)

                               aTTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGc                                                          <  1:191809/93‑1 (MQ=255)

                               aTTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGc                                                          >  2:4631710/1‑93 (MQ=255)

                                ttGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGCCCGGCa                                                         <  2:4176512/93‑1 (MQ=255)

                                ttGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCa                                                         >  1:465512/1‑93 (MQ=255)

                                  ggcggcTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATg                                                       >  2:2112569/1‑93 (MQ=255)

                                  ggcggcTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATg                                                       <  1:735294/93‑1 (MQ=255)

                                  ggcggcTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATg                                                       <  1:2762481/93‑1 (MQ=255)

                                    cggcTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTc                                                     <  2:2227463/93‑1 (MQ=255)

                                      gcTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGc                                                   >  2:1431686/1‑93 (MQ=255)

                                      gcTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGc                                                   <  1:3389576/93‑1 (MQ=255)

                                       cTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCt                                                  >  1:1969344/1‑93 (MQ=255)

                                           gTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACtt                                              <  2:4671790/93‑1 (MQ=255)

                                            tCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTa                                             >  2:4022430/1‑93 (MQ=255)

                                             cGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTaa                                            <  1:3891639/93‑1 (MQ=255)

                                             cGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTaa                                            <  2:3726133/93‑1 (MQ=255)

                                                cGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGcc                                         <  2:2742837/93‑1 (MQ=255)

                                                cGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGcc                                         <  2:2783773/93‑1 (MQ=255)

                                                 gACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGcct                                        >  1:2414908/1‑93 (MQ=255)

                                                  accaccTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGcctg                                       >  1:2671203/1‑93 (MQ=255)

                                                   ccaccTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGcctga                                      >  2:2365568/1‑93 (MQ=255)

                                                    caccTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGcctgac                                     >  1:808940/1‑93 (MQ=255)

                                                        tgctgGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGcctgacctga                                 >  1:559539/1‑93 (MQ=255)

                                                          ctgGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGAtt                               >  1:4154378/1‑93 (MQ=255)

                                                               gACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCAt                          <  2:4454364/93‑1 (MQ=255)

                                                                aCCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATc                         <  2:2046233/93‑1 (MQ=255)

                                                                aCCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCACTACTTAAGCCTGACCTGATTTTCATc                         <  1:161008/93‑1 (MQ=255)

                                                                 ccAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCg                        >  2:3579264/1‑93 (MQ=255)

                                                                  cAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGc                       <  2:625222/93‑1 (MQ=255)

                                                                   aaaCGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGcc                      >  1:2330555/1‑93 (MQ=255)

                                                                    aaCGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGccc                     <  1:1120640/93‑1 (MQ=255)

                                                                     aCGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCt                    <  1:3228120/93‑1 (MQ=255)

                                                                     aCGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCt                    >  1:1211572/1‑93 (MQ=255)

                                                                      cGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTg                   <  2:4445416/93‑1 (MQ=255)

                                                                       gCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTgg                  >  2:2154662/1‑93 (MQ=255)

                                                                       gCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTgg                  <  2:1738976/93‑1 (MQ=255)

                                                                       gCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTgg                  >  2:1275000/1‑93 (MQ=255)

                                                                       gCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTgg                  >  1:4065610/1‑93 (MQ=255)

                                                                        cACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTggg                 >  2:2600398/1‑93 (MQ=255)

                                                                         gcaaTTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGCCCTGATTTTCATCGCCCTgggg                <  1:3030651/90‑1 (MQ=255)

                                                                         aCCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTgggg                >  2:2589857/1‑93 (MQ=255)

                                                                         aCCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTgggg                >  2:1718813/1‑93 (MQ=255)

                                                                          ccATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGa               <  2:1655205/93‑1 (MQ=255)

                                                                           cgttGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGAc              <  1:2207770/91‑1 (MQ=255)

                                                                             ttGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTa            >  2:382288/1‑93 (MQ=255)

                                                                             ttGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTa            <  1:2269428/93‑1 (MQ=255)

                                                                             ttGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTa            >  2:2613815/1‑93 (MQ=255)

                                                                               gTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATc          >  2:1093087/1‑93 (MQ=255)

                                                                                ttCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCg         >  2:4039363/1‑93 (MQ=255)

                                                                                ttCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCg         <  1:3286145/93‑1 (MQ=255)

                                                                                 tCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGc        <  1:4596411/93‑1 (MQ=255)

                                                                                 tCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGc        <  2:4231136/93‑1 (MQ=255)

                                                                                 tCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGc        >  1:208258/1‑93 (MQ=255)

                                                                                   ttGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCGCTGGGGACTATCGCTg      >  2:1201188/1‑93 (MQ=255)

                                                                                   ttGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTg      >  1:1067665/1‑93 (MQ=255)

                                                                                   ttGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTg      <  1:2533624/93‑1 (MQ=255)

                                                                                   ttGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTg      >  2:752989/1‑93 (MQ=255)

TTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGG  >  NC_000913/3638665‑3638844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAAC  >  NC_000913/3638662‑3638848

TGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCG                                                                                               >  SRR4302535.1011124/1‑94 (MQ=60)

 GCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGC                                                                                              <  SRR4302535.3371552/94‑1 (MQ=60)

 GCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGC                                                                                              >  SRR4302535.2502498/1‑94 (MQ=60)

  CTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGAACAAACGCACCATTGTTCTTGGAGCGCT                                                                                             >  SRR4302535.936175/1‑94 (MQ=60)

      TGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTG                                                                                         <  SRR4302535.1966652/94‑1 (MQ=60)

       GCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGGACCATTGTTCTTGGAGCGCTTGTGC                                                                                        >  SRR4302535.745284/1‑94 (MQ=60)

       GCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGC                                                                                        <  SRR4302535.762316/94‑1 (MQ=60)

        GTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCT                                                                                       <  SRR4302535.888505/94‑1 (MQ=60)

        CTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCT                                                                                       <  SRR4302535.591953/94‑1 (MQ=60)

         TGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTG                                                                                      >  SRR4302535.2162980/1‑94 (MQ=60)

           CGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGC                                                                                    <  SRR4302535.1816556/94‑1 (MQ=60)

            GCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCG                                                                                   <  SRR4302535.201031/94‑1 (MQ=60)

            GCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCG                                                                                   <  SRR4302535.3789132/94‑1 (MQ=60)

            GCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCG                                                                                   >  SRR4302535.1003199/1‑94 (MQ=60)

                GTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTG                                                                               <  SRR4302535.1400305/94‑1 (MQ=60)

                GTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTG                                                                               >  SRR4302535.4361078/1‑94 (MQ=60)

                 TCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGG                                                                              <  SRR4302535.2447593/94‑1 (MQ=60)

                 TCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGG                                                                              >  SRR4302535.4070725/1‑94 (MQ=60)

                 TCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCGTGTGCTGGCGATTGG                                                                              >  SRR4302535.3724634/1‑94 (MQ=60)

                  CTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGC                                                                             <  SRR4302535.1257734/94‑1 (MQ=60)

                   TATGGCCTCATTTCCATTGGCGTCTATGTCTGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCT                                                                            <  SRR4302535.895213/94‑1 (MQ=60)

                   TATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCT                                                                            <  SRR4302535.2385681/94‑1 (MQ=60)

                    ATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTA                                                                           <  SRR4302535.3639749/94‑1 (MQ=60)

                    ATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTA                                                                           <  SRR4302535.4073639/94‑1 (MQ=60)

                      GGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACT                                                                         >  SRR4302535.2137570/1‑94 (MQ=60)

                      GGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACT                                                                         >  SRR4302535.2048018/1‑94 (MQ=60)

                      GGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACT                                                                         >  SRR4302535.1459848/1‑94 (MQ=60)

                        CCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTC                                                                       >  SRR4302535.933500/1‑94 (MQ=60)

                         CTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCA                                                                      <  SRR4302535.383965/94‑1 (MQ=60)

                         CTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCA                                                                      <  SRR4302535.4148194/94‑1 (MQ=60)

                         CTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCA                                                                      <  SRR4302535.2041015/94‑1 (MQ=60)

                         CTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCA                                                                      >  SRR4302535.4541282/1‑94 (MQ=60)

                          TCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCAT                                                                     >  SRR4302535.1489633/1‑94 (MQ=60)

                          TCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCAT                                                                     >  SRR4302535.4394733/1‑94 (MQ=60)

                          TCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCAT                                                                     <  SRR4302535.4472685/94‑1 (MQ=60)

                          TCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCAT                                                                     >  SRR4302535.3819904/1‑94 (MQ=60)

                          TCATTTCCATTGGCGGCTATGTCGGCGAACACCTGCTGGGGACCAAACGCACAATTGTTCTTGGAACGCCTGTGCTAGCGATTGGCTACctcct                                                                     >  SRR4302535.2557605/1‑89 (MQ=60)

                           CATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATG                                                                    >  SRR4302535.2920759/1‑94 (MQ=60)

                           CATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATG                                                                    >  SRR4302535.2052616/1‑94 (MQ=60)

                           CATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATG                                                                    <  SRR4302535.4405319/94‑1 (MQ=60)

                           CATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATG                                                                    >  SRR4302535.2004814/1‑94 (MQ=60)

                           CATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTCCATG                                                                    >  SRR4302535.3660341/1‑94 (MQ=60)

                           CATTTCCATTGGCGGCTATGTCAGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATG                                                                    <  SRR4302535.4576937/94‑1 (MQ=60)

                            ATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTTGAGCGCCTGTGGTGGCGATTCGCTACTTCATGA                                                                   >  SRR4302535.2460372/1‑94 (MQ=60)

                            ATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGA                                                                   <  SRR4302535.1429895/94‑1 (MQ=60)

                            ATTTCCATTGGCGGCTATGTAGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGA                                                                   >  SRR4302535.3192945/1‑94 (MQ=60)

                             TTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGAC                                                                  <  SRR4302535.761343/94‑1 (MQ=60)

                              TTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACC                                                                 >  SRR4302535.741769/1‑94 (MQ=60)

                               TCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCG                                                                >  SRR4302535.530743/1‑94 (MQ=60)

                               TCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCG                                                                >  SRR4302535.3584014/1‑94 (MQ=60)

                                CCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGG                                                               <  SRR4302535.4061316/94‑1 (MQ=60)

                                CCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGG                                                               >  SRR4302535.53202/1‑94 (MQ=60)

                                  ATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCA                                                             >  SRR4302535.468768/1‑94 (MQ=60)

                                  ATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCA                                                             <  SRR4302535.4013625/94‑1 (MQ=60)

                                  ATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCA                                                             <  SRR4302535.193134/94‑1 (MQ=60)

                                    TGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATG                                                           >  SRR4302535.3088112/1‑94 (MQ=60)

                                    TGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATG                                                           >  SRR4302535.1101805/1‑94 (MQ=60)

                                     GGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGT                                                          <  SRR4302535.2782165/94‑1 (MQ=60)

                                     GGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGT                                                          <  SRR4302535.740463/94‑1 (MQ=60)

                                        GGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGC                                                       >  SRR4302535.2677803/1‑94 (MQ=60)

                                        GGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGAATGTCGC                                                       >  SRR4302535.189079/1‑94 (MQ=60)

                                         GCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCT                                                      >  SRR4302535.1983532/1‑94 (MQ=60)

                                         GCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCT                                                      <  SRR4302535.3413156/94‑1 (MQ=60)

                                          CTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTC                                                     >  SRR4302535.2338844/1‑94 (MQ=60)

                                          CTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTA                                                     <  SRR4302535.2019801/94‑1 (MQ=60)

                                           TATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTAC                                                    <  SRR4302535.1226703/94‑1 (MQ=60)

                                            ATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACT                                                   >  SRR4302535.1212312/1‑94 (MQ=60)

                                              GTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTA                                                 >  SRR4302535.846833/1‑94 (MQ=60)

                                               TCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAA                                                <  SRR4302535.57027/94‑1 (MQ=60)

                                                cgtctACCACGTGCTGGGGACCAAACGCACCATTGTTCGTGGAGCGCTTGTGCTGGCGATTGGCTACTTCAGGACCGGCATGTCGCTACTTAAG                                               <  SRR4302535.336105/89‑1 (MQ=60)

                                                CGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAG                                               <  SRR4302535.3918323/94‑1 (MQ=60)

                                                CGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAG                                               <  SRR4302535.2234022/94‑1 (MQ=60)

                                                CGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAG                                               >  SRR4302535.2705085/1‑94 (MQ=60)

                                                 GGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGC                                              >  SRR4302535.645435/1‑94 (MQ=60)

                                                  GCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCC                                             <  SRR4302535.1935959/94‑1 (MQ=60)

                                                   CGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCT                                            >  SRR4302535.2432292/1‑94 (MQ=60)

                                                    GACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTG                                           >  SRR4302535.2690314/1‑94 (MQ=60)

                                                    GACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTG                                           <  SRR4302535.2821025/94‑1 (MQ=60)

                                                      CCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGAC                                         >  SRR4302535.814601/1‑94 (MQ=60)

                                                       CACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACC                                        <  SRR4302535.3221607/94‑1 (MQ=60)

                                                        ACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCT                                       <  SRR4302535.4012529/94‑1 (MQ=60)

                                                         CCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATtctgctacttacgtcgcacctg                                      >  SRR4302535.310424/1‑72 (MQ=60)

                                                          CTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGA                                     >  SRR4302535.563451/1‑94 (MQ=60)

                                                            GCTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATT                                   >  SRR4302535.4182820/1‑94 (MQ=60)

                                                             CTGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTT                                  >  SRR4302535.1485850/1‑94 (MQ=60)

                                                              TGGGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTT                                 <  SRR4302535.963816/94‑1 (MQ=60)

                                                                GGGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCA                               >  SRR4302535.2413291/1‑94 (MQ=60)

                                                                 GGACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCAT                              <  SRR4302535.1528437/94‑1 (MQ=60)

                                                                   ACCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCACTACTTAAGCCTGACCTGATTTTCATCG                            <  SRR4302535.162136/94‑1 (MQ=60)

                                                                    CCAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGAACGGAATGTCGCTACTTAAGCCTGACCTGATTTTCATCGC                           >  SRR4302535.1513736/1‑94 (MQ=60)

                                                                     CAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCC                          >  SRR4302535.458888/1‑94 (MQ=60)

                                                                     CAAACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCC                          >  SRR4302535.2347224/1‑94 (MQ=60)

                                                                       AACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCT                        >  SRR4302535.1220270/1‑94 (MQ=60)

                                                                       AACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCT                        >  SRR4302535.2307946/1‑94 (MQ=60)

                                                                       AACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCT                        <  SRR4302535.4088817/94‑1 (MQ=60)

                                                                       AACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCT                        <  SRR4302535.1128632/94‑1 (MQ=60)

                                                                        ACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTG                       <  SRR4302535.3214114/94‑1 (MQ=60)

                                                                        ACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTG                       <  SRR4302535.2099002/94‑1 (MQ=60)

                                                                        ACGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTG                       <  SRR4302535.3250491/94‑1 (MQ=60)

                                                                         CGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGG                      >  SRR4302535.3361755/1‑94 (MQ=60)

                                                                         CGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGG                      >  SRR4302535.4290332/1‑94 (MQ=60)

                                                                         CGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGG                      <  SRR4302535.4109694/94‑1 (MQ=60)

                                                                         CGCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGG                      >  SRR4302535.4093429/1‑94 (MQ=60)

                                                                          GCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGG                     <  SRR4302535.526384/94‑1 (MQ=60)

                                                                          GCACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGG                     >  SRR4302535.3253409/1‑94 (MQ=60)

                                                                           CACCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGG                    <  SRR4302535.1710038/94‑1 (MQ=60)

                                                                            gcaATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGCCCTGATTTTCATCGCCCTGGGGA                   <  SRR4302535.3051869/91‑1 (MQ=60)

                                                                             CCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGAC                  >  SRR4302535.2352426/1‑94 (MQ=60)

                                                                             CCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGAC                  <  SRR4302535.386112/94‑1 (MQ=60)

                                                                             CCATTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGAC                  <  SRR4302535.470367/94‑1 (MQ=60)

                                                                              CGTTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACT                 <  SRR4302535.2223494/94‑1 (MQ=60)

                                                                                TTGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTAT               <  SRR4302535.2285610/94‑1 (MQ=60)

                                                                                 TGTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATC              <  SRR4302535.4643415/94‑1 (MQ=60)

                                                                                  GTTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCG             <  SRR4302535.133449/94‑1 (MQ=60)

                                                                                   TTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGC            >  SRR4302535.2860273/1‑94 (MQ=60)

                                                                                   TTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGC            <  SRR4302535.3308986/94‑1 (MQ=60)

                                                                                   TTCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGC            >  SRR4302535.209688/1‑94 (MQ=60)

                                                                                    TCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCT           <  SRR4302535.4627684/94‑1 (MQ=60)

                                                                                    TCTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCT           <  SRR4302535.2959380/94‑1 (MQ=60)

                                                                                     CTTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTG          >  SRR4302535.1075259/1‑94 (MQ=60)

                                                                                      TTGGAGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGT         <  SRR4302535.2551874/94‑1 (MQ=60)

                                                                                          AGCGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGT     <  SRR4302535.1274337/94‑1 (MQ=60)

                                                                                            CGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAA   >  SRR4302535.1515446/1‑94 (MQ=60)

                                                                                            CGCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAA   >  SRR4302535.3049036/1‑94 (MQ=60)

                                                                                             GCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAAC  >  SRR4302535.3279831/1‑94 (MQ=60)

                                                                                             GCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAAC  >  SRR4302535.3290493/1‑94 (MQ=60)

                                                                                             GCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAAC  >  SRR4302535.1294257/1‑94 (MQ=60)

                                                                                             GCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAAC  >  SRR4302535.884428/1‑94 (MQ=60)

                                                                                             GCTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAAC  <  SRR4302535.1642385/94‑1 (MQ=60)

TGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAAC  >  NC_000913/3638662‑3638848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`