Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,683,091	A→G	V42A (GTC→GCC)	yhjK ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,683,091	0	A	G	100.0%	700.9 / NA	219	V42A (GTC→GCC)	yhjK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (108/111); total (108/111)

Only 100 of 225 total aligned reads displayed.

TGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGACAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAA  >  NC_000913/3683002‑3683180

tGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCag                                                                                        >  2:2388755/1‑93 (MQ=255)

  aCCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCagag                                                                                      <  1:1949476/93‑1 (MQ=255)

  aCCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCagag                                                                                      >  2:773043/1‑93 (MQ=255)

   cctcGCCGGCTGGTTTAATGCTGGCTAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAgagc                                                                                     <  2:3334902/90‑1 (MQ=255)

    cACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAgagcg                                                                                    >  1:2204345/1‑93 (MQ=255)

      cGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAgagcgag                                                                                  >  2:1830390/1‑93 (MQ=255)

        ccTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCa                                                                                <  1:1316169/93‑1 (MQ=255)

             cGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCt                                                                           >  1:1447265/1‑93 (MQ=255)

             cGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCt                                                                           >  1:2752809/1‑93 (MQ=255)

             cGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCt                                                                           <  1:3924723/93‑1 (MQ=255)

              ggTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCtt                                                                          >  1:1368277/1‑93 (MQ=255)

              ggTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCtt                                                                          >  1:2998903/1‑93 (MQ=255)

              ggTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCtt                                                                          >  1:208544/1‑93 (MQ=255)

              ggTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCtt                                                                          >  2:2195123/1‑93 (MQ=255)

               gTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCttt                                                                         <  2:293091/93‑1 (MQ=255)

                tttAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTc                                                                        >  2:1477663/1‑93 (MQ=255)

                tttAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTc                                                                        >  1:277919/1‑93 (MQ=255)

                ttgaaTGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTc                                                                        <  2:1374675/90‑1 (MQ=255)

                 ttAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTcc                                                                       >  1:57820/1‑93 (MQ=255)

                     tGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGtt                                                                   <  1:450614/93‑1 (MQ=255)

                     tGCTGGCAACAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGtt                                                                   <  2:1563771/93‑1 (MQ=255)

                         ggCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGt                                                               <  1:2732068/93‑1 (MQ=255)

                           cAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAg                                                             <  1:3065801/93‑1 (MQ=255)

                           cAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAg                                                             <  1:3343791/93‑1 (MQ=255)

                             aGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGcc                                                           >  2:4204734/1‑93 (MQ=255)

                              gAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCg                                                          <  1:2871733/93‑1 (MQ=255)

                              gAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCg                                                          >  2:2072570/1‑93 (MQ=255)

                                 tAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCgtgt                                                       <  1:1973198/93‑1 (MQ=255)

                                  aGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGtt                                                      <  1:679184/93‑1 (MQ=255)

                                   gCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTta                                                     <  2:3372721/93‑1 (MQ=255)

                                   gCTTCCCCTCCGGGAATATCGCCTTACAAAATAGCTGAAGATAAGCCCTCGCGGGCAGAGCGAGCAATGCTTCCCAGTTGCGTAGCCGTGTta                                                     <  2:1233830/93‑1 (MQ=255)

                                     ttCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTtata                                                   <  1:1006485/93‑1 (MQ=255)

                                         gCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGa                                               >  1:282613/1‑93 (MQ=255)

                                         gCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGa                                               >  1:1631375/1‑93 (MQ=255)

                                          cTTCGGTAATATCGCTTTTCAAAATAGCTGAAGATAGGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGAt                                              <  2:1849734/93‑1 (MQ=255)

                                           ttCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGAtt                                             >  2:228061/1‑93 (MQ=255)

                                            tCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTc                                            <  2:393322/93‑1 (MQ=255)

                                            tCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTc                                            <  1:2534280/93‑1 (MQ=255)

                                            tCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTc                                            <  1:1187158/93‑1 (MQ=255)

                                             cGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTct                                           >  2:1056182/1‑93 (MQ=255)

                                             cGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTct                                           <  1:2327301/93‑1 (MQ=255)

                                               ggAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgc                                         <  2:1613649/93‑1 (MQ=255)

                                               ggAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgc                                         <  2:3199445/93‑1 (MQ=255)

                                               ggAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgc                                         <  1:4458440/93‑1 (MQ=255)

                                                 aaTATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgctg                                       <  2:1686326/93‑1 (MQ=255)

                                                   tatCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGa                                     >  1:3208619/1‑93 (MQ=255)

                                                    atCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAc                                    >  1:1053991/1‑93 (MQ=255)

                                                    atCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAc                                    >  1:1915820/1‑93 (MQ=255)

                                                      cGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCa                                  <  1:3107888/93‑1 (MQ=255)

                                                      cGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCa                                  <  2:2847219/93‑1 (MQ=255)

                                                        cttttCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGa                                <  2:4089190/91‑1 (MQ=255)

                                                        ccTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGa                                >  1:2125117/1‑93 (MQ=255)

                                                         cTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGAt                               <  2:720980/93‑1 (MQ=255)

                                                         cTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGAt                               <  2:4347891/93‑1 (MQ=255)

                                                         cTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGAt                               >  2:3856140/1‑93 (MQ=255)

                                                         cTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGAt                               >  1:2437710/1‑93 (MQ=255)

                                                          tttCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATg                              >  1:2356957/1‑93 (MQ=255)

                                                            tCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGa                            >  1:3627563/1‑93 (MQ=255)

                                                             cAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGaa                           <  1:3184739/93‑1 (MQ=255)

                                                              aaaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAc                          <  2:2081635/93‑1 (MQ=255)

                                                              aaaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAc                          <  1:4222999/93‑1 (MQ=255)

                                                              aaaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAc                          >  2:4144892/1‑93 (MQ=255)

                                                              aaaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAc                          <  2:459380/93‑1 (MQ=255)

                                                               aaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACa                         >  1:2109117/1‑93 (MQ=255)

                                                               aaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACa                         <  2:349529/93‑1 (MQ=255)

                                                               aaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACa                         <  2:816737/93‑1 (MQ=255)

                                                               aaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACa                         <  1:3699435/93‑1 (MQ=255)

                                                                aaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAg                        >  1:3970894/1‑93 (MQ=255)

                                                                 aTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGc                       <  1:383093/93‑1 (MQ=255)

                                                                   aGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCaa                     <  1:1487847/93‑1 (MQ=255)

                                                                    gCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCaaa                    >  2:2687121/1‑93 (MQ=255)

                                                                     cTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCaaaa                   <  2:255837/93‑1 (MQ=255)

                                                                     cTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCaaaa                   >  1:4320174/1‑93 (MQ=255)

                                                                     cTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCaaaa                   <  2:3251317/93‑1 (MQ=255)

                                                                      tGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAc                  <  2:4683548/93‑1 (MQ=255)

                                                                      tGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAc                  >  2:448688/1‑93 (MQ=255)

                                                                      tGAAGATAAGGGTTCGAGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGCACAGATGGAACAGCAAAAc                  >  2:1984854/1‑93 (MQ=255)

                                                                       gAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACg                 <  1:4263675/93‑1 (MQ=255)

                                                                       gAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACg                 >  1:4393024/1‑93 (MQ=255)

                                                                        aaGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACgg                >  2:2991433/1‑93 (MQ=255)

                                                                        aaGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACgg                <  1:529877/93‑1 (MQ=255)

                                                                         aGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGt               <  1:3533441/93‑1 (MQ=255)

                                                                         aGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGt               <  1:3249117/93‑1 (MQ=255)

                                                                          gATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTg              >  2:3531480/1‑93 (MQ=255)

                                                                           aTAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGc             >  2:1591716/1‑93 (MQ=255)

                                                                           aTAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGc             >  1:1503460/1‑93 (MQ=255)

                                                                           aTAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGc             >  1:3783147/1‑93 (MQ=255)

                                                                           aTAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGc             >  2:3107614/1‑93 (MQ=255)

                                                                           aTAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGc             <  1:2649015/93‑1 (MQ=255)

                                                                            tAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCa            <  2:1117771/93‑1 (MQ=255)

                                                                             aaGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCaa           >  2:2797550/1‑93 (MQ=255)

                                                                              aGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCaaa          >  1:4627544/1‑93 (MQ=255)

                                                                                ggTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCaaaaa        <  2:732190/93‑1 (MQ=255)

                                                                                  ttCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAAt      >  2:3233451/1‑93 (MQ=255)

                                                                                    cgcgGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATaa    >  2:3688292/1‑93 (MQ=255)

                                                                                     gcgGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATaaa   <  2:4020321/93‑1 (MQ=255)

                                                                                     gcgGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATaaa   <  1:897256/93‑1 (MQ=255)

                                                                                     gcgGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATaaa   <  2:514498/93‑1 (MQ=255)

                                                                                     gcgGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATaaa   <  2:2548957/93‑1 (MQ=255)

                                                                                      cgGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATaaaa  <  1:4165012/93‑1 (MQ=255)

TGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGACAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAA  >  NC_000913/3683002‑3683180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCTGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGACAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAACG  >  NC_000913/3682999‑3683183

GGCTGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGC                                                                                             <  SRR4302535.968314/94‑1 (MQ=60)

     ACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGC                                                                                        <  SRR4302535.3928759/94‑1 (MQ=60)

     ACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGC                                                                                        <  SRR4302535.1963510/94‑1 (MQ=60)

      CCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCG                                                                                       >  SRR4302535.2220047/1‑94 (MQ=60)

        ACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAG                                                                                     <  SRR4302535.1434226/94‑1 (MQ=60)

        ACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGGTCGCGGGCAGAGCGAG                                                                                     >  SRR4302535.3227921/1‑94 (MQ=60)

         CGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGC                                                                                    <  SRR4302535.3758934/94‑1 (MQ=60)

           CCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAA                                                                                  <  SRR4302535.1325569/94‑1 (MQ=60)

             TGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATG                                                                                <  SRR4302535.4395080/94‑1 (MQ=60)

               CCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCT                                                                              >  SRR4302535.2772427/1‑94 (MQ=60)

               CCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCT                                                                              >  SRR4302535.1457614/1‑94 (MQ=60)

               CCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCT                                                                              <  SRR4302535.1501651/94‑1 (MQ=60)

                CGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTT                                                                             >  SRR4302535.3019929/1‑94 (MQ=60)

                CGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTT                                                                             <  SRR4302535.3951540/94‑1 (MQ=60)

                CGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTT                                                                             >  SRR4302535.209976/1‑94 (MQ=60)

                CGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTT                                                                             >  SRR4302535.1378056/1‑94 (MQ=60)

                  GTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTC                                                                           >  SRR4302535.279857/1‑94 (MQ=60)

                   TTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCC                                                                          >  SRR4302535.4247240/1‑94 (MQ=60)

                   TTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCC                                                                          >  SRR4302535.58242/1‑94 (MQ=60)

                   TTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCC                                                                          >  SRR4302535.1133112/1‑94 (MQ=60)

                      AATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGT                                                                       >  SRR4302535.4400003/1‑94 (MQ=60)

                        TGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTG                                                                     <  SRR4302535.453769/94‑1 (MQ=60)

                          CTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCG                                                                   >  SRR4302535.3275460/1‑94 (MQ=60)

                          CTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCG                                                                   >  SRR4302535.3461493/1‑94 (MQ=60)

                            GGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTA                                                                 <  SRR4302535.2751572/94‑1 (MQ=60)

                              CAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGC                                                               <  SRR4302535.3087228/94‑1 (MQ=60)

                              CAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGC                                                               <  SRR4302535.3367087/94‑1 (MQ=60)

                                 GAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGT                                                            <  SRR4302535.2892084/94‑1 (MQ=60)

                                  AATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTG                                                           >  SRR4302535.2043349/1‑94 (MQ=60)

                                  AATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTG                                                           >  SRR4302535.2830866/1‑94 (MQ=60)

                                    TAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTT                                                         <  SRR4302535.1987408/94‑1 (MQ=60)

                                     AGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTA                                                        <  SRR4302535.683936/94‑1 (MQ=60)

                                      GCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTAT                                                       <  SRR4302535.2885179/94‑1 (MQ=60)

                                       CTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATA                                                      <  SRR4302535.3132355/94‑1 (MQ=60)

                                        TTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAG                                                     <  SRR4302535.1013640/94‑1 (MQ=60)

                                        TTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAG                                                     >  SRR4302535.574035/1‑94 (MQ=60)

                                           CGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGA                                                  >  SRR4302535.284583/1‑94 (MQ=60)

                                           CGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGA                                                  >  SRR4302535.4327239/1‑94 (MQ=60)

                                           CGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGA                                                  >  SRR4302535.1643159/1‑94 (MQ=60)

                                            GCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGAT                                                 <  SRR4302535.3735312/94‑1 (MQ=60)

                                            GCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGAT                                                 >  SRR4302535.512177/1‑94 (MQ=60)

                                            GCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGAT                                                 <  SRR4302535.2810146/94‑1 (MQ=60)

                                            GCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGAT                                                 <  SRR4302535.2754104/94‑1 (MQ=60)

                                             CTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATT                                                <  SRR4302535.1953387/94‑1 (MQ=60)

                                             CTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATT                                                >  SRR4302535.3822432/1‑94 (MQ=60)

                                             CTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTACCCGTGTTATAGCGATT                                                >  SRR4302535.1843743/1‑94 (MQ=60)

                                              TTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTC                                               <  SRR4302535.2927377/94‑1 (MQ=60)

                                               tnngnnnnnnnncntttcannnnnnCTNAANATAANGGTTCCNGGGCAGAGCGAGCAANGCTTCCCAGTTGCGTAGCCGTGTTATAGCGATTCT                                              <  SRR4302535.1665600/69‑1 (MQ=56)

                                               TCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCT                                              <  SRR4302535.1195641/94‑1 (MQ=60)

                                               TCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCT                                              <  SRR4302535.2552535/94‑1 (MQ=60)

                                                CGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTG                                             <  SRR4302535.2343954/94‑1 (MQ=60)

                                                 GGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGC                                            >  SRR4302535.2140224/1‑94 (MQ=60)

                                                 GGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGC                                            >  SRR4302535.4518965/1‑94 (MQ=60)

                                                  GGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCT                                           <  SRR4302535.4489016/94‑1 (MQ=60)

                                                    AATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGG                                         >  SRR4302535.152354/1‑94 (MQ=60)

                                                     ATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGA                                        >  SRR4302535.3230842/1‑94 (MQ=60)

                                                     ATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGA                                        >  SRR4302535.4265502/1‑94 (MQ=60)

                                                     ATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGA                                        >  SRR4302535.1377749/1‑94 (MQ=60)

                                                      TATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAC                                       >  SRR4302535.1929626/1‑94 (MQ=60)

                                                      TATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAC                                       >  SRR4302535.1061484/1‑94 (MQ=60)

                                                       ATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACC                                      >  SRR4302535.2794448/1‑94 (MQ=60)

                                                         CGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAG                                    <  SRR4302535.3129527/94‑1 (MQ=60)

                                                          GCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGA                                   >  SRR4302535.2140433/1‑94 (MQ=60)

                                                           CCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGAT                                  >  SRR4302535.2455270/1‑94 (MQ=60)

                                                            CTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATG                                 >  SRR4302535.3958705/1‑94 (MQ=60)

                                                            CTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATG                                 >  SRR4302535.2373861/1‑94 (MQ=60)

                                                            CTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGACG                                 <  SRR4302535.4453930/94‑1 (MQ=60)

                                                             TTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGG                                <  SRR4302535.2393185/94‑1 (MQ=60)

                                                             TTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGG                                <  SRR4302535.3259393/94‑1 (MQ=60)

                                                              TTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGA                               <  SRR4302535.4656450/94‑1 (MQ=60)

                                                              TTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGA                               <  SRR4302535.2192140/94‑1 (MQ=60)

                                                              TTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGA                               >  SRR4302535.3652706/1‑94 (MQ=60)

                                                                CAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAC                             <  SRR4302535.103112/94‑1 (MQ=60)

                                                                CAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAC                             <  SRR4302535.3206754/94‑1 (MQ=60)

                                                                CAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAC                             >  SRR4302535.2113159/1‑94 (MQ=60)

                                                                 AAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACA                            <  SRR4302535.1470520/94‑1 (MQ=60)

                                                                 AAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACA                            <  SRR4302535.4251894/94‑1 (MQ=60)

                                                                 AAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACA                            >  SRR4302535.2124327/1‑94 (MQ=60)

                                                                  AAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAG                           >  SRR4302535.416430/1‑94 (MQ=60)

                                                                  AAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAG                           >  SRR4302535.3998017/1‑94 (MQ=60)

                                                                  AAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAG                           <  SRR4302535.3725061/94‑1 (MQ=60)

                                                                   AATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGC                          <  SRR4302535.4703889/94‑1 (MQ=60)

                                                                   AATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGC                          >  SRR4302535.2675512/1‑94 (MQ=60)

                                                                    ATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCA                         <  SRR4302535.385745/94‑1 (MQ=60)

                                                                    ATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCA                         >  SRR4302535.3125912/1‑94 (MQ=60)

                                                                     TAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAA                        <  SRR4302535.2605414/94‑1 (MQ=60)

                                                                      AGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAA                       <  SRR4302535.1498508/94‑1 (MQ=60)

                                                                      AGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAA                       >  SRR4302535.4089709/1‑94 (MQ=60)

                                                                       GCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAA                      >  SRR4302535.4349727/1‑94 (MQ=60)

                                                                       GCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAA                      <  SRR4302535.2310102/94‑1 (MQ=60)

                                                                        CTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAC                     <  SRR4302535.3025971/94‑1 (MQ=60)

                                                                        CTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAC                     <  SRR4302535.2245922/94‑1 (MQ=60)

                                                                        CTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAC                     <  SRR4302535.3289868/94‑1 (MQ=60)

                                                                         TGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACG                    >  SRR4302535.4423082/1‑94 (MQ=60)

                                                                         TGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACG                    <  SRR4302535.1240702/94‑1 (MQ=60)

                                                                         TGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACG                    >  SRR4302535.900132/1‑94 (MQ=60)

                                                                          GAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGG                   <  SRR4302535.4292872/94‑1 (MQ=60)

                                                                          GAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGG                   >  SRR4302535.3105964/1‑94 (MQ=60)

                                                                           AAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGT                  <  SRR4302535.533581/94‑1 (MQ=60)

                                                                           AAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGT                  >  SRR4302535.608155/1‑94 (MQ=60)

                                                                            AGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTG                 >  SRR4302535.1541969/1‑94 (MQ=60)

                                                                            AGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTG                 >  SRR4302535.934502/1‑94 (MQ=60)

                                                                            AGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTG                 <  SRR4302535.3271688/94‑1 (MQ=60)

                                                                            AGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTG                 <  SRR4302535.3557973/94‑1 (MQ=60)

                                                                            AGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTG                 >  SRR4302535.3694058/1‑94 (MQ=60)

                                                                             GATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGC                >  SRR4302535.1514275/1‑94 (MQ=60)

                                                                             GATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGC                >  SRR4302535.3809249/1‑94 (MQ=60)

                                                                              ATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCA               <  SRR4302535.1978273/94‑1 (MQ=60)

                                                                              ATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCA               <  SRR4302535.2667987/94‑1 (MQ=60)

                                                                              ATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCA               >  SRR4302535.2545920/1‑94 (MQ=60)

                                                                               TAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAA              >  SRR4302535.209637/1‑94 (MQ=60)

                                                                                AAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAA             >  SRR4302535.4658957/1‑94 (MQ=60)

                                                                                AAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAA             >  SRR4302535.1341110/1‑94 (MQ=60)

                                                                                AAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGGTCTAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCCAA             >  SRR4302535.360893/1‑94 (MQ=60)

                                                                                        GCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAA     <  SRR4302535.2345076/94‑1 (MQ=60)

                                                                                        GCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAA     <  SRR4302535.265604/94‑1 (MQ=60)

                                                                                        GCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAA     <  SRR4302535.903615/94‑1 (MQ=60)

                                                                                         CGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAA    <  SRR4302535.4193531/94‑1 (MQ=60)

                                                                                          GGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAAC   <  SRR4302535.104482/94‑1 (MQ=60)

                                                                                          GGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAAC   <  SRR4302535.791753/94‑1 (MQ=60)

                                                                                          GGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAAC   >  SRR4302535.1039889/1‑94 (MQ=60)

                                                                                           GGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAACG  <  SRR4302535.925957/94‑1 (MQ=60)

GGCTGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGACAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAACG  >  NC_000913/3682999‑3683183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`