Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,683,927	G→A	N942N (AAC→AAT)	b3530 ←	putative oxidoreductase subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,683,927	0	G	A	99.6%	799.4 / NA	221	N942N (AAC→AAT)	b3530	putative oxidoreductase subunit
Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (127/93); total (127/94)
Fisher's exact test for biased strand distribution p-value = 4.25e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 225 total aligned reads displayed.

ATAGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCGTTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC  >  NC_000913/3683837‑3684016

ataGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCAtt                                                                                         >  1:3182880/1‑93 (MQ=255)

 taGTACTAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTGCCGGTTATCTGGTCGCCACTAAGCGATGCCCAGGCGCCGttt                                                                                        <  2:2822698/93‑1 (MQ=255)

 taGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCAttt                                                                                        <  2:3635778/93‑1 (MQ=255)

   gTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGc                                                                                      <  2:4196604/93‑1 (MQ=255)

    tAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCt                                                                                     >  2:2333631/1‑93 (MQ=255)

    tAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCt                                                                                     <  2:1069118/93‑1 (MQ=255)

    tAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCt                                                                                     <  1:3447502/93‑1 (MQ=255)

     aaTAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCtt                                                                                    <  1:91028/93‑1 (MQ=255)

     aaTAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCtt                                                                                    >  1:3578343/1‑93 (MQ=255)

      aTAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTc                                                                                   >  2:1898729/1‑93 (MQ=255)

      aTAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTc                                                                                   >  1:177270/1‑93 (MQ=255)

      aTAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTc                                                                                   <  1:3058795/93‑1 (MQ=255)

       tAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCa                                                                                  <  2:3078795/93‑1 (MQ=255)

       tAGCCCGTCATCCAGCGCACGCGCCAGCTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGACGCCCAGACGCTATTTGATTCa                                                                                  >  1:4204508/1‑93 (MQ=255)

       tAGCCCGTCATCCAGCGCACGCCGCAGTTATCTTCGCCATTTTTACCGGTTACCTGGTCGCCACTAAGCGATTCCCAGACGCCATTTGCTTCa                                                                                  <  2:2137504/93‑1 (MQ=255)

       tAGCCCGTCATACAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCa                                                                                  >  1:554738/1‑93 (MQ=255)

        aGCCCGTCATCCAGGGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCAc                                                                                 >  2:1244930/1‑93 (MQ=255)

        aGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCAc                                                                                 >  2:3822216/1‑93 (MQ=255)

         gCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCAcc                                                                                >  1:2819681/1‑93 (MQ=255)

          cccGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCt                                                                               <  1:4521873/93‑1 (MQ=255)

            cGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCttt                                                                             <  1:581849/93‑1 (MQ=255)

             ggcATCCAGCGCACGCGCCAGTTATCGTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACTCCATTTGCTTCACCTTTa                                                                            <  1:1302921/91‑1 (MQ=255)

             gTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTa                                                                            <  1:1526282/93‑1 (MQ=255)

              tCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTAt                                                                           <  1:2032057/93‑1 (MQ=255)

              gcATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTAt                                                                           <  1:458550/92‑1 (MQ=255)

                 tCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGt                                                                        >  2:2876692/1‑93 (MQ=255)

                 tCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGt                                                                        >  1:1799876/1‑93 (MQ=255)

                 tCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGt                                                                        >  1:1626709/1‑93 (MQ=255)

                   cAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAg                                                                      >  2:2528830/1‑93 (MQ=255)

                     gcgcACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCt                                                                    >  2:2976202/1‑93 (MQ=255)

                       gcACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCa                                                                  <  1:729179/93‑1 (MQ=255)

                       gcACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCa                                                                  <  2:3865142/93‑1 (MQ=255)

                        cACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAg                                                                 >  2:2715534/1‑93 (MQ=255)

                         aCGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGa                                                                <  2:2036384/93‑1 (MQ=255)

                         aCGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGa                                                                <  1:1055560/93‑1 (MQ=255)

                           gcgcCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACt                                                              >  2:108930/1‑93 (MQ=255)

                           gcgcCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACt                                                              <  2:4136271/93‑1 (MQ=255)

                            cgcCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACtt                                                             >  1:2380593/1‑93 (MQ=255)

                            cgcCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACtt                                                             <  2:2219918/93‑1 (MQ=255)

                             gcCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTa                                                            <  2:1652678/93‑1 (MQ=255)

                             gcCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTa                                                            <  1:3099628/93‑1 (MQ=255)

                             gcCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTa                                                            <  2:1427782/93‑1 (MQ=255)

                             gcCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTa                                                            >  2:3171708/1‑93 (MQ=255)

                               cAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGc                                                          >  1:2900045/1‑93 (MQ=255)

                                 gTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGccc                                                        >  2:1573370/1‑93 (MQ=255)

                                   tATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCca                                                      >  1:361599/1‑93 (MQ=255)

                                   tATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCca                                                      >  1:1216824/1‑93 (MQ=255)

                                   tATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCca                                                      >  2:3725940/1‑93 (MQ=255)

                                     tCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCcaca                                                    >  2:3000026/1‑93 (MQ=255)

                                       ttCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACAcc                                                  >  2:1322390/1‑93 (MQ=255)

                                         cGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGt                                                <  2:1677930/93‑1 (MQ=255)

                                         cGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGt                                                <  2:324227/93‑1 (MQ=255)

                                          gACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTc                                               >  2:2507436/1‑93 (MQ=255)

                                           aCATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCg                                              >  1:2293969/1‑93 (MQ=255)

                                            cATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCgg                                             >  1:856213/1‑93 (MQ=255)

                                            cATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCgg                                             >  2:354090/1‑93 (MQ=255)

                                             aTTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGc                                            >  1:4652236/1‑93 (MQ=255)

                                              tttttACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCa                                           <  2:4088949/93‑1 (MQ=255)

                                              tttttACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCa                                           <  1:4195406/93‑1 (MQ=255)

                                              tttttACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCa                                           <  2:1472115/93‑1 (MQ=255)

                                              tttttACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCa                                           <  1:274401/93‑1 (MQ=255)

                                              tttttACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCa                                           <  1:3744861/93‑1 (MQ=255)

                                               ttttACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCAc                                          >  2:1779208/1‑93 (MQ=255)

                                                 ttACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGt                                        >  1:4253545/1‑93 (MQ=255)

                                                  tACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTa                                       <  2:4673798/93‑1 (MQ=255)

                                                  tACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTa                                       <  1:3760257/93‑1 (MQ=255)

                                                  tACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTa                                       <  2:3784194/93‑1 (MQ=255)

                                                  tACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTa                                       <  2:1410172/93‑1 (MQ=255)

                                                   aCCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTAc                                      <  1:1873096/93‑1 (MQ=255)

                                                   aCCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTAc                                      >  2:2449650/1‑93 (MQ=255)

                                                     cGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGc                                    >  2:3213267/1‑93 (MQ=255)

                                                      ggTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGcc                                   <  1:2468794/93‑1 (MQ=255)

                                                       gTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCCCGTACGCCa                                  >  2:1809644/1‑93 (MQ=255)

                                                       gTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCa                                  >  2:3994196/1‑93 (MQ=255)

                                                         tAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCAcc                                >  2:2962907/1‑93 (MQ=255)

                                                           aCTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCAcccc                              >  2:796270/1‑93 (MQ=255)

                                                           aCTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCAcccc                              >  1:2099342/1‑93 (MQ=255)

                                                             tGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCAt                            >  1:1823002/1‑93 (MQ=255)

                                                              ggTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCAtt                           >  1:78604/1‑93 (MQ=255)

                                                                   ccACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTc                      >  1:122800/1‑93 (MQ=255)

                                                                    cACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTcc                     >  1:4627213/1‑93 (MQ=255)

                                                                    cACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTcc                     >  2:3329614/1‑93 (MQ=255)

                                                                     aCTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTccc                    <  1:3773852/93‑1 (MQ=255)

                                                                     aCTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTccc                    >  2:1971346/1‑93 (MQ=255)

                                                                     aCTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTccc                    >  2:1670426/1‑93 (MQ=255)

                                                                      cTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCg                   <  1:3636795/93‑1 (MQ=255)

                                                                        aaGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGt                 <  1:2318892/93‑1 (MQ=255)

                                                                         aGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTa                <  1:3527193/93‑1 (MQ=255)

                                                                         aGCGATGCCCAGACGCCATTTGCTTCACCTTTAACGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTa                >  1:3881055/1‑93 (MQ=255)

                                                                          gCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTAt               >  2:667974/1‑93 (MQ=255)

                                                                          gCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTAt               >  1:1551120/1‑93 (MQ=255)

                                                                          gCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTAt               >  1:2406960/1‑93 (MQ=255)

                                                                             aTGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGc            >  1:2912797/1‑93 (MQ=255)

                                                                             aTGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGc            >  1:2638879/1‑93 (MQ=255)

                                                                               gCCCAGACGCCATTTGCTTCACCTTTATCGGAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTc          <  1:1030091/93‑1 (MQ=255)

                                                                                  cAGAAGCCATTTGTTTCACCTTTATCGTAGCTCAGACTTAGGCCCACACTGTCGGCACGTCCGCTGACCCAGTTTTTGCAGGGATAGCACggg       >  2:3473074/1‑93 (MQ=255)

                                                                                    gACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGa     <  1:3199465/93‑1 (MQ=255)

                                                                                    gACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGa     <  1:873661/93‑1 (MQ=255)

                                                                                       gCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTc  <  2:4405924/93‑1 (MQ=255)

                                                                                       gCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTc  >  1:437439/1‑93 (MQ=255)

ATAGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCGTTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC  >  NC_000913/3683837‑3684016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTTATAGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCGTTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTCTTTT  >  NC_000913/3683834‑3684020

CTTATAGTAATAGCCCGTCATCCAGCCCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCA                                                                                               <  SRR4302535.1055514/94‑1 (MQ=60)

 TTATAGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCAT                                                                                              <  SRR4302535.957502/94‑1 (MQ=60)

 TTATAGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCAT                                                                                              <  SRR4302535.2138928/94‑1 (MQ=60)

 TTATAGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCAT                                                                                              <  SRR4302535.4687220/94‑1 (MQ=60)

  TATAGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATT                                                                                             >  SRR4302535.2702082/1‑94 (MQ=60)

  TATAGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATT                                                                                             >  SRR4302535.3204872/1‑94 (MQ=60)

      GTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCT                                                                                         >  SRR4302535.756718/1‑94 (MQ=60)

      GTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCT                                                                                         >  SRR4302535.3000739/1‑94 (MQ=60)

       TAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTT                                                                                        <  SRR4302535.3471473/94‑1 (MQ=60)

       TAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTT                                                                                        >  SRR4302535.3603150/1‑94 (MQ=60)

        AATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTC                                                                                       >  SRR4302535.178502/1‑94 (MQ=60)

        AATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTC                                                                                       <  SRR4302535.3770014/94‑1 (MQ=60)

        AATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTC                                                                                       <  SRR4302535.1231422/94‑1 (MQ=60)

        AATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTC                                                                                       <  SRR4302535.91673/94‑1 (MQ=60)

         ATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCA                                                                                      <  SRR4302535.2921687/94‑1 (MQ=60)

         ATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCA                                                                                      >  SRR4302535.1820756/1‑94 (MQ=60)

         ATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCA                                                                                      <  SRR4302535.3080189/94‑1 (MQ=60)

         ATAGCCCGTCATCCAGCGCACGCGCCAGCTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGACGCCCAGACGCTATTTGATTCA                                                                                      >  SRR4302535.4233285/1‑94 (MQ=60)

         ATAGCCCGTCATACAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCA                                                                                      >  SRR4302535.558626/1‑94 (MQ=60)

           AGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACC                                                                                    >  SRR4302535.2839706/1‑94 (MQ=60)

             CCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTT                                                                                  <  SRR4302535.4552861/94‑1 (MQ=60)

             CCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTT                                                                                  >  SRR4302535.422636/1‑94 (MQ=60)

               CGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTA                                                                                <  SRR4302535.585933/94‑1 (MQ=60)

               CGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTA                                                                                >  SRR4302535.1559541/1‑94 (MQ=60)

               CGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTA                                                                                >  SRR4302535.1658636/1‑94 (MQ=60)

                GTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTAT                                                                               <  SRR4302535.1537278/94‑1 (MQ=60)

                GTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTAT                                                                               >  SRR4302535.2457121/1‑94 (MQ=60)

                GTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTAT                                                                               >  SRR4302535.3085008/1‑94 (MQ=60)

                GGCATCCAGCGCACGCGCCAGTTATCGTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACTCCATTTGCTTCACCTTTAT                                                                               <  SRR4302535.1312223/94‑1 (MQ=60)

                 TCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATC                                                                              <  SRR4302535.2046702/94‑1 (MQ=60)

                 TCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATC                                                                              >  SRR4302535.1306581/1‑94 (MQ=60)

                 GCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATC                                                                              <  SRR4302535.461759/94‑1 (MQ=60)

                  CATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCG                                                                             >  SRR4302535.2301572/1‑94 (MQ=60)

                   ATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGT                                                                            >  SRR4302535.1812889/1‑94 (MQ=60)

                   ATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGT                                                                            >  SRR4302535.4392634/1‑94 (MQ=60)

                   ATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGT                                                                            >  SRR4302535.1790736/1‑94 (MQ=60)

                   ATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGT                                                                            >  SRR4302535.1638453/1‑94 (MQ=60)

                   ATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGT                                                                            >  SRR4302535.1565161/1‑94 (MQ=60)

                   ATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGT                                                                            >  SRR4302535.23589/1‑94 (MQ=60)

                    TCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTA                                                                           <  SRR4302535.2623190/94‑1 (MQ=60)

                     CCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAG                                                                          <  SRR4302535.2342240/94‑1 (MQ=60)

                     CCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAG                                                                          <  SRR4302535.862604/94‑1 (MQ=60)

                       AGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCT                                                                        <  SRR4302535.3794040/94‑1 (MQ=60)

                       AGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCT                                                                        >  SRR4302535.1303419/1‑94 (MQ=60)

                          GCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAG                                                                     <  SRR4302535.734294/94‑1 (MQ=60)

                            ACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGAC                                                                   <  SRR4302535.1063064/94‑1 (MQ=60)

                              GCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTT                                                                 >  SRR4302535.2397690/1‑94 (MQ=60)

                               CGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTA                                                                >  SRR4302535.3813960/1‑94 (MQ=60)

                               CGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTA                                                                >  SRR4302535.3214600/1‑94 (MQ=60)

                                GCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAG                                                               >  SRR4302535.1115682/1‑94 (MQ=60)

                                GCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAG                                                               <  SRR4302535.3121209/94‑1 (MQ=60)

                                 CCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGC                                                              >  SRR4302535.2920547/1‑94 (MQ=60)

                                 CCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGC                                                              >  SRR4302535.4512102/1‑94 (MQ=60)

                                 CCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGC                                                              <  SRR4302535.3846964/94‑1 (MQ=60)

                                  CAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCC                                                             >  SRR4302535.1747831/1‑94 (MQ=60)

                                   AGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCC                                                            >  SRR4302535.3775666/1‑94 (MQ=60)

                                    GTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCTCC                                                           >  SRR4302535.4711517/1‑94 (MQ=60)

                                     TTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCA                                                          >  SRR4302535.1940591/1‑94 (MQ=60)

                                     TTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCA                                                          >  SRR4302535.1225549/1‑94 (MQ=60)

                                     TTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCA                                                          >  SRR4302535.364095/1‑94 (MQ=60)

                                      TATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCAC                                                         >  SRR4302535.291805/1‑94 (MQ=60)

                                        TCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACAC                                                       >  SRR4302535.3648773/1‑94 (MQ=60)

                                         CTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACC                                                      >  SRR4302535.2738364/1‑94 (MQ=60)

                                          TTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCG                                                     <  SRR4302535.3487296/94‑1 (MQ=60)

                                            CGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTC                                                   >  SRR4302535.792758/1‑94 (MQ=60)

                                             GACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCG                                                  >  SRR4302535.2310376/1‑94 (MQ=60)

                                              ACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGG                                                 >  SRR4302535.862247/1‑94 (MQ=60)

                                               CATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGC                                                >  SRR4302535.4683736/1‑94 (MQ=60)

                                                 TTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCAC                                              <  SRR4302535.4224115/94‑1 (MQ=60)

                                                 TTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCAC                                              <  SRR4302535.3770771/94‑1 (MQ=60)

                                                 TTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCAC                                              <  SRR4302535.567175/94‑1 (MQ=60)

                                                 TTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCAC                                              <  SRR4302535.276309/94‑1 (MQ=60)

                                                 TTGTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTGAGACTTAGCCCCACACCGTCGGCAC                                              >  SRR4302535.4561604/1‑94 (MQ=60)

                                                   TTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGT                                            >  SRR4302535.360026/1‑94 (MQ=60)

                                                   TTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGT                                            >  SRR4302535.4282692/1‑94 (MQ=60)

                                                     TACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTAC                                          <  SRR4302535.744155/94‑1 (MQ=60)

                                                     TACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTAC                                          <  SRR4302535.1994266/94‑1 (MQ=60)

                                                     TACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTAC                                          <  SRR4302535.3786246/94‑1 (MQ=60)

                                                      ACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACG                                         <  SRR4302535.1886594/94‑1 (MQ=60)

                                                        CGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCC                                       >  SRR4302535.4653937/1‑94 (MQ=60)

                                                         GGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCA                                      <  SRR4302535.2486590/94‑1 (MQ=60)

                                                           TTAACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACC                                    <  SRR4302535.4668313/94‑1 (MQ=60)

                                                             AACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCC                                  >  SRR4302535.2114485/1‑94 (MQ=60)

                                                              ACTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCA                                 >  SRR4302535.3125855/1‑94 (MQ=60)

                                                               CTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCAT                                <  SRR4302535.659071/94‑1 (MQ=60)

                                                               CTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCAT                                >  SRR4302535.4376758/1‑94 (MQ=60)

                                                               CTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCAT                                >  SRR4302535.1836169/1‑94 (MQ=60)

                                                               CTGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCAT                                >  SRR4302535.3347557/1‑94 (MQ=60)

                                                                TGGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATT                               >  SRR4302535.79169/1‑94 (MQ=60)

                                                                 GGTCGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTT                              <  SRR4302535.902927/94‑1 (MQ=60)

                                                                    CGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTT                           >  SRR4302535.1043334/1‑94 (MQ=60)

                                                                    CGCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTT                           >  SRR4302535.3067600/1‑94 (MQ=60)

                                                                     GCCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTC                          >  SRR4302535.123664/1‑94 (MQ=60)

                                                                      CCACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCC                         >  SRR4302535.4658625/1‑94 (MQ=60)

                                                                       CACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCC                        >  SRR4302535.1850210/1‑94 (MQ=60)

                                                                       CACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCC                        <  SRR4302535.2406841/94‑1 (MQ=60)

                                                                        ACTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCG                       <  SRR4302535.3799880/94‑1 (MQ=60)

                                                                         CTAAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGG                      <  SRR4302535.3661997/94‑1 (MQ=60)

                                                                           AAGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTA                    <  SRR4302535.2335492/94‑1 (MQ=60)

                                                                           AAGCGATGCCCAGACGCCATTTGCTTCACCTTTAACGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTA                    >  SRR4302535.3907691/1‑94 (MQ=60)

                                                                            AGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTAT                   >  SRR4302535.1562290/1‑94 (MQ=60)

                                                                            AGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTAT                   <  SRR4302535.3551687/94‑1 (MQ=60)

                                                                            AGCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTAT                   >  SRR4302535.2424288/1‑94 (MQ=60)

                                                                             GCGATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATT                  <  SRR4302535.2048193/94‑1 (MQ=60)

                                                                               GATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGC                >  SRR4302535.2933375/1‑94 (MQ=60)

                                                                               GATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGC                >  SRR4302535.3357718/1‑94 (MQ=60)

                                                                               GATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGC                >  SRR4302535.2657781/1‑94 (MQ=60)

                                                                                ATGCCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCT               >  SRR4302535.2765455/1‑94 (MQ=60)

                                                                                  GCCCAGACGCCATTTGCTTCACCTTTATCGGAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCG             <  SRR4302535.1037400/94‑1 (MQ=60)

                                                                                   CCCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGG            >  SRR4302535.3651218/1‑94 (MQ=60)

                                                                                    CCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGG           <  SRR4302535.4674613/94‑1 (MQ=60)

                                                                                    CCAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGG           <  SRR4302535.1312821/94‑1 (MQ=60)

                                                                                     CAGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGG          >  SRR4302535.987836/1‑94 (MQ=60)

                                                                                      AGACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGG         >  SRR4302535.3627111/1‑94 (MQ=60)

                                                                                       GACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAG        <  SRR4302535.3221614/94‑1 (MQ=60)

                                                                                       GACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAG        <  SRR4302535.879852/94‑1 (MQ=60)

                                                                                       GACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAG        <  SRR4302535.4282049/94‑1 (MQ=60)

                                                                                       GACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAG        <  SRR4302535.4066063/94‑1 (MQ=60)

                                                                                        ACGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGT       >  SRR4302535.231627/1‑94 (MQ=60)

                                                                                         CGCCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC      >  SRR4302535.440497/1‑94 (MQ=60)

                                                                                           CCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTCTT    <  SRR4302535.2721234/94‑1 (MQ=60)

                                                                                           CCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTCTT    <  SRR4302535.2827927/94‑1 (MQ=60)

                                                                                           CCATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTCTT    >  SRR4302535.4187174/1‑94 (MQ=60)

                                                                                            CATTTGGTTCACCTTTATCGTAGCTCAGACTTAGCCACACACCGTCGGCACGTACGCCGCCCCATTTGTTCCCGGTATTGCTCGGGGAGTCTTT   <  SRR4302535.4246914/94‑1 (MQ=60)

                                                                                            CATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTCTTT   >  SRR4302535.1625670/1‑94 (MQ=60)

                                                                                             ATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTTCCGGCATTGCTCGGGGAGTCTTTT  >  SRR4302535.4385029/1‑94 (MQ=60)

                                                                                             ATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTCTTTT  <  SRR4302535.3333060/94‑1 (MQ=60)

                                                                                             ATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTCTTTT  >  SRR4302535.1805705/1‑94 (MQ=60)

                                                                                             ATTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTCTTTT  >  SRR4302535.3782587/1‑94 (MQ=60)

CTTATAGTAATAGCCCGTCATCCAGCGCACGCGCCAGTTATCTTCGACATTTTTACCGGTTAACTGGTCGCCACTAAGCGATGCCCAGACGCCGTTTGCTTCACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTCTTTT  >  NC_000913/3683834‑3684020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`