Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,707,913	A→G	R75R (CGT→CGC)	yhjW ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,707,913	0	A	G	100.0%	731.4 / NA	231	R75R (CGT→CGC)	yhjW	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (99/132); total (99/132)

Only 100 of 246 total aligned reads displayed.

GAAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGACGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGCT  >  NC_000913/3707823‑3708002

  aggTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCgta                                                                                       <  2:3243667/93‑1 (MQ=255)

  aggTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCgta                                                                                       >  1:1131472/1‑93 (MQ=255)

  aggTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCgta                                                                                       <  1:3505436/93‑1 (MQ=255)

  aggTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCgta                                                                                       <  1:1427402/93‑1 (MQ=255)

  aggTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCgta                                                                                       >  1:538373/1‑93 (MQ=255)

      cATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTaa                                                                                   >  1:149135/1‑93 (MQ=255)

      cATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTaa                                                                                   <  1:3469416/93‑1 (MQ=255)

      cATGCAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTaa                                                                                   >  2:3183967/1‑93 (MQ=255)

       aTGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTaaa                                                                                  <  2:3154573/93‑1 (MQ=255)

        tGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTaaaa                                                                                 <  1:1976273/93‑1 (MQ=255)

        tGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTaaaa                                                                                 >  2:4214280/1‑93 (MQ=255)

        tGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTaaaa                                                                                 <  1:318216/93‑1 (MQ=255)

         gTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTaaaaa                                                                                <  2:3026332/93‑1 (MQ=255)

         gTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTaaaaa                                                                                <  1:3620001/93‑1 (MQ=255)

         gTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTaaaaa                                                                                >  2:494465/1‑93 (MQ=255)

          tAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAaag                                                                               <  2:2695798/93‑1 (MQ=255)

          tAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAaag                                                                               >  1:2983227/1‑93 (MQ=255)

          tAATAGCTGGCACCTGCGGAAAAGAGCAACACCAGCCATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGCATAaag                                                                               >  1:32430/1‑93 (MQ=255)

           aaTAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAaaga                                                                              <  1:2119839/93‑1 (MQ=255)

           aaTAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAaaga                                                                              <  1:4512492/93‑1 (MQ=255)

            aTAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAaagaa                                                                             <  2:822553/93‑1 (MQ=255)

            aTAGCTGGCACCTGCGGAAAAGAGCACAACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAaagaa                                                                             >  1:4140310/1‑93 (MQ=255)

             tAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAaagaag                                                                            <  2:3290057/93‑1 (MQ=255)

             tAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAaagaag                                                                            >  2:3670796/1‑93 (MQ=255)

             tAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAaagaag                                                                            <  1:1565786/93‑1 (MQ=255)

             tAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAaagaag                                                                            >  1:1517114/1‑93 (MQ=255)

              aGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAgg                                                                           >  2:2153738/1‑93 (MQ=255)

              aGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAgg                                                                           <  1:1087354/93‑1 (MQ=255)

               gCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGt                                                                          <  2:1811231/93‑1 (MQ=255)

               gCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGt                                                                          <  2:2746713/93‑1 (MQ=255)

               gCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGt                                                                          <  1:4611992/93‑1 (MQ=255)

               acTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGt                                                                          <  2:2892511/92‑1 (MQ=255)

                 tGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCa                                                                        >  1:2055424/1‑93 (MQ=255)

                 tGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCa                                                                        >  1:1604905/1‑93 (MQ=255)

                 tGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCa                                                                        >  1:4430684/1‑93 (MQ=255)

                  ggCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCCGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCAc                                                                       <  1:2514910/93‑1 (MQ=255)

                    cACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCa                                                                     <  2:3001050/93‑1 (MQ=255)

                    cACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCa                                                                     <  2:2352392/93‑1 (MQ=255)

                      ccTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGt                                                                   >  1:1799787/1‑93 (MQ=255)

                       cTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTa                                                                  <  2:3356094/93‑1 (MQ=255)

                         gCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACg                                                                >  1:2149030/1‑93 (MQ=255)

                         gCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACg                                                                >  2:2552516/1‑93 (MQ=255)

                           ggAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGt                                                              <  2:3072169/93‑1 (MQ=255)

                           ggAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGt                                                              <  2:3095884/93‑1 (MQ=255)

                            gAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTg                                                             >  2:37655/1‑93 (MQ=255)

                            gAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTg                                                             <  2:3224510/93‑1 (MQ=255)

                            gAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTg                                                             >  1:91395/1‑93 (MQ=255)

                                agagCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTggcgg                                                         >  2:3161552/1‑93 (MQ=255)

                                  agCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGcc                                                       <  1:4638679/93‑1 (MQ=255)

                                    caccacCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAg                                                     >  2:4666525/1‑93 (MQ=255)

                                      ccaccaGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGtt                                                   <  2:4045226/93‑1 (MQ=255)

                                      ccaccaGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGtt                                                   >  2:2259848/1‑93 (MQ=255)

                                         ccaGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTcaa                                                <  2:1276986/93‑1 (MQ=255)

                                         ccaGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTcaa                                                <  1:3865229/93‑1 (MQ=255)

                                            gCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTcaacaa                                             >  1:1882612/1‑93 (MQ=255)

                                            gCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTcaacaa                                             >  2:2655190/1‑93 (MQ=255)

                                            gCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTcaacaa                                             <  1:4147651/93‑1 (MQ=255)

                                            gCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTcaacaa                                             <  2:2520368/93‑1 (MQ=255)

                                               aTGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAAcag                                          <  2:779829/93‑1 (MQ=255)

                                               aTGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAAcag                                          <  2:3976836/93‑1 (MQ=255)

                                                tGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAAcagc                                         <  1:2623139/93‑1 (MQ=255)

                                                tGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAAcagc                                         <  1:2436056/93‑1 (MQ=255)

                                                tGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAAcagc                                         <  1:4051756/93‑1 (MQ=255)

                                                 gCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAAcagca                                        <  2:2727999/93‑1 (MQ=255)

                                                   cAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGa                                      <  1:3589460/93‑1 (MQ=255)

                                                     gAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGaaa                                    >  2:3305353/1‑93 (MQ=255)

                                                       aTACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATg                                  >  2:1431828/1‑93 (MQ=255)

                                                        tACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGc                                 <  1:4225293/93‑1 (MQ=255)

                                                        tACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGc                                 <  2:4505517/93‑1 (MQ=255)

                                                        tACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGc                                 >  2:1706104/1‑93 (MQ=255)

                                                         aCGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGcc                                <  1:1819353/93‑1 (MQ=255)

                                                          cGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCt                               <  1:2410325/93‑1 (MQ=255)

                                                             cAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTc                            >  2:3585103/1‑93 (MQ=255)

                                                              aGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTcc                           >  1:674839/1‑93 (MQ=255)

                                                              aGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTcc                           >  1:2878534/1‑93 (MQ=255)

                                                               gCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCa                          <  2:3483206/93‑1 (MQ=255)

                                                                 tGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGa                        <  2:219063/93‑1 (MQ=255)

                                                                 tGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGa                        <  1:92841/93‑1 (MQ=255)

                                                                     gcggcCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGt                    >  1:2757350/1‑93 (MQ=255)

                                                                      cggcCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTa                   <  1:773210/93‑1 (MQ=255)

                                                                        gcCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGTTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTaaa                 <  1:1928520/93‑1 (MQ=255)

                                                                         ccAAACAGCGAAAGAAGGCGTATTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTaaaa                <  2:3800691/93‑1 (MQ=255)

                                                                          cAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAAt               <  1:553414/93‑1 (MQ=255)

                                                                           aaaCAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATc              <  1:3917121/93‑1 (MQ=255)

                                                                           aaaCAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATc              <  2:4188300/93‑1 (MQ=255)

                                                                            aaCAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCg             >  1:1095861/1‑93 (MQ=255)

                                                                             aCAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGt            <  2:4405195/93‑1 (MQ=255)

                                                                               aGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTgc          <  2:288287/93‑1 (MQ=255)

                                                                                gCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTgcg         <  2:2452753/93‑1 (MQ=255)

                                                                                gCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTgcg         >  2:1138886/1‑93 (MQ=255)

                                                                                gCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTgcg         >  1:1324776/1‑93 (MQ=255)

                                                                                  gAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCa       >  2:1644592/1‑93 (MQ=255)

                                                                                  gAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCa       <  2:1351751/93‑1 (MQ=255)

                                                                                   aaaGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCAt      >  1:3411570/1‑93 (MQ=255)

                                                                                    aagaagGCTTAGTAAAAAGTAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGGAAAATCGTGCGCATa     >  2:4570719/1‑93 (MQ=255)

                                                                                    aagaagGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAGCAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATa     <  1:432460/93‑1 (MQ=255)

                                                                                    aagaagGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATa     >  1:3018164/1‑93 (MQ=255)

                                                                                     agaaggCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAg    >  1:2329636/1‑93 (MQ=255)

                                                                                      gaagaCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGc   <  2:3753832/93‑1 (MQ=255)

                                                                                       aaggCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGCt  >  2:640843/1‑93 (MQ=255)

GAAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGACGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGCT  >  NC_000913/3707823‑3708002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAGGAAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGACGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGCTGCCG  >  NC_000913/3707820‑3708006

AAGGAAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGG                                                                                               >  SRR4302535.4403074/1‑94 (MQ=60)

AAGGAAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGG                                                                                               >  SRR4302535.3148153/1‑94 (MQ=60)

AAGGAAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGG                                                                                               <  SRR4302535.1116985/94‑1 (MQ=60)

 AGGAAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGC                                                                                              <  SRR4302535.3806182/94‑1 (MQ=60)

 AGGAAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGC                                                                                              >  SRR4302535.1872560/1‑94 (MQ=60)

    AAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTA                                                                                           >  SRR4302535.1139547/1‑94 (MQ=60)

    AAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTA                                                                                           >  SRR4302535.542131/1‑94 (MQ=60)

     AGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAG                                                                                          <  SRR4302535.1437591/94‑1 (MQ=60)

     AGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAG                                                                                          >  SRR4302535.4536448/1‑94 (MQ=60)

     AGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAG                                                                                          <  SRR4302535.3529796/94‑1 (MQ=60)

     AGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAG                                                                                          >  SRR4302535.2969102/1‑94 (MQ=60)

      GGTCATGTAATAGCGGGCACCTGCGGAAGAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGT                                                                                         <  SRR4302535.2426434/94‑1 (MQ=60)

       GTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATAAGCAAGCTGCGGAGGCCAAACAGCGAAAGAAGCAGTAGTA                                                                                        >  SRR4302535.787932/1‑94 (MQ=60)

        TCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAA                                                                                       >  SRR4302535.150173/1‑94 (MQ=60)

        TCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAA                                                                                       >  SRR4302535.2431404/1‑94 (MQ=60)

         CATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAA                                                                                      <  SRR4302535.3493526/94‑1 (MQ=60)

         CATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAA                                                                                      >  SRR4302535.1567439/1‑94 (MQ=60)

         CATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAA                                                                                      >  SRR4302535.2162304/1‑94 (MQ=60)

          ATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAA                                                                                     >  SRR4302535.295791/1‑94 (MQ=60)

           TGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAA                                                                                    <  SRR4302535.320422/94‑1 (MQ=60)

           TGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAA                                                                                    <  SRR4302535.1990504/94‑1 (MQ=60)

            GTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAG                                                                                   >  SRR4302535.3004150/1‑94 (MQ=60)

            GTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAG                                                                                   <  SRR4302535.3645094/94‑1 (MQ=60)

            GTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAG                                                                                   <  SRR4302535.4636649/94‑1 (MQ=60)

            GTAATAGCTGGCACCTGCGGAAAAGAGCAACACCAGCCATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGCATAAAG                                                                                   >  SRR4302535.32680/1‑94 (MQ=60)

              AATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAA                                                                                 >  SRR4302535.3047665/1‑94 (MQ=60)

              AATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAA                                                                                 <  SRR4302535.2135128/94‑1 (MQ=60)

              AATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAA                                                                                 <  SRR4302535.4543439/94‑1 (MQ=60)

              AATAGCTGGCACCTGCGGAAAAGAGCACAACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAA                                                                                 >  SRR4302535.4168658/1‑94 (MQ=60)

               ATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAG                                                                                >  SRR4302535.1817194/1‑94 (MQ=60)

               ATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAG                                                                                <  SRR4302535.2188665/94‑1 (MQ=60)

               ATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAG                                                                                >  SRR4302535.1528045/1‑94 (MQ=60)

               ATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAG                                                                                <  SRR4302535.1112602/94‑1 (MQ=60)

               ATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAG                                                                                >  SRR4302535.925125/1‑94 (MQ=60)

                TAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGG                                                                               <  SRR4302535.1577090/94‑1 (MQ=60)

                 AGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGT                                                                              <  SRR4302535.1095085/94‑1 (MQ=60)

                 AGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGT                                                                              <  SRR4302535.3825286/94‑1 (MQ=60)

                 AGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGT                                                                              <  SRR4302535.1543302/94‑1 (MQ=60)

                  GCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTC                                                                             <  SRR4302535.4643327/94‑1 (MQ=60)

                   GTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCA                                                                            <  SRR4302535.2026613/94‑1 (MQ=60)

                   CTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCA                                                                            >  SRR4302535.2070232/1‑94 (MQ=60)

                   CTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCA                                                                            >  SRR4302535.3919927/1‑94 (MQ=60)

                   CTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCA                                                                            >  SRR4302535.4461042/1‑94 (MQ=60)

                   CTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCA                                                                            >  SRR4302535.1616480/1‑94 (MQ=60)

                   CTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCA                                                                            >  SRR4302535.2720980/1‑94 (MQ=60)

                     GGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACC                                                                          >  SRR4302535.1282586/1‑94 (MQ=60)

                     GGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCCGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACC                                                                          <  SRR4302535.2533040/94‑1 (MQ=60)

                       CACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAG                                                                        >  SRR4302535.2422434/1‑94 (MQ=60)

                        ACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGT                                                                       >  SRR4302535.1812800/1‑94 (MQ=60)

                        ACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGT                                                                       >  SRR4302535.611341/1‑94 (MQ=60)

                          CTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTAC                                                                     <  SRR4302535.940038/94‑1 (MQ=60)

                           TGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACG                                                                    >  SRR4302535.2164485/1‑94 (MQ=60)

                              GGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTG                                                                 >  SRR4302535.1583697/1‑94 (MQ=60)

                              GGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTG                                                                 >  SRR4302535.92042/1‑94 (MQ=60)

                              GGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTG                                                                 >  SRR4302535.2132670/1‑94 (MQ=60)

                                 AAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGTCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCG                                                              >  SRR4302535.2527881/1‑94 (MQ=60)

                                 AAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCG                                                              >  SRR4302535.3568349/1‑94 (MQ=60)

                                 AAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCG                                                              <  SRR4302535.2365535/94‑1 (MQ=60)

                                   AGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGC                                                            <  SRR4302535.545643/94‑1 (MQ=60)

                                     AGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCGCCAGTACGGTGGCGGCCA                                                          <  SRR4302535.4175268/94‑1 (MQ=60)

                                     AGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCA                                                          >  SRR4302535.1468965/1‑94 (MQ=60)

                                     AGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCA                                                          <  SRR4302535.4670139/94‑1 (MQ=60)

                                     AGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCA                                                          <  SRR4302535.1350440/94‑1 (MQ=60)

                                      GCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAG                                                         <  SRR4302535.4351973/94‑1 (MQ=60)

                                      GCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAG                                                         >  SRR4302535.2524728/1‑94 (MQ=60)

                                        ACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTT                                                       <  SRR4302535.3714017/94‑1 (MQ=60)

                                         CCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTC                                                      <  SRR4302535.4404612/94‑1 (MQ=60)

                                          CACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGAGGCGGCCAGTTCA                                                     >  SRR4302535.4366395/1‑94 (MQ=60)

                                            CCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAAC                                                   <  SRR4302535.3891815/94‑1 (MQ=60)

                                             CAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACA                                                  <  SRR4302535.1784713/94‑1 (MQ=60)

                                              AGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAA                                                 >  SRR4302535.1896180/1‑94 (MQ=60)

                                               GCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAAC                                                <  SRR4302535.4176051/94‑1 (MQ=60)

                                                CGATGCCAGAATACGCCAGCTGCGGCTGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACA                                               <  SRR4302535.541993/94‑1 (MQ=60)

                                                  ATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGC                                             >  SRR4302535.3263231/1‑94 (MQ=60)

                                                  ATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGC                                             <  SRR4302535.3449403/94‑1 (MQ=60)

                                                   TGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCA                                            <  SRR4302535.2453609/94‑1 (MQ=60)

                                                   TGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCA                                            <  SRR4302535.4079494/94‑1 (MQ=60)

                                                   TGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCA                                            <  SRR4302535.2641938/94‑1 (MQ=60)

                                                      CAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAA                                         <  SRR4302535.350063/94‑1 (MQ=60)

                                                      CAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAA                                         <  SRR4302535.2887509/94‑1 (MQ=60)

                                                      CAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAA                                         <  SRR4302535.3614361/94‑1 (MQ=60)

                                                       AGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAA                                        >  SRR4302535.3622761/1‑94 (MQ=60)

                                                        GAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAAT                                       <  SRR4302535.3981980/94‑1 (MQ=60)

                                                        GAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAAT                                       <  SRR4302535.2579034/94‑1 (MQ=60)

                                                           TACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCC                                    <  SRR4302535.4254203/94‑1 (MQ=60)

                                                            ACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCT                                   <  SRR4302535.464911/94‑1 (MQ=60)

                                                            ACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCT                                   <  SRR4302535.1489183/94‑1 (MQ=60)

                                                            ACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCT                                   <  SRR4302535.1832498/94‑1 (MQ=60)

                                                             CGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTT                                  <  SRR4302535.2427676/94‑1 (MQ=60)

                                                              GCCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTT                                 <  SRR4302535.3557794/94‑1 (MQ=60)

                                                               CCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTC                                >  SRR4302535.1907887/1‑94 (MQ=60)

                                                               CCAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTC                                <  SRR4302535.4170975/94‑1 (MQ=60)

                                                                CAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCC                               <  SRR4302535.741907/94‑1 (MQ=60)

                                                                CAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCC                               >  SRR4302535.2898917/1‑94 (MQ=60)

                                                                CAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCC                               >  SRR4302535.674630/1‑94 (MQ=60)

                                                                CAGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCC                               >  SRR4302535.679557/1‑94 (MQ=60)

                                                                 AGCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCA                              >  SRR4302535.1683142/1‑94 (MQ=60)

                                                                  GCTGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAG                             <  SRR4302535.4141465/94‑1 (MQ=60)

                                                                    TGCGGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGAC                           <  SRR4302535.93499/94‑1 (MQ=60)

                                                                       GGCGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGT                        >  SRR4302535.2776999/1‑94 (MQ=60)

                                                                         CGGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAA                      <  SRR4302535.778648/94‑1 (MQ=60)

                                                                          GGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAA                     <  SRR4302535.4043146/94‑1 (MQ=60)

                                                                          GGCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAA                     >  SRR4302535.2066902/1‑94 (MQ=60)

                                                                           GCCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGTTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAA                    <  SRR4302535.1942418/94‑1 (MQ=60)

                                                                            CCAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAAT                   <  SRR4302535.1524701/94‑1 (MQ=60)

                                                                             CAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGTTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATC                  <  SRR4302535.1101398/94‑1 (MQ=60)

                                                                             CAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATC                  <  SRR4302535.2742403/94‑1 (MQ=60)

                                                                             CAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATC                  <  SRR4302535.557286/94‑1 (MQ=60)

                                                                             CAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATC                  >  SRR4302535.3369462/1‑94 (MQ=60)

                                                                             CAAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATC                  <  SRR4302535.1867387/94‑1 (MQ=60)

                                                                              AAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCG                 <  SRR4302535.3943924/94‑1 (MQ=60)

                                                                              AAACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCG                 >  SRR4302535.1103660/1‑94 (MQ=60)

                                                                               AACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGT                >  SRR4302535.3479780/1‑94 (MQ=60)

                                                                                ACAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTG               <  SRR4302535.850639/94‑1 (MQ=60)

                                                                                 CAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGC              >  SRR4302535.4551806/1‑94 (MQ=60)

                                                                                 CAGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGC              <  SRR4302535.2162974/94‑1 (MQ=60)

                                                                                  AGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCG             >  SRR4302535.4221691/1‑94 (MQ=60)

                                                                                  AGCGAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCG             >  SRR4302535.1334233/1‑94 (MQ=60)

                                                                                     GAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCAT          >  SRR4302535.301231/1‑94 (MQ=60)

                                                                                     GAAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCAT          >  SRR4302535.3435306/1‑94 (MQ=60)

                                                                                      AAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGGCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATG         >  SRR4302535.492525/1‑94 (MQ=60)

                                                                                      AAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATA         <  SRR4302535.1946030/94‑1 (MQ=60)

                                                                                      AAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATA         >  SRR4302535.3039306/1‑94 (MQ=60)

                                                                                      AAAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATA         >  SRR4302535.3259640/1‑94 (MQ=60)

                                                                                       AAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAGCAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAG        <  SRR4302535.435471/94‑1 (MQ=60)

                                                                                       AAGAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAG        >  SRR4302535.2346298/1‑94 (MQ=60)

                                                                                         GAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATCGCT      >  SRR4302535.1143086/1‑94 (MQ=60)

                                                                                         GAAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGCT      <  SRR4302535.1843216/94‑1 (MQ=60)

                                                                                          AAGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGCTG     >  SRR4302535.4678371/1‑94 (MQ=60)

                                                                                           AGGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGCTGC    >  SRR4302535.1763933/1‑94 (MQ=60)

                                                                                            GGCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGCTGCC   <  SRR4302535.3139311/94‑1 (MQ=60)

                                                                                             GCGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGCTGCCG  <  SRR4302535.3729320/94‑1 (MQ=60)

AAGGAAGGTCATGTAATAGCTGGCACCTGCGGAAAAGAGCACCACCAGCGATGCCAGAATACGCCAGCTGCGGCGGCCAAACAGCGAAAGAAGACGTAGTAAAAAGAAGGTCACCAGTACGGTGGCGGCCAGTTCAACAACAGCAGAAATGCCTTTCCAGACGGTAAAATCGTGCGCATAGCTGCCG  >  NC_000913/3707820‑3708006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`