Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,740,514	T→C	R51R (CGT→CGC)	yiaK →	putative dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,740,514	0	T	C	100.0%	674.3 / NA	211	R51R (CGT→CGC)	yiaK	putative dehydrogenase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (98/113); total (98/113)

Only 100 of 216 total aligned reads displayed.

GACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGTTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGC  >  NC_000913/3740425‑3740603

 aCAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTTACGGCGTTAATCGGTTCCCTCGCttca                                                                                       >  1:1091365/1‑93 (MQ=255)

 aCAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCttca                                                                                       <  1:2006981/93‑1 (MQ=255)

    gCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCttcattc                                                                                    <  1:1009122/93‑1 (MQ=255)

    gCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCttcattc                                                                                    <  1:2220238/93‑1 (MQ=255)

    gCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCttcattc                                                                                    <  1:1814506/93‑1 (MQ=255)

      gAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTcaa                                                                                  >  2:4223108/1‑93 (MQ=255)

       aaaCGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTcaac                                                                                 >  2:3532526/1‑93 (MQ=255)

       aaaCGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTcaac                                                                                 <  1:3669957/93‑1 (MQ=255)

       aaaCGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTcaac                                                                                 >  2:472890/1‑93 (MQ=255)

        aaCGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTcaaca                                                                                >  1:3917897/1‑93 (MQ=255)

         aCGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTcaacaa                                                                               <  2:2407354/93‑1 (MQ=255)

          cGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCaacaac                                                                              <  2:699194/93‑1 (MQ=255)

          cGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCaacaac                                                                              <  1:3579381/93‑1 (MQ=255)

           ggCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACt                                                                             <  2:1747086/93‑1 (MQ=255)

              tGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGa                                                                          >  1:4002569/1‑93 (MQ=255)

              tGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGa                                                                          <  2:2555368/93‑1 (MQ=255)

                 cGCCTGTGCGGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGaaaa                                                                       <  2:610675/93‑1 (MQ=255)

                 cGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGaaaa                                                                       <  1:3333305/93‑1 (MQ=255)

                  gCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAAc                                                                      <  2:3785720/93‑1 (MQ=255)

                  gCCTGTGCAGAGATGTCCGCCCGCACCACCAAATCCGGCGTTTATTCTCACGGCGTTAATCGTTGCCCTCGCTTCATTCAACACCTGGAAAAc                                                                      <  2:1059217/93‑1 (MQ=255)

                   ccTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACg                                                                     <  2:2076302/93‑1 (MQ=255)

                    cTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATGGTTTCCCTCGCTTCATTCAACAACTGGAAAACgg                                                                    <  1:2075562/93‑1 (MQ=255)

                    cTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACgg                                                                    >  1:283273/1‑93 (MQ=255)

                    cTGTGCAGAGATGTTCGCCCGCAACACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAActg                                                                    >  2:3106958/1‑91 (MQ=255)

                     tgtgCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGc                                                                   <  1:1202530/93‑1 (MQ=255)

                     agtgCAGAGATGTTCGCCCGCACCACCGAATCCTGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGc                                                                   <  1:4611062/92‑1 (MQ=255)

                       tgCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGa                                                                 <  2:2013398/93‑1 (MQ=255)

                         cAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAACACGGCGata                                                               >  2:594872/1‑93 (MQ=255)

                          agagATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGatat                                                              <  1:4405800/93‑1 (MQ=255)

                          agagATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGatat                                                              <  2:3689898/93‑1 (MQ=255)

                          agagATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGatat                                                              >  1:1555198/1‑93 (MQ=255)

                          agagATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGatat                                                              <  2:1846972/93‑1 (MQ=255)

                            agaTGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCa                                                            >  1:2861291/1‑93 (MQ=255)

                            agaTGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCa                                                            <  2:4370387/93‑1 (MQ=255)

                            agaTGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCa                                                            >  1:4482598/1‑93 (MQ=255)

                             gaTGTTCGCGCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCAt                                                           <  2:1243881/93‑1 (MQ=255)

                              aTGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCAtt                                                          >  2:849158/1‑93 (MQ=255)

                              aTGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGCTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCAtt                                                          <  1:3292828/93‑1 (MQ=255)

                               tGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTc                                                         <  2:3190905/93‑1 (MQ=255)

                                tttCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTcc                                                        <  2:1226894/92‑1 (MQ=255)

                                gTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTcc                                                        <  2:1439777/93‑1 (MQ=255)

                                gTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTcc                                                        <  1:3410893/93‑1 (MQ=255)

                                 ttCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCt                                                       <  1:4061558/93‑1 (MQ=255)

                                    gCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAt                                                    <  1:3797224/93‑1 (MQ=255)

                                    gCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAt                                                    <  1:1791698/93‑1 (MQ=255)

                                    gCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAt                                                    >  2:773341/1‑93 (MQ=255)

                                     cccGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATg                                                   <  1:1452359/93‑1 (MQ=255)

                                      ccGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGc                                                  >  1:3481460/1‑93 (MQ=255)

                                      ccGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGc                                                  <  2:1761967/93‑1 (MQ=255)

                                        gCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGccc                                                <  1:1063387/93‑1 (MQ=255)

                                         caccacCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGccca                                               <  1:3853356/93‑1 (MQ=255)

                                           ccaccGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAACACGGCGATATCATTCCTGATGcccaac                                             >  2:4422329/1‑93 (MQ=255)

                                           ccaccGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGcccaac                                             >  1:486679/1‑93 (MQ=255)

                                            caccGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGcccaacc                                            <  2:2342715/93‑1 (MQ=255)

                                            caccGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGcccaacc                                            <  1:804457/93‑1 (MQ=255)

                                               cGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGcccaacccaa                                         <  1:2502000/93‑1 (MQ=255)

                                                gAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCaaa                                        <  2:1150292/93‑1 (MQ=255)

                                                 aaTCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAAc                                       <  2:1368337/93‑1 (MQ=255)

                                                 aaTCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAAc                                       >  1:4298391/1‑93 (MQ=255)

                                                 aaTCCGGCGTTTATCCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGGGATATCATTCCTGATGCCCAACCCAAAc                                       <  2:1928454/93‑1 (MQ=255)

                                                  aTCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACg                                      >  1:4670011/1‑93 (MQ=255)

                                                    ccGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGta                                    <  1:1887927/93‑1 (MQ=255)

                                                       gCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATaa                                 >  2:1508349/1‑93 (MQ=255)

                                                       gCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATaa                                 >  2:3815347/1‑93 (MQ=255)

                                                        cGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAAc                                <  2:3345592/93‑1 (MQ=255)

                                                         gTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAAcc                               >  1:606485/1‑93 (MQ=255)

                                                         gTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAAcc                               <  1:2726356/93‑1 (MQ=255)

                                                         gTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAAcc                               >  2:4076727/1‑93 (MQ=255)

                                                         gTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAAcc                               >  1:3028022/1‑93 (MQ=255)

                                                          tttATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCa                              >  2:3624321/1‑93 (MQ=255)

                                                          tttATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCa                              >  1:2894264/1‑93 (MQ=255)

                                                            tATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGc                            >  2:4480562/1‑93 (MQ=255)

                                                             aTTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGcc                           <  2:4555351/93‑1 (MQ=255)

                                                              ttCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCt                          >  2:2854905/1‑93 (MQ=255)

                                                              ttCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCt                          <  2:3988838/93‑1 (MQ=255)

                                                                 tcACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCgg                       <  2:2494353/93‑1 (MQ=255)

                                                                 tcACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCgg                       <  2:2603074/93‑1 (MQ=255)

                                                                  cACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGgc                      >  2:3321086/1‑93 (MQ=255)

                                                                   aCGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGgcg                     >  2:4001851/1‑93 (MQ=255)

                                                                      gCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCaa                  <  2:423811/93‑1 (MQ=255)

                                                                      gCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCaa                  <  2:1545474/93‑1 (MQ=255)

                                                                        gTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAAtt                >  2:926073/1‑93 (MQ=255)

                                                                           aaTCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGaa             <  1:1390311/93‑1 (MQ=255)

                                                                            aTCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAAc            <  2:2909090/93‑1 (MQ=255)

                                                                             tCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACa           >  1:3059346/1‑93 (MQ=255)

                                                                             tCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACa           >  1:1746936/1‑93 (MQ=255)

                                                                              cGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAg          <  1:2545785/93‑1 (MQ=255)

                                                                              cGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAg          <  1:3689866/93‑1 (MQ=255)

                                                                               gTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGt         >  1:3159548/1‑93 (MQ=255)

                                                                               gTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGt         >  1:4368414/1‑93 (MQ=255)

                                                                               gTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGt         >  1:1714052/1‑93 (MQ=255)

                                                                               ctttCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGt         <  2:2152817/92‑1 (MQ=255)

                                                                                tttCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTg        <  2:3847224/93‑1 (MQ=255)

                                                                                tttCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTg        >  1:2373372/1‑93 (MQ=255)

                                                                                   cccTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGa     >  1:133642/1‑93 (MQ=255)

                                                                                    ccTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGAc    <  2:2830944/93‑1 (MQ=255)

                                                                                     cTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGTCGCAATTGAACAGTggggtc   >  2:528762/1‑90 (MQ=255)

                                                                                     cTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACg   >  1:4176199/1‑93 (MQ=255)

                                                                                     cTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACg   >  2:3261394/1‑93 (MQ=255)

                                                                                      tCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGc  >  1:3884526/1‑93 (MQ=255)

GACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGTTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGC  >  NC_000913/3740425‑3740603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGTTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCAG  >  NC_000913/3740421‑3740607

CGTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGC                                                                                               >  SRR4302535.2126573/1‑94 (MQ=60)

CGTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGC                                                                                               <  SRR4302535.2475522/94‑1 (MQ=60)

CGTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGGTTATTCTCACGGCGTTAATCGTTTCCCTCGC                                                                                               >  SRR4302535.4706938/1‑94 (MQ=60)

 GTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCT                                                                                              <  SRR4302535.1035251/94‑1 (MQ=60)

    GACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTTACGGCGTTAATCGGTTCCCTCGCTTCA                                                                                           >  SRR4302535.1099142/1‑94 (MQ=60)

     ACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCAT                                                                                          <  SRR4302535.2021439/94‑1 (MQ=60)

     ACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCAT                                                                                          >  SRR4302535.2609532/1‑94 (MQ=60)

      CAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATT                                                                                         <  SRR4302535.1752725/94‑1 (MQ=60)

       AGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTC                                                                                        <  SRR4302535.654992/94‑1 (MQ=60)

        GCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCA                                                                                       <  SRR4302535.1016292/94‑1 (MQ=60)

        GCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCA                                                                                       <  SRR4302535.1827626/94‑1 (MQ=60)

        GCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCA                                                                                       <  SRR4302535.2236039/94‑1 (MQ=60)

         CGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGCTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAA                                                                                      >  SRR4302535.3712734/1‑94 (MQ=60)

          GAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAAC                                                                                     >  SRR4302535.2472395/1‑94 (MQ=60)

           AAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACA                                                                                    <  SRR4302535.1206652/94‑1 (MQ=60)

           AAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACA                                                                                    >  SRR4302535.3944701/1‑94 (MQ=60)

           AAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACA                                                                                    <  SRR4302535.3695372/94‑1 (MQ=60)

             ACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAAC                                                                                  <  SRR4302535.146626/94‑1 (MQ=60)

              CGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACT                                                                                 <  SRR4302535.3604192/94‑1 (MQ=60)

                GCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGG                                                                               <  SRR4302535.1061569/94‑1 (MQ=60)

                 CTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGA                                                                              <  SRR4302535.3066467/94‑1 (MQ=60)

                 CTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGA                                                                              >  SRR4302535.4029948/1‑94 (MQ=60)

                   GACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAA                                                                            >  SRR4302535.4205685/1‑94 (MQ=60)

                     CGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAAC                                                                          <  SRR4302535.3356505/94‑1 (MQ=60)

                       CCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGG                                                                        <  SRR4302535.3701715/94‑1 (MQ=60)

                       CCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGG                                                                        >  SRR4302535.285248/1‑94 (MQ=60)

                        CTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATGGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGC                                                                       <  SRR4302535.2090513/94‑1 (MQ=60)

                        CTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGC                                                                       <  SRR4302535.4494937/94‑1 (MQ=60)

                         TGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCG                                                                      <  SRR4302535.1211161/94‑1 (MQ=60)

                         AGTGCAGAGATGTTCGCCCGCACCACCGAATCCTGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCG                                                                      <  SRR4302535.4642386/94‑1 (MQ=60)

                          GTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGA                                                                     >  SRR4302535.3858728/1‑94 (MQ=60)

                             CAGAGATGTTCGCGCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATAT                                                                  <  SRR4302535.4329725/94‑1 (MQ=60)

                             CAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATAT                                                                  >  SRR4302535.1566406/1‑94 (MQ=60)

                              AGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATC                                                                 <  SRR4302535.4435953/94‑1 (MQ=60)

                              AGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATC                                                                 >  SRR4302535.1559854/1‑94 (MQ=60)

                               GAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCA                                                                >  SRR4302535.2881559/1‑94 (MQ=60)

                               GAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCA                                                                >  SRR4302535.4513362/1‑94 (MQ=60)

                                AGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCAT                                                               >  SRR4302535.2136926/1‑94 (MQ=60)

                                  ATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGCTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTC                                                             <  SRR4302535.3315723/94‑1 (MQ=60)

                                   TGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCC                                                            <  SRR4302535.4527255/94‑1 (MQ=60)

                                    GTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCT                                                           <  SRR4302535.3434624/94‑1 (MQ=60)

                                     TTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTG                                                          <  SRR4302535.4089360/94‑1 (MQ=60)

                                       CGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAT                                                        <  SRR4302535.4647549/94‑1 (MQ=60)

                                       CGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAT                                                        <  SRR4302535.2807310/94‑1 (MQ=60)

                                        GCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATG                                                       <  SRR4302535.3823399/94‑1 (MQ=60)

                                        GCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATG                                                       <  SRR4302535.1804651/94‑1 (MQ=60)

                                         CCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGC                                                      >  SRR4302535.3505641/1‑94 (MQ=60)

                                         CCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGC                                                      <  SRR4302535.1462750/94‑1 (MQ=60)

                                            GCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCA                                                   <  SRR4302535.1070955/94‑1 (MQ=60)

                                             CACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAA                                                  <  SRR4302535.3879863/94‑1 (MQ=60)

                                              ACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAAC                                                 >  SRR4302535.3545340/1‑94 (MQ=60)

                                              ACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAAC                                                 >  SRR4302535.490091/1‑94 (MQ=60)

                                                CACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCC                                               >  SRR4302535.3417589/1‑94 (MQ=60)

                                                CACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCC                                               <  SRR4302535.810106/94‑1 (MQ=60)

                                                  CCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAA                                             >  SRR4302535.1841981/1‑94 (MQ=60)

                                                   CGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAA                                            <  SRR4302535.2520044/94‑1 (MQ=60)

                                                    GAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAAC                                           >  SRR4302535.1093111/1‑94 (MQ=60)

                                                    GAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAAC                                           >  SRR4302535.4327805/1‑94 (MQ=60)

                                                     AATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACG                                          >  SRR4302535.4701558/1‑94 (MQ=60)

                                                       TCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGACCAACCCAAACGTA                                        >  SRR4302535.1986386/1‑94 (MQ=60)

                                                        CCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTAT                                       <  SRR4302535.1901527/94‑1 (MQ=60)

                                                         CGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATA                                      <  SRR4302535.1822646/94‑1 (MQ=60)

                                                          GGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAA                                     <  SRR4302535.3496851/94‑1 (MQ=60)

                                                          GGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAA                                     >  SRR4302535.1956693/1‑94 (MQ=60)

                                                          GGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAA                                     >  SRR4302535.2656474/1‑94 (MQ=60)

                                                            CGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACC                                   >  SRR4302535.3049217/1‑94 (MQ=60)

                                                            CGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACC                                   >  SRR4302535.610721/1‑94 (MQ=60)

                                                            CGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACC                                   <  SRR4302535.3821623/94‑1 (MQ=60)

                                                             GTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCA                                  <  SRR4302535.2745830/94‑1 (MQ=60)

                                                             GTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCA                                  >  SRR4302535.2914735/1‑94 (MQ=60)

                                                              TTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAG                                 <  SRR4302535.3634310/94‑1 (MQ=60)

                                                               TTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGC                                <  SRR4302535.3963956/94‑1 (MQ=60)

                                                                TATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACAGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCC                               >  SRR4302535.3321068/1‑94 (MQ=60)

                                                                 ATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCT                              <  SRR4302535.3139440/94‑1 (MQ=60)

                                                                 ATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCT                              >  SRR4302535.2907826/1‑94 (MQ=60)

                                                                  TTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTC                             <  SRR4302535.1436230/94‑1 (MQ=60)

                                                                           CGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATT                    <  SRR4302535.4094177/94‑1 (MQ=60)

                                                                           CGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATT                    >  SRR4302535.4411663/1‑94 (MQ=60)

                                                                            GTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTG                   >  SRR4302535.2335224/1‑94 (MQ=60)

                                                                            GTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTG                   >  SRR4302535.1378627/1‑94 (MQ=60)

                                                                             TTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGA                  >  SRR4302535.3927322/1‑94 (MQ=60)

                                                                              TAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAA                 <  SRR4302535.476973/94‑1 (MQ=60)

                                                                              TAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAA                 >  SRR4302535.1645182/1‑94 (MQ=60)

                                                                               AATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAAC                <  SRR4302535.1400232/94‑1 (MQ=60)

                                                                                ATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACA               >  SRR4302535.1759571/1‑94 (MQ=60)

                                                                                ATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACA               <  SRR4302535.3886257/94‑1 (MQ=60)

                                                                                ATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACA               >  SRR4302535.3080744/1‑94 (MQ=60)

                                                                                  CGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGT             >  SRR4302535.1726447/1‑94 (MQ=60)

                                                                                  CGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGT             >  SRR4302535.4398310/1‑94 (MQ=60)

                                                                                  CGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGT             <  SRR4302535.2564110/94‑1 (MQ=60)

                                                                                  CGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGT             <  SRR4302535.3715405/94‑1 (MQ=60)

                                                                                  CGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGT             <  SRR4302535.1343200/94‑1 (MQ=60)

                                                                                  CGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGT             >  SRR4302535.3181471/1‑94 (MQ=60)

                                                                                  CGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAAACAGCCTCGGCGCAATTGAACAGT             >  SRR4302535.2997344/1‑94 (MQ=60)

                                                                                   GTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTG            <  SRR4302535.93176/94‑1 (MQ=60)

                                                                                   GTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTG            >  SRR4302535.2061671/1‑94 (MQ=60)

                                                                                   GTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTG            <  SRR4302535.403383/94‑1 (MQ=60)

                                                                                   GTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTG            >  SRR4302535.2390420/1‑94 (MQ=60)

                                                                                   GTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTG            >  SRR4302535.3130575/1‑94 (MQ=60)

                                                                                   GTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATATCCAACCCAAACGTATAACCACCCTCGGCGCAATTGAACAGTG            >  SRR4302535.2525781/1‑94 (MQ=60)

                                                                                      TCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGA         >  SRR4302535.134577/1‑94 (MQ=60)

                                                                                      TCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGA         >  SRR4302535.536929/1‑94 (MQ=60)

                                                                                      TCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGA         >  SRR4302535.3223814/1‑94 (MQ=60)

                                                                                       CCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGAC        >  SRR4302535.2862177/1‑94 (MQ=60)

                                                                                       CCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGAC        <  SRR4302535.4608565/94‑1 (MQ=60)

                                                                                        CCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACG       >  SRR4302535.4204788/1‑94 (MQ=60)

                                                                                         CTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGC      >  SRR4302535.3911174/1‑94 (MQ=60)

                                                                                         CTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGC      >  SRR4302535.407449/1‑94 (MQ=60)

                                                                                         CTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGC      >  SRR4302535.1780944/1‑94 (MQ=60)

                                                                                          TCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCC     >  SRR4302535.489765/1‑94 (MQ=60)

                                                                                            GCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCC   >  SRR4302535.4199269/1‑94 (MQ=60)

                                                                                             CTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCAG  >  SRR4302535.2635144/1‑94 (MQ=60)

                                                                                             CTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCAG  >  SRR4302535.3515403/1‑94 (MQ=60)

CGTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGTTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCAG  >  NC_000913/3740421‑3740607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`