Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,759,164	T→C	Y140C (TAT→TGT)	yibF ←	putative S‑transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,759,164	0	T	C	100.0%	768.0 / NA	239	Y140C (TAT→TGT)	yibF	putative S‑transferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (128/111); total (128/111)

Only 100 of 244 total aligned reads displayed.

ACGCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGATATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCCTGT  >  NC_000913/3759074‑3759253

  gcggcgGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATcc                                                                                       <  1:1805634/93‑1 (MQ=255)

   cggcggAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCt                                                                                      <  1:280839/93‑1 (MQ=255)

   cggcggAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCt                                                                                      <  1:2233212/93‑1 (MQ=255)

   cggcggAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCt                                                                                      <  2:609806/93‑1 (MQ=255)

    ggcggAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCtt                                                                                     >  2:3922065/1‑93 (MQ=255)

     gcggAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTc                                                                                    <  1:429561/93‑1 (MQ=255)

       ggAAATTGAGATATCCGACGGCAGAGGCAATGGCGATAGTCGCCAGATTGACGGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCa                                                                                  <  1:741479/93‑1 (MQ=255)

        gAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAg                                                                                 <  1:1449980/93‑1 (MQ=255)

        gAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAg                                                                                 >  1:4624474/1‑93 (MQ=255)

         aaaTTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGc                                                                                >  1:4169229/1‑93 (MQ=255)

          aaTTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGca                                                                               >  1:3085160/1‑93 (MQ=255)

            ttGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGcaca                                                                             >  2:382681/1‑93 (MQ=255)

             tGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACAt                                                                            <  1:2521061/93‑1 (MQ=255)

              gagaTATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATc                                                                           >  1:983843/1‑93 (MQ=255)

              gagaTATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATc                                                                           <  1:1070790/93‑1 (MQ=255)

               agaTATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATcc                                                                          >  2:2484507/1‑93 (MQ=255)

                gaTATCCGACGGCACATGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCa                                                                         <  2:3668489/93‑1 (MQ=255)

                gaTATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCa                                                                         >  2:491097/1‑93 (MQ=255)

                gaTATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCa                                                                         >  1:2684214/1‑93 (MQ=255)

                  tatCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGa                                                                       >  1:1177496/1‑93 (MQ=255)

                  tatCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGa                                                                       >  2:2867823/1‑93 (MQ=255)

                        aCGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCgg                                                                 <  1:3777165/93‑1 (MQ=255)

                         cGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGt                                                                >  2:2539951/1‑93 (MQ=255)

                          ggCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGtt                                                               <  1:114000/93‑1 (MQ=255)

                            cacaGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGa                                                             <  2:4411523/93‑1 (MQ=255)

                             acaGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGAt                                                            >  1:825187/1‑93 (MQ=255)

                               aGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGAttt                                                          >  1:64149/1‑93 (MQ=255)

                               aGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGAttt                                                          >  1:3960607/1‑93 (MQ=255)

                                ggCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGAtttt                                                         >  2:3515803/1‑93 (MQ=255)

                                 gCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTtc                                                        <  2:2317506/93‑1 (MQ=255)

                                 gCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTtc                                                        <  1:3593136/93‑1 (MQ=255)

                                   aaTGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTtctc                                                      >  1:2751043/1‑93 (MQ=255)

                                   aaTGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTtctc                                                      >  2:1332562/1‑93 (MQ=255)

                                   aaTGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTtctc                                                      >  1:328654/1‑93 (MQ=255)

                                    aTGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTcc                                                     >  1:2858826/1‑93 (MQ=255)

                                    aTGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTcc                                                     <  2:3435679/93‑1 (MQ=255)

                                    aTGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTcc                                                     <  1:917633/93‑1 (MQ=255)

                                       gCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGc                                                  >  1:3040680/1‑93 (MQ=255)

                                        cGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCt                                                 >  1:182174/1‑93 (MQ=255)

                                         gATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGGTTTTCTCCCGCTg                                                >  2:3471963/1‑93 (MQ=255)

                                         gATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTg                                                >  1:3152622/1‑93 (MQ=255)

                                         gATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTg                                                >  1:1306629/1‑93 (MQ=255)

                                         gATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTg                                                >  1:360845/1‑93 (MQ=255)

                                         gATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTg                                                <  1:768004/93‑1 (MQ=255)

                                         gATAGTCGCCAGATTGACCGTATCGGTTTTGAGAGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTg                                                >  1:440156/1‑93 (MQ=255)

                                          aTAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTgg                                               >  2:2947074/1‑93 (MQ=255)

                                           tAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGc                                              >  2:4609209/1‑93 (MQ=255)

                                             gTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGt                                            >  2:1306400/1‑93 (MQ=255)

                                              tCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTa                                           >  2:561697/1‑93 (MQ=255)

                                               cGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTaa                                          >  2:1898292/1‑93 (MQ=255)

                                                gCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAAc                                         <  2:3206588/93‑1 (MQ=255)

                                                  cAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACaa                                       <  1:1932192/93‑1 (MQ=255)

                                                   aGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAAt                                      >  1:1324606/1‑93 (MQ=255)

                                                   aGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAAt                                      >  1:293667/1‑93 (MQ=255)

                                                    gATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAAtt                                     <  1:3889723/93‑1 (MQ=255)

                                                      ttGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCa                                   <  1:1554025/93‑1 (MQ=255)

                                                      ttGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCa                                   <  2:1677760/93‑1 (MQ=255)

                                                      ttGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCa                                   >  1:405703/1‑93 (MQ=255)

                                                      ttGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCa                                   <  2:4267940/93‑1 (MQ=255)

                                                      ttGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCa                                   >  1:4192916/1‑93 (MQ=255)

                                                      ttGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCa                                   >  2:4511876/1‑93 (MQ=255)

                                                      ttGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCa                                   <  1:3515560/93‑1 (MQ=255)

                                                       tGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCAt                                  <  1:1664315/93‑1 (MQ=255)

                                                         aCCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCt                                <  2:3716870/93‑1 (MQ=255)

                                                          ccGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCtt                               >  2:4571097/1‑93 (MQ=255)

                                                           cGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTc                              <  1:345239/93‑1 (MQ=255)

                                                            gTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCa                             >  1:1743988/1‑93 (MQ=255)

                                                            gTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCa                             <  2:2973793/93‑1 (MQ=255)

                                                             tATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAg                            >  2:4367401/1‑93 (MQ=255)

                                                             tATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAg                            >  2:3972777/1‑93 (MQ=255)

                                                             tATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAg                            >  1:288544/1‑93 (MQ=255)

                                                               tCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGAc                          >  1:952693/1‑93 (MQ=255)

                                                               tCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGAc                          >  2:3167147/1‑93 (MQ=255)

                                                               tCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGAc                          <  1:1489711/93‑1 (MQ=255)

                                                                tggTTTTGAGTGTGCAATCGACCAGACATCCTTCCAGCACATCCAGGCTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGAct                         <  2:2819857/92‑1 (MQ=255)

                                                                cGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGAct                         <  1:225337/93‑1 (MQ=255)

                                                                  gTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGActgc                       >  2:2153347/1‑93 (MQ=255)

                                                                  gTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGActgc                       <  1:219116/93‑1 (MQ=255)

                                                                    tttGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGActgctg                     <  2:892915/93‑1 (MQ=255)

                                                                     ttGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACtgctgc                    <  1:2575388/93‑1 (MQ=255)

                                                                     ttGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACtgctgc                    <  1:3986992/93‑1 (MQ=255)

                                                                     ttGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATCTTCTCCCGCTGGCGTAACAATTCATCTTCAGACtgctgc                    <  1:2418437/93‑1 (MQ=255)

                                                                      tGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTgcg                   <  2:1067/93‑1 (MQ=255)

                                                                       gAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTgcgc                  >  2:1986298/1‑93 (MQ=255)

                                                                         gtgtGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGcgccg                >  2:1614386/1‑93 (MQ=255)

                                                                         gtgtGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGcgccg                >  1:2089552/1‑93 (MQ=255)

                                                                         gtgtGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGcgccg                >  2:4296389/1‑93 (MQ=255)

                                                                          tgtgCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGcgccgc               <  1:2822512/93‑1 (MQ=255)

                                                                           gtgCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCt              >  1:4449419/1‑93 (MQ=255)

                                                                           gtgCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCt              <  2:3272848/93‑1 (MQ=255)

                                                                            tgCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTg             <  2:1032648/93‑1 (MQ=255)

                                                                            tgCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTg             >  1:1200103/1‑93 (MQ=255)

                                                                            tgCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTg             >  2:867121/1‑93 (MQ=255)

                                                                              ccATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGa           <  1:1237065/93‑1 (MQ=255)

                                                                               cATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTGACAATTCATCTTCAGACTGCTGCGCCGCTGGAc          >  2:4038797/1‑93 (MQ=255)

                                                                                aTCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGAcg         >  2:3313734/1‑93 (MQ=255)

                                                                                    aCCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGcc     >  1:4265289/1‑93 (MQ=255)

                                                                                    aCCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGcc     <  2:2386570/93‑1 (MQ=255)

                                                                                    aCCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGcc     <  2:618122/93‑1 (MQ=255)

                                                                                       aGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCCTGt  >  2:4162267/1‑93 (MQ=255)

ACGCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGATATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCCTGT  >  NC_000913/3759074‑3759253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCAACGCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGATATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCCTGTTCAC  >  NC_000913/3759071‑3759257

GCAACGCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGAC                                                                                               <  SRR4302535.1856391/94‑1 (MQ=60)

 CAACGCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACA                                                                                              >  SRR4302535.3215514/1‑94 (MQ=60)

 CAACGCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACA                                                                                              >  SRR4302535.1183111/1‑94 (MQ=60)

 CAACGCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACA                                                                                              >  SRR4302535.1196059/1‑94 (MQ=60)

    CGCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCC                                                                                           >  SRR4302535.4519946/1‑94 (MQ=60)

     GCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCT                                                                                          <  SRR4302535.1818682/94‑1 (MQ=60)

     GCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCT                                                                                          <  SRR4302535.3943923/94‑1 (MQ=60)

     GCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCT                                                                                          <  SRR4302535.3392663/94‑1 (MQ=60)

     GCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGGGCCATCGACCAGACATCCT                                                                                          >  SRR4302535.2677137/1‑94 (MQ=60)

      CGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTT                                                                                         <  SRR4302535.282797/94‑1 (MQ=60)

      CGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTT                                                                                         <  SRR4302535.2249094/94‑1 (MQ=60)

       GGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTC                                                                                        <  SRR4302535.1507270/94‑1 (MQ=60)

        GCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCC                                                                                       <  SRR4302535.432547/94‑1 (MQ=60)

          GGAAATTGAGATATCCGACGGCAGAGGCAATGGCGATAGTCGCCAGATTGACGGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAG                                                                                     <  SRR4302535.746689/94‑1 (MQ=60)

          GGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAG                                                                                     <  SRR4302535.1939258/94‑1 (MQ=60)

          GGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAG                                                                                     >  SRR4302535.4655876/1‑94 (MQ=60)

          GGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAG                                                                                     <  SRR4302535.3172322/94‑1 (MQ=60)

           GAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGC                                                                                    >  SRR4302535.4197780/1‑94 (MQ=60)

           GAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGC                                                                                    <  SRR4302535.1460350/94‑1 (MQ=60)

            AAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCA                                                                                   >  SRR4302535.3106652/1‑94 (MQ=60)

            AAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCA                                                                                   <  SRR4302535.1430793/94‑1 (MQ=60)

            AAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCA                                                                                   <  SRR4302535.2206717/94‑1 (MQ=60)

             AATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCAC                                                                                  >  SRR4302535.1595732/1‑94 (MQ=60)

             AATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGAACGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCAC                                                                                  >  SRR4302535.284208/1‑94 (MQ=60)

                TGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTTTCCGTATCGGTTTTGAGTGTGCAATCGACCAGACATACTTCCAGCACATC                                                                               >  SRR4302535.1468431/1‑94 (MQ=60)

                TGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATC                                                                               <  SRR4302535.2539227/94‑1 (MQ=60)

                TGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATC                                                                               >  SRR4302535.990830/1‑94 (MQ=60)

                 GAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCC                                                                              <  SRR4302535.2210622/94‑1 (MQ=60)

                 GAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCC                                                                              <  SRR4302535.1078402/94‑1 (MQ=60)

                 GAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATAGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCC                                                                              <  SRR4302535.4411801/94‑1 (MQ=60)

                  AGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCA                                                                             <  SRR4302535.2552969/94‑1 (MQ=60)

                  AGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCA                                                                             >  SRR4302535.2703408/1‑94 (MQ=60)

                   GATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAG                                                                            >  SRR4302535.98403/1‑94 (MQ=60)

                    ATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGA                                                                           >  SRR4302535.3772711/1‑94 (MQ=60)

                    ATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGA                                                                           >  SRR4302535.1185899/1‑94 (MQ=60)

                     TATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGAC                                                                          <  SRR4302535.1303041/94‑1 (MQ=60)

                        CCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGC                                                                       <  SRR4302535.2883960/94‑1 (MQ=60)

                         CGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCG                                                                      <  SRR4302535.2796369/94‑1 (MQ=60)

                           ACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGT                                                                    <  SRR4302535.3803204/94‑1 (MQ=60)

                            CGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTT                                                                   <  SRR4302535.674548/94‑1 (MQ=60)

                            CGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTT                                                                   >  SRR4302535.3072097/1‑94 (MQ=60)

                             GGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTG                                                                  <  SRR4302535.3066591/94‑1 (MQ=60)

                             GGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTG                                                                  <  SRR4302535.114800/94‑1 (MQ=60)

                               CACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGAT                                                                >  SRR4302535.2743660/1‑94 (MQ=60)

                               CACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGAT                                                                >  SRR4302535.830970/1‑94 (MQ=60)

                               CACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGAT                                                                <  SRR4302535.2487795/94‑1 (MQ=60)

                                 CAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTT                                                              >  SRR4302535.64633/1‑94 (MQ=60)

                                 CAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTT                                                              >  SRR4302535.3987655/1‑94 (MQ=60)

                                  AGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTT                                                             >  SRR4302535.4470147/1‑94 (MQ=60)

                                  AGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTT                                                             >  SRR4302535.3592526/1‑94 (MQ=60)

                                  AGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTT                                                             >  SRR4302535.2300247/1‑94 (MQ=60)

                                  AGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTT                                                             >  SRR4302535.942742/1‑94 (MQ=60)

                                  AGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTT                                                             >  SRR4302535.3254922/1‑94 (MQ=60)

                                    GCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCT                                                           <  SRR4302535.3618072/94‑1 (MQ=60)

                                    GCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCT                                                           <  SRR4302535.2909864/94‑1 (MQ=60)

                                     CAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTC                                                          >  SRR4302535.2014013/1‑94 (MQ=60)

                                     CAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTC                                                          >  SRR4302535.330933/1‑94 (MQ=60)

                                     CAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTC                                                          >  SRR4302535.2770654/1‑94 (MQ=60)

                                      AATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTTAGTGTTCCCTGGATCAGACATCCTTCCAGTACATCTAGACTGAGGTTGATTTTCTCC                                                         >  SRR4302535.563334/1‑94 (MQ=53)

                                      AATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCC                                                         >  SRR4302535.2879080/1‑94 (MQ=60)

                                      AATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCC                                                         >  SRR4302535.140356/1‑94 (MQ=60)

                                       ATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCC                                                        <  SRR4302535.924141/94‑1 (MQ=60)

                                       ATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCC                                                        >  SRR4302535.1093991/1‑94 (MQ=60)

                                        TGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCG                                                       <  SRR4302535.4494360/94‑1 (MQ=60)

                                        TGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCG                                                       <  SRR4302535.498557/94‑1 (MQ=60)

                                         GGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGC                                                      >  SRR4302535.3061981/1‑94 (MQ=60)

                                          GCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCT                                                     >  SRR4302535.183434/1‑94 (MQ=60)

                                          GCGATAGTCGCCAGATAGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCT                                                     <  SRR4302535.2755354/94‑1 (MQ=60)

                                           CGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTG                                                    >  SRR4302535.1315960/1‑94 (MQ=60)

                                           CGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTG                                                    >  SRR4302535.3174529/1‑94 (MQ=60)

                                           CGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTG                                                    >  SRR4302535.363340/1‑94 (MQ=60)

                                           CGATAGTCGCCAGATTGACCGTATCGGTTTTGAGAGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTG                                                    >  SRR4302535.443238/1‑94 (MQ=60)

                                            GATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGG                                                   <  SRR4302535.773410/94‑1 (MQ=60)

                                             ATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGC                                                  >  SRR4302535.418127/1‑94 (MQ=60)

                                             ATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGC                                                  >  SRR4302535.3791784/1‑94 (MQ=60)

                                               AGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGT                                                >  SRR4302535.4204688/1‑94 (MQ=60)

                                               AGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGT                                                >  SRR4302535.1200506/1‑94 (MQ=60)

                                                GTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTA                                               <  SRR4302535.4323545/94‑1 (MQ=60)

                                                 TCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAA                                              >  SRR4302535.2860872/1‑94 (MQ=60)

                                                   GCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACA                                            >  SRR4302535.3976737/1‑94 (MQ=60)

                                                   GCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACA                                            >  SRR4302535.1241947/1‑94 (MQ=60)

                                                   GCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACA                                            >  SRR4302535.1761135/1‑94 (MQ=60)

                                                   GCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACA                                            <  SRR4302535.1590455/94‑1 (MQ=60)

                                                   GCCAGATAGACCGTAACGGTTTTGAGTGTGCCATCGACCAGACATACTTCCAGCAAATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACA                                            <  SRR4302535.4718579/94‑1 (MQ=60)

                                                     CAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAAT                                          <  SRR4302535.1946114/94‑1 (MQ=60)

                                                     CAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAAT                                          >  SRR4302535.295719/1‑94 (MQ=60)

                                                     CAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAAT                                          >  SRR4302535.1334062/1‑94 (MQ=60)

                                                     CAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATACAGACTGCGGCTGATTTTCTCCCGCTGGCGTAACAAT                                          >  SRR4302535.785221/1‑94 (MQ=60)

                                                      AGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATT                                         >  SRR4302535.3221682/1‑94 (MQ=60)

                                                      AGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATT                                         >  SRR4302535.2252107/1‑94 (MQ=60)

                                                      AGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATT                                         >  SRR4302535.1194868/1‑94 (MQ=60)

                                                       GATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTC                                        <  SRR4302535.3916394/94‑1 (MQ=60)

                                                       GATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTC                                        >  SRR4302535.1689371/1‑94 (MQ=60)

                                                        ATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCA                                       <  SRR4302535.1832110/94‑1 (MQ=60)

                                                        ATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCA                                       >  SRR4302535.4221608/1‑94 (MQ=60)

                                                        ATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCA                                       >  SRR4302535.408544/1‑94 (MQ=60)

                                                         TTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCAT                                      <  SRR4302535.3539988/94‑1 (MQ=60)

                                                         TTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCAT                                      <  SRR4302535.3545160/94‑1 (MQ=60)

                                                         TTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCAT                                      <  SRR4302535.849721/94‑1 (MQ=60)

                                                         TTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCAT                                      <  SRR4302535.1565222/94‑1 (MQ=60)

                                                          TGACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATC                                     <  SRR4302535.1676342/94‑1 (MQ=60)

                                                           GACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCT                                    <  SRR4302535.3619195/94‑1 (MQ=60)

                                                           GACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCT                                    >  SRR4302535.4005051/1‑94 (MQ=60)

                                                           GACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCT                                    >  SRR4302535.2841349/1‑94 (MQ=60)

                                                            ACCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTT                                   >  SRR4302535.4281870/1‑94 (MQ=60)

                                                             CCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTC                                  <  SRR4302535.2396474/94‑1 (MQ=60)

                                                             CCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTC                                  >  SRR4302535.3006215/1‑94 (MQ=60)

                                                             CCGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTC                                  >  SRR4302535.4280379/1‑94 (MQ=60)

                                                              CGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCA                                 >  SRR4302535.2566786/1‑94 (MQ=60)

                                                              CGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCA                                 <  SRR4302535.347618/94‑1 (MQ=60)

                                                              CGTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCA                                 >  SRR4302535.1756607/1‑94 (MQ=60)

                                                               GTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAG                                >  SRR4302535.1328914/1‑94 (MQ=60)

                                                               GTATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAG                                >  SRR4302535.290565/1‑94 (MQ=60)

                                                                TATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGA                               <  SRR4302535.4066820/94‑1 (MQ=60)

                                                                TATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGA                               >  SRR4302535.4032997/1‑94 (MQ=60)

                                                                 ATCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGAC                              >  SRR4302535.959445/1‑94 (MQ=60)

                                                                  TCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACT                             <  SRR4302535.4424545/94‑1 (MQ=60)

                                                                  TCGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACT                             <  SRR4302535.1500403/94‑1 (MQ=60)

                                                                   CGGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTG                            <  SRR4302535.226887/94‑1 (MQ=60)

                                                                    GGTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGC                           <  SRR4302535.3486320/94‑1 (MQ=60)

                                                                     GTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCT                          <  SRR4302535.220625/94‑1 (MQ=60)

                                                                     GTTTTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCT                          <  SRR4302535.1761218/94‑1 (MQ=60)

                                                                        TTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCG                       <  SRR4302535.4014252/94‑1 (MQ=60)

                                                                        TTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCG                       <  SRR4302535.977848/94‑1 (MQ=60)

                                                                        TTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCG                       <  SRR4302535.2593899/94‑1 (MQ=60)

                                                                        TTGAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATCTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCG                       <  SRR4302535.2435850/94‑1 (MQ=60)

                                                                          GAGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCC                     <  SRR4302535.1171227/94‑1 (MQ=60)

                                                                           AGTGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCG                    >  SRR4302535.2104609/1‑94 (MQ=60)

                                                                             TGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCT                  >  SRR4302535.4479937/1‑94 (MQ=60)

                                                                             TGTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCT                  <  SRR4302535.2842550/94‑1 (MQ=60)

                                                                              GTGCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTG                 >  SRR4302535.1208702/1‑94 (MQ=60)

                                                                                GCCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGA               >  SRR4302535.648270/1‑94 (MQ=60)

                                                                                 CCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGAC              <  SRR4302535.1245901/94‑1 (MQ=60)

                                                                                 CCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGAC              <  SRR4302535.766221/94‑1 (MQ=60)

                                                                                 CCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGAC              <  SRR4302535.1921384/94‑1 (MQ=60)

                                                                                 CCATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGAC              >  SRR4302535.2937262/1‑94 (MQ=60)

                                                                                  CATCGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACG             >  SRR4302535.2127217/1‑94 (MQ=60)

                                                                                     CGACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGC          >  SRR4302535.3860938/1‑94 (MQ=60)

                                                                                      GACCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCC         >  SRR4302535.4294498/1‑94 (MQ=60)

                                                                                        CCAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCCTG       <  SRR4302535.1252162/94‑1 (MQ=60)

                                                                                         CAGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGAGACTGT      >  SRR4302535.871415/1‑94 (MQ=60)

                                                                                          AGACATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCCTGTT     >  SRR4302535.4408180/1‑94 (MQ=60)

                                                                                             CATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCCTGTTCAC  >  SRR4302535.1806130/1‑94 (MQ=60)

                                                                                             CATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCCTGTTCAC  >  SRR4302535.2988223/1‑94 (MQ=60)

                                                                                             CATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCCTGTTCAC  >  SRR4302535.14068/1‑94 (MQ=60)

GCAACGCGGCGGAAATTGAGATATCCGACGGCACAGGCAATGGCGATAGTCGCCAGATTGACCGTATCGGTTTTGAGTGTGCCATCGACCAGATATCCTTCCAGCACATCCAGACTGCGGTTGATTTTCTCCCGCTGGCGTAACAATTCATCTTCAGACTGCTGCGCCGCTGGACGCGCCTGTTCAC  >  NC_000913/3759071‑3759257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`