Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,765,234	G→A	G129G (GGG→GGA)	yibJ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,765,234	0	G	A	100.0%	449.4 / NA	128	G129G (GGG→GGA)	yibJ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (58/70); total (58/70)

Only 100 of 130 total aligned reads displayed.

GCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCC  >  NC_000913/3765185‑3765323

gCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCgg                                                >  1:2705620/1‑93 (MQ=12)

 cTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGt                                               >  1:1455581/1‑93 (MQ=255)

  tattatGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTc                                              >  1:1102085/1‑93 (MQ=255)

  tattatGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTc                                              >  2:588439/1‑93 (MQ=255)

  tattatGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTc                                              >  1:724210/1‑93 (MQ=255)

  tattatGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTc                                              <  1:2100136/93‑1 (MQ=255)

   attatGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCa                                             >  1:1046655/1‑93 (MQ=255)

   attatGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCa                                             >  1:2422607/1‑93 (MQ=255)

    ttatGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGCTGGAATTTTTATCAGTATCCGTTGAATCCTGTCAt                                            >  1:2924818/1‑93 (MQ=11)

    ttatGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCAt                                            >  2:3175831/1‑93 (MQ=255)

      atGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaa                                          >  1:3839617/1‑93 (MQ=255)

      atGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaa                                          <  2:594338/93‑1 (MQ=255)

       tGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGTGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         <  1:1138441/93‑1 (MQ=255)

       tGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         >  2:1936527/1‑93 (MQ=255)

       tGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         <  1:4667936/93‑1 (MQ=255)

       tGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         <  2:3876510/93‑1 (MQ=255)

        gACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAt                                        <  2:3094229/93‑1 (MQ=255)

        gACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAt                                        <  1:1332711/93‑1 (MQ=255)

         aCCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATg                                       >  1:3332718/1‑93 (MQ=255)

          cccGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGt                                      <  2:3977309/93‑1 (MQ=255)

           ccGCTTCTGGTGCGGTATATCACTCTGGCTCTGATTGAGCTTAAGGGATGATGGAATTTTTATCAGTATCCTTTGAATCCGGTCATAAATGTa                                     <  2:3362157/93‑1 (MQ=14)

           ccGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTa                                     >  2:4104390/1‑93 (MQ=255)

           ccGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTa                                     <  2:3259728/93‑1 (MQ=255)

             gctgctGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa                                   >  1:2211283/1‑93 (MQ=255)

             gctgctGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa                                   >  1:1926207/1‑93 (MQ=255)

             gctgctGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa                                   <  2:2716884/93‑1 (MQ=255)

              ctgctgGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAt                                  <  1:2216024/93‑1 (MQ=255)

              ctgctgGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAt                                  <  2:3852599/93‑1 (MQ=255)

               tGCTGGGGCGGTATATCACTCATGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 <  2:372187/93‑1 (MQ=255)

               tGCTGGGGCGGTATATCACTCAGGATCCGATTGGATTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 <  1:3764544/93‑1 (MQ=255)

               tGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 >  1:3217372/1‑93 (MQ=255)

               tGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 >  1:402558/1‑93 (MQ=255)

               tGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 >  2:3856122/1‑93 (MQ=255)

               tGCTGGGGCGGTATATCACTCAGGATCCGATTAGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 <  1:2664625/93‑1 (MQ=255)

               cgctggggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGAATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 <  1:146767/89‑1 (MQ=17)

                 ctggggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCg                               <  2:4496371/91‑1 (MQ=255)

                   ggggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCa                             >  1:221122/1‑93 (MQ=255)

                   ggggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCa                             <  1:1359086/93‑1 (MQ=255)

                    gggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCaa                            <  2:2178669/93‑1 (MQ=255)

                    gggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCaa                            >  2:4352927/1‑93 (MQ=255)

                    gggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCaa                            <  1:3345110/93‑1 (MQ=255)

                     ggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAg                           >  2:3657478/1‑93 (MQ=255)

                     ggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAg                           <  2:103516/93‑1 (MQ=255)

                     ggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAg                           >  2:3557392/1‑93 (MQ=255)

                      gCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAgg                          <  2:166046/93‑1 (MQ=255)

                      gCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAgg                          <  2:3500276/93‑1 (MQ=255)

                       cGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGt                         >  1:3849642/1‑93 (MQ=255)

                       cGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGt                         <  2:1227749/93‑1 (MQ=255)

                        tgTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGtt                        <  1:3523365/92‑1 (MQ=255)

                        ggTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGtt                        >  1:1088575/1‑93 (MQ=255)

                        ggTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGtt                        <  2:1803731/93‑1 (MQ=255)

                        ggTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGtt                        <  2:1065753/93‑1 (MQ=255)

                        ggTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGtt                        <  2:4359144/93‑1 (MQ=255)

                         gTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGttt                       >  2:2715816/1‑93 (MQ=255)

                         gTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGttt                       <  2:3329274/93‑1 (MQ=255)

                         gTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGttt                       >  1:4283932/1‑93 (MQ=255)

                          tataTCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTg                      <  1:4310798/93‑1 (MQ=255)

                          tataTCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTg                      >  1:4036/1‑93 (MQ=255)

                          tataTCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTg                      >  1:4052146/1‑93 (MQ=255)

                           atatCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTgg                     >  2:1469926/1‑93 (MQ=255)

                            tatCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt                    <  1:3463339/93‑1 (MQ=255)

                            tatCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt                    >  2:2884156/1‑93 (MQ=255)

                            tatCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt                    >  1:3511115/1‑93 (MQ=255)

                             atCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGtt                   >  2:1489472/1‑93 (MQ=255)

                             atCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGtt                   >  1:4054233/1‑93 (MQ=255)

                              tCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTg                  <  2:3961302/93‑1 (MQ=255)

                              tCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTg                  >  2:112780/1‑93 (MQ=255)

                              tCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTg                  <  2:3450719/93‑1 (MQ=255)

                              tCACTCAGGAGCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTg                  <  1:1193526/93‑1 (MQ=255)

                               cACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGa                 <  2:3909458/93‑1 (MQ=255)

                                 cTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGata               <  1:516514/93‑1 (MQ=255)

                                 cTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGata               <  1:3563462/93‑1 (MQ=255)

                                 cTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGata               >  2:165419/1‑93 (MQ=255)

                                 cTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGata               <  2:1519240/93‑1 (MQ=255)

                                  tCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGatat              <  1:1697294/93‑1 (MQ=255)

                                  tCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGatat              <  1:4572515/93‑1 (MQ=255)

                                  tCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGatat              <  1:954835/93‑1 (MQ=255)

                                  tCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGatat              <  1:2590472/93‑1 (MQ=255)

                                    aGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATaa            <  1:663/93‑1 (MQ=255)

                                    aGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATaa            >  1:2811881/1‑93 (MQ=255)

                                    aGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATaa            >  1:3446818/1‑93 (MQ=255)

                                     ggATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATaaa           >  2:3048601/1‑93 (MQ=255)

                                      gATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAt          <  1:2796599/93‑1 (MQ=255)

                                      gATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAt          <  1:545229/93‑1 (MQ=255)

                                      gATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAt          >  1:2016130/1‑93 (MQ=255)

                                       aTCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAtt         >  1:367230/1‑93 (MQ=255)

                                        tCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAttt        >  1:3622458/1‑93 (MQ=255)

                                        acagATTGGTCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAttt        <  2:676018/90‑1 (MQ=255)

                                         ccGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTta       <  1:2093075/93‑1 (MQ=255)

                                         ccGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTta       <  1:1524083/93‑1 (MQ=255)

                                           gATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTtata     <  1:4664253/93‑1 (MQ=255)

                                           gATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTtata     >  2:1379308/1‑93 (MQ=255)

                                            aTTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAc    >  2:3743373/1‑93 (MQ=255)

                                            aTTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAc    <  2:1913606/93‑1 (MQ=255)

                                            aTTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAc    >  1:1959173/1‑93 (MQ=255)

                                             ttGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAcc   >  1:184458/1‑93 (MQ=255)

                                             ttGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCACAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAcc   >  1:4243495/1‑93 (MQ=255)

                                              tGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAccc  <  2:1209237/93‑1 (MQ=255)

                                              tGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAccc  >  2:1933891/1‑93 (MQ=255)

                                              tGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAccc  <  2:2378462/93‑1 (MQ=255)

GCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCC  >  NC_000913/3765185‑3765323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCCCG  >  NC_000913/3765141‑3765325

GCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGG                                                                                             <  SRR4302535.3755720/94‑1 (MQ=0)

GCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGG                                                                                             <  SRR4302535.2792360/94‑1 (MQ=0)

 CAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGAC                                                                                            <  SRR4302535.1964781/94‑1 (MQ=0)

 CAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGAC                                                                                            <  SRR4302535.2544349/94‑1 (MQ=0)

 CAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGC                                                                                            >  SRR4302535.789095/1‑94 (MQ=0)

  AGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACT                                                                                           <  SRR4302535.193453/94‑1 (MQ=0)

  AGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACT                                                                                           >  SRR4302535.568410/1‑94 (MQ=0)

  AGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCT                                                                                           >  SRR4302535.3560657/1‑94 (MQ=0)

   GCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTG                                                                                          <  SRR4302535.3743446/94‑1 (MQ=0)

    CAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGAGCTGA                                                                                         >  SRR4302535.2310540/1‑94 (MQ=0)

     AGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAA                                                                                        <  SRR4302535.1470910/94‑1 (MQ=0)

     AGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAA                                                                                        >  SRR4302535.2259346/1‑94 (MQ=0)

      GTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAG                                                                                       <  SRR4302535.217749/94‑1 (MQ=0)

      GTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAG                                                                                       <  SRR4302535.1461392/94‑1 (MQ=0)

      GTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAG                                                                                       <  SRR4302535.2916570/94‑1 (MQ=0)

       TATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGG                                                                                      <  SRR4302535.4302234/94‑1 (MQ=0)

        ATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGG                                                                                     <  SRR4302535.1732992/94‑1 (MQ=0)

         TGATGAGGAGTCCGGCCTGTATTACAGCCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGG                                                                                    <  SRR4302535.1613805/94‑1 (MQ=0)

          GATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTTGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGT                                                                                   <  SRR4302535.668579/94‑1 (MQ=0)

           ATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGG                                                                                  >  SRR4302535.1859566/1‑94 (MQ=0)

           ATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGG                                                                                  <  SRR4302535.735535/94‑1 (MQ=0)

             GAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGAT                                                                                <  SRR4302535.3355112/94‑1 (MQ=0)

              AGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATG                                                                               <  SRR4302535.1529537/94‑1 (MQ=0)

                GAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGA                                                                             >  SRR4302535.1685021/1‑94 (MQ=0)

                 AGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAA                                                                            <  SRR4302535.1610372/94‑1 (MQ=0)

                  GTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAAT                                                                           <  SRR4302535.3702322/94‑1 (MQ=0)

                  GTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGAAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAAT                                                                           >  SRR4302535.2532947/1‑94 (MQ=0)

                   TCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATT                                                                          <  SRR4302535.1819243/94‑1 (MQ=0)

                   TCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATT                                                                          >  SRR4302535.129148/1‑94 (MQ=0)

                   TCCGCCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATT                                                                          <  SRR4302535.2238522/94‑1 (MQ=0)

                    CCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTT                                                                         <  SRR4302535.1070430/94‑1 (MQ=0)

                      GGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTT                                                                       >  SRR4302535.4259215/1‑94 (MQ=0)

                        CCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTAT                                                                     <  SRR4302535.341011/94‑1 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATC                                                                    <  SRR4302535.2081879/94‑1 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATC                                                                    >  SRR4302535.606285/1‑94 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATC                                                                    >  SRR4302535.2187364/1‑94 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATC                                                                    >  SRR4302535.2027606/1‑94 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATC                                                                    >  SRR4302535.809660/1‑94 (MQ=0)

                           GTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAG                                                                  >  SRR4302535.3772415/1‑94 (MQ=0)

                           GTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAG                                                                  >  SRR4302535.2847104/1‑94 (MQ=0)

                            TATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGT                                                                 >  SRR4302535.4062174/1‑94 (MQ=0)

                            TATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGT                                                                 <  SRR4302535.946513/94‑1 (MQ=0)

                            TATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGT                                                                 >  SRR4302535.1815804/1‑94 (MQ=0)

                             ATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTA                                                                >  SRR4302535.414779/1‑94 (MQ=0)

                              TTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTAT                                                               <  SRR4302535.4594056/94‑1 (MQ=0)

                               TACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATC                                                              <  SRR4302535.3000743/94‑1 (MQ=0)

                                 CAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCG                                                            <  SRR4302535.4624697/94‑1 (MQ=0)

                                 CAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCG                                                            <  SRR4302535.3101184/94‑1 (MQ=0)

                                  AACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGT                                                           >  SRR4302535.718756/1‑94 (MQ=0)

                                  AACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGT                                                           <  SRR4302535.3833054/94‑1 (MQ=0)

                                  AACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGT                                                           <  SRR4302535.1681265/94‑1 (MQ=0)

                                   ACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTT                                                          <  SRR4302535.3835821/94‑1 (MQ=0)

                                    CCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTG                                                         >  SRR4302535.3347056/1‑94 (MQ=0)

                                     CGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGA                                                        >  SRR4302535.1219920/1‑94 (MQ=0)

                                        CACCGCTATTATGGCCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATC                                                     <  SRR4302535.1918309/94‑1 (MQ=0)

                                        CACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATC                                                     >  SRR4302535.1791384/1‑94 (MQ=0)

                                        CACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATC                                                     <  SRR4302535.681141/94‑1 (MQ=0)

                                         CCCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCC                                                    <  SRR4302535.2859652/94‑1 (MQ=0)

                                         ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCC                                                    >  SRR4302535.4418122/1‑94 (MQ=0)

                                         ACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCA                                                    >  SRR4302535.1495221/1‑94 (MQ=0)

                                           CGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGG                                                  >  SRR4302535.2724955/1‑94 (MQ=2)

                                            GCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGT                                                 >  SRR4302535.1466000/1‑94 (MQ=4)

                                            GCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGT                                                 <  SRR4302535.910122/94‑1 (MQ=4)

                                            GCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGT                                                 >  SRR4302535.1416153/1‑94 (MQ=4)

                                             CTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTC                                                >  SRR4302535.1109960/1‑94 (MQ=7)

                                             CTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTC                                                >  SRR4302535.388196/1‑94 (MQ=7)

                                             CTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTC                                                >  SRR4302535.729293/1‑94 (MQ=7)

                                              TATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCA                                               >  SRR4302535.1054075/1‑94 (MQ=9)

                                              TATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCA                                               >  SRR4302535.2440059/1‑94 (MQ=9)

                                              TATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCA                                               <  SRR4302535.2115283/94‑1 (MQ=9)

                                               ATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGCTGGAATTTTTATCAGTATCCGTTGAATCCTGTCAT                                              >  SRR4302535.2945440/1‑94 (MQ=0)

                                                 TATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAA                                            >  SRR4302535.3866080/1‑94 (MQ=19)

                                                   TGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGTGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAT                                          <  SRR4302535.1146557/94‑1 (MQ=23)

                                                   TGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAT                                          <  SRR4302535.4699479/94‑1 (MQ=24)

                                                    GACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATG                                         <  SRR4302535.3772492/94‑1 (MQ=26)

                                                    GACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATG                                         >  SRR4302535.3355913/1‑94 (MQ=26)

                                                    GACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATG                                         <  SRR4302535.1342216/94‑1 (MQ=26)

                                                        CGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGA                                     >  SRR4302535.2227035/1‑94 (MQ=36)

                                                        CGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGA                                     >  SRR4302535.1940090/1‑94 (MQ=36)

                                                          CTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATC                                   <  SRR4302535.2231803/94‑1 (MQ=41)

                                                          CTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATC                                   >  SRR4302535.405380/1‑94 (MQ=41)

                                                          CTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATC                                   >  SRR4302535.3239657/1‑94 (MQ=41)

                                                           cgctGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGAATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCC                                  <  SRR4302535.147788/90‑1 (MQ=44)

                                                           TGCTGGGGCGGTATATCACTCAGGATCCGATTGGATTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCC                                  <  SRR4302535.3790548/94‑1 (MQ=42)

                                                           TGCTGGGGCGGTATATCACTCAGGATCCGATTAGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCC                                  <  SRR4302535.2683701/94‑1 (MQ=42)

                                                            GCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCG                                 <  SRR4302535.2339533/94‑1 (MQ=47)

                                                              TGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCA                               >  SRR4302535.222647/1‑94 (MQ=52)

                                                               GGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAA                              <  SRR4302535.1368804/94‑1 (MQ=55)

                                                                GGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAG                             <  SRR4302535.3368409/94‑1 (MQ=58)

                                                                  GCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGT                           >  SRR4302535.3876134/1‑94 (MQ=60)

                                                                   CGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTT                          >  SRR4302535.1096322/1‑94 (MQ=60)

                                                                    TGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTT                         <  SRR4302535.3547834/94‑1 (MQ=60)

                                                                    GGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTT                         >  SRR4302535.4313238/1‑94 (MQ=60)

                                                                     GTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTG                        >  SRR4302535.4071/1‑94 (MQ=60)

                                                                     GTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTG                        >  SRR4302535.4079887/1‑94 (MQ=60)

                                                                      TATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGG                       <  SRR4302535.4340286/94‑1 (MQ=60)

                                                                       ATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGT                      >  SRR4302535.3028504/1‑94 (MQ=60)

                                                                       ATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGT                      >  SRR4302535.3535512/1‑94 (MQ=60)

                                                                        TATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTT                     >  SRR4302535.4081993/1‑94 (MQ=60)

                                                                        TATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTT                     <  SRR4302535.3487411/94‑1 (MQ=60)

                                                                        TATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTT                     <  SRR4302535.3464414/94‑1 (MQ=60)

                                                                         ATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTG                    <  SRR4302535.3581938/94‑1 (MQ=60)

                                                                          TCACTCAGGATCCGATTGGACTGATGGGGGGATGGACTTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGA                   <  SRR4302535.4717094/94‑1 (MQ=60)

                                                                          TCACTCAGGAGCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGA                   <  SRR4302535.1202078/94‑1 (MQ=60)

                                                                           CACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGAT                  <  SRR4302535.2166526/94‑1 (MQ=60)

                                                                            ACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATA                 >  SRR4302535.4470396/1‑94 (MQ=60)

                                                                             CTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATAT                <  SRR4302535.520126/94‑1 (MQ=60)

                                                                             CTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATAT                <  SRR4302535.3588169/94‑1 (MQ=60)

                                                                             CTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATAT                <  SRR4302535.2734006/94‑1 (MQ=60)

                                                                              TCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATA               <  SRR4302535.4603687/94‑1 (MQ=60)

                                                                              TCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATA               <  SRR4302535.961601/94‑1 (MQ=60)

                                                                              TCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATA               <  SRR4302535.1709562/94‑1 (MQ=60)

                                                                              TCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATA               <  SRR4302535.2609073/94‑1 (MQ=60)

                                                                               CAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAA              >  SRR4302535.2831866/1‑94 (MQ=60)

                                                                               CAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAA              >  SRR4302535.3470786/1‑94 (MQ=60)

                                                                                AGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAA             <  SRR4302535.671/94‑1 (MQ=60)

                                                                                 GGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAT            >  SRR4302535.2030655/1‑94 (MQ=60)

                                                                                  GATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATT           <  SRR4302535.2816502/94‑1 (MQ=60)

                                                                                  GATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATT           <  SRR4302535.1651756/94‑1 (MQ=60)

                                                                                  GATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATT           >  SRR4302535.369763/1‑94 (MQ=60)

                                                                                  GATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATT           <  SRR4302535.549039/94‑1 (MQ=60)

                                                                                   ATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATCAATGTAGATCCGCAAGGTTTGGTTGATATAAATTT          >  SRR4302535.1179982/1‑94 (MQ=60)

                                                                                   ATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTT          >  SRR4302535.3647569/1‑94 (MQ=60)

                                                                                     CCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTAT        <  SRR4302535.2017919/94‑1 (MQ=60)

                                                                                     CCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTAT        <  SRR4302535.1535064/94‑1 (MQ=60)

                                                                                     CCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTAT        <  SRR4302535.2108161/94‑1 (MQ=60)

                                                                                       GATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAC      >  SRR4302535.1973304/1‑94 (MQ=60)

                                                                                       GATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAC      <  SRR4302535.4695789/94‑1 (MQ=60)

                                                                                        ATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACC     >  SRR4302535.185729/1‑94 (MQ=60)

                                                                                        ATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCACAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACC     >  SRR4302535.4272539/1‑94 (MQ=60)

                                                                                         TTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCC    <  SRR4302535.4255090/94‑1 (MQ=60)

                                                                                          TGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCACGGTTTGGTTGATATAAATTTATACCCC   >  SRR4302535.3345923/1‑94 (MQ=60)

                                                                                           GGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCCCG  <  SRR4302535.4425204/94‑1 (MQ=60)

GCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCCCG  >  NC_000913/3765141‑3765325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`