Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,786,097	A→G	M124V (ATG→GTG)	b3614 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,786,097	0	A	G	100.0%	899.8 / NA	282	M124V (ATG→GTG)	b3614	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (129/153); total (129/153)

Only 100 of 286 total aligned reads displayed.

CTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACATGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTA  >  NC_000913/3786007‑3786186

ctacgcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTg                                                                                         <  1:1738962/93‑1 (MQ=255)

ctacgcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTg                                                                                         <  2:696787/93‑1 (MQ=255)

 tacgcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTgg                                                                                        <  2:2616783/93‑1 (MQ=255)

   cgcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgc                                                                                      <  1:3188650/93‑1 (MQ=255)

    gcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgca                                                                                     <  2:1307829/93‑1 (MQ=255)

     cccGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgcag                                                                                    >  2:3128153/1‑93 (MQ=255)

     cccGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgcag                                                                                    >  2:555936/1‑93 (MQ=255)

      ccGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgcagc                                                                                   >  2:1691493/1‑93 (MQ=255)

        ggAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACACCCACGTGGGCAGCaa                                                                                 <  1:3459208/93‑1 (MQ=255)

        ggAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCaa                                                                                 <  1:2798173/93‑1 (MQ=255)

          agaTGAGCAGCGACGAACTTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCACTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGa                                                                               >  1:225178/1‑93 (MQ=255)

          agaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGa                                                                               <  1:2204205/93‑1 (MQ=255)

          agaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGa                                                                               <  1:3021501/93‑1 (MQ=255)

           gaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATACCGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAt                                                                              <  2:1072988/93‑1 (MQ=255)

           gaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAt                                                                              <  1:500380/93‑1 (MQ=255)

           gaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAt                                                                              <  1:578625/93‑1 (MQ=255)

           gaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAt                                                                              >  2:3371792/1‑93 (MQ=255)

           gaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAt                                                                              <  1:3891806/93‑1 (MQ=255)

            aTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATg                                                                             >  1:813650/1‑93 (MQ=255)

            aTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATg                                                                             <  1:2071101/93‑1 (MQ=255)

            aTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATg                                                                             <  2:2003333/93‑1 (MQ=255)

            aTGAGCAGCGACGAAATTGAACGCATTATTCGTAGTGCGATCAAAAACAAGACCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAtt                                                                             <  1:4679029/93‑2 (MQ=255)

              gAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGAc                                                                           <  2:4485339/93‑1 (MQ=255)

               agcagcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGAcc                                                                          >  2:4317444/1‑93 (MQ=255)

               agcagcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGAcc                                                                          <  2:4056807/93‑1 (MQ=255)

                gcagcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAGCCACGTGGGCAGCAAGATGACct                                                                         <  2:469388/93‑1 (MQ=255)

                gcagcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACct                                                                         <  2:1017901/93‑1 (MQ=255)

                gcagcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACct                                                                         <  1:1773452/93‑1 (MQ=255)

                 gagcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACctc                                                                        <  2:1967406/92‑1 (MQ=255)

                 cagcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACctc                                                                        <  2:2966392/93‑1 (MQ=255)

                    cgacgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTaa                                                                     <  2:4087203/93‑1 (MQ=255)

                    cgacgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTaa                                                                     <  1:944967/93‑1 (MQ=255)

                    cgacgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTaa                                                                     >  1:2906160/1‑93 (MQ=255)

                     gacgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAc                                                                    >  1:3487978/1‑93 (MQ=255)

                     gacgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAc                                                                    >  2:617464/1‑93 (MQ=255)

                      acgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAcc                                                                   >  2:1128103/1‑93 (MQ=255)

                      acgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAcc                                                                   >  1:265831/1‑93 (MQ=255)

                       cgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCt                                                                  <  1:2942066/93‑1 (MQ=255)

                        gaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTCACCTg                                                                 >  2:2550595/1‑93 (MQ=255)

                        gaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTg                                                                 >  1:441659/1‑93 (MQ=255)

                          aaTTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGtt                                                               >  2:3298749/1‑93 (MQ=255)

                          aaTTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGtt                                                               >  1:3737927/1‑93 (MQ=255)

                          aaTTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGtt                                                               <  1:1314950/93‑1 (MQ=255)

                          aaTTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGtt                                                               <  1:848061/93‑1 (MQ=255)

                           aTTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTCACCTGttt                                                              >  1:355960/1‑93 (MQ=255)

                           aTTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGttt                                                              <  1:2119107/93‑1 (MQ=255)

                            ttGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTg                                                             >  1:2874024/1‑93 (MQ=255)

                            ttGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTg                                                             <  2:3672023/93‑1 (MQ=255)

                            ttGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTg                                                             <  1:973113/93‑1 (MQ=255)

                            ttGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTg                                                             <  2:2359178/93‑1 (MQ=255)

                              gAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGt                                                           <  1:1045662/93‑1 (MQ=255)

                               aGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTa                                                          <  1:4531592/93‑1 (MQ=255)

                               aGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTa                                                          >  2:1873728/1‑93 (MQ=255)

                                gcgcATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTAt                                                         <  1:3269491/93‑1 (MQ=255)

                                gcgcATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTAt                                                         >  2:722897/1‑93 (MQ=255)

                                  gcATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGc                                                       <  2:3173883/93‑1 (MQ=255)

                                  gcATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGc                                                       >  1:1544170/1‑93 (MQ=255)

                                   cATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCa                                                      <  1:2862081/93‑1 (MQ=255)

                                   cATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCa                                                      <  2:4528451/93‑1 (MQ=255)

                                   cATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCa                                                      >  1:1853822/1‑93 (MQ=255)

                                   cATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGCGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCa                                                      >  1:3899898/1‑93 (MQ=255)

                                     ttattCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGa                                                    >  1:863327/1‑93 (MQ=255)

                                     ttattCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGa                                                    >  1:4667829/1‑93 (MQ=255)

                                       attCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGaaa                                                  <  2:928473/93‑1 (MQ=255)

                                       attCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGaaa                                                  <  2:1485943/93‑1 (MQ=255)

                                        ttCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAg                                                 <  2:396487/93‑1 (MQ=255)

                                        ttCGTAGGGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAg                                                 <  2:1411366/93‑1 (MQ=255)

                                         tCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGt                                                <  2:645564/93‑1 (MQ=255)

                                         tCGTAGTGCCGTCAAAAACGTTCCCTATTCCGTGGGGATCAACAACCCCGTGCGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGt                                                <  2:3827398/93‑1 (MQ=255)

                                           gTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGa                                              <  1:437068/93‑1 (MQ=255)

                                              gTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGc                                           <  2:4180696/93‑1 (MQ=255)

                                              gTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGc                                           <  1:2688518/93‑1 (MQ=255)

                                              gTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGc                                           >  1:2478556/1‑93 (MQ=255)

                                                 cGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAgg                                        >  1:2305671/1‑93 (MQ=255)

                                                  ggTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGgc                                       <  1:4218359/93‑1 (MQ=255)

                                                  ggTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGgc                                       <  2:3363832/93‑1 (MQ=255)

                                                   gTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGgcg                                      >  2:2892849/1‑93 (MQ=255)

                                                     cAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCACGCGCt                                    >  1:743398/1‑93 (MQ=255)

                                                        tAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGa                                 >  2:2150710/1‑93 (MQ=255)

                                                         aaCGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAg                                <  2:3233042/93‑1 (MQ=255)

                                                            gTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGt                             <  1:4109007/93‑1 (MQ=255)

                                                            gTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGAAGAAAGTGATGCAGGCGCTGGAGCGt                             >  2:806037/1‑93 (MQ=255)

                                                             tGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGtt                            >  2:3051643/1‑93 (MQ=255)

                                                               cccTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTAc                          <  2:3511826/93‑1 (MQ=255)

                                                               cccTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTAc                          <  2:3762160/93‑1 (MQ=255)

                                                               cccTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTAc                          >  2:2804678/1‑93 (MQ=255)

                                                                ccTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACa                         <  1:277931/93‑1 (MQ=255)

                                                                 cTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACaa                        >  1:1221632/1‑93 (MQ=255)

                                                                 cTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACaa                        <  1:3654062/93‑1 (MQ=255)

                                                                    tGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCt                     <  1:2341033/93‑1 (MQ=255)

                                                                      ccGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCttt                   >  2:1626828/1‑93 (MQ=255)

                                                                       cGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTa                  <  1:4254558/93‑1 (MQ=255)

                                                                       cGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTa                  <  1:1460376/93‑1 (MQ=255)

                                                                          ggggATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACtt               <  1:2538075/93‑1 (MQ=255)

                                                                          ggggATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACtt               >  1:4026264/1‑93 (MQ=255)

                                                                           gggATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTc              <  2:4368159/93‑1 (MQ=255)

                                                                            ggATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTcc             <  2:1785667/93‑1 (MQ=255)

                                                                             gATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCt            >  1:316980/1‑93 (MQ=255)

                                                                                 aacaacCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGAc        >  1:3845695/1‑93 (MQ=255)

                                                                                    aacCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGc     <  1:1949202/93‑1 (MQ=255)

CTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACATGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTA  >  NC_000913/3786007‑3786186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACGCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACATGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTA  >  NC_000913/3786004‑3786186

ACGCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACG                                                                                           <  SRR4302535.4210611/94‑1 (MQ=60)

ACGCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACG                                                                                           >  SRR4302535.3831497/1‑94 (MQ=60)

 CGCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGT                                                                                          >  SRR4302535.1000062/1‑94 (MQ=60)

   CTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGG                                                                                        >  SRR4302535.2356223/1‑94 (MQ=60)

   CTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGG                                                                                        >  SRR4302535.2351476/1‑94 (MQ=60)

   CTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGG                                                                                        <  SRR4302535.1751529/94‑1 (MQ=60)

    GACGCACGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGG                                                                                       <  SRR4302535.1757696/94‑1 (MQ=60)

      CGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCA                                                                                     <  SRR4302535.3210701/94‑1 (MQ=60)

        CCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGC                                                                                   >  SRR4302535.3709192/1‑94 (MQ=60)

        CCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGC                                                                                   <  SRR4302535.2273782/94‑1 (MQ=60)

        CCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGC                                                                                   <  SRR4302535.4116196/94‑1 (MQ=60)

           GGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACACCCACGTGGGCAGCAAG                                                                                <  SRR4302535.3483258/94‑1 (MQ=60)

           GGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAG                                                                                <  SRR4302535.2818084/94‑1 (MQ=60)

           GGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAG                                                                                <  SRR4302535.2069649/94‑1 (MQ=60)

            GAGATGAGCAGCGACGAACTTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCACTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGA                                                                               >  SRR4302535.226727/1‑94 (MQ=60)

             AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                              <  SRR4302535.3042660/94‑1 (MQ=60)

             AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                              >  SRR4302535.2698429/1‑94 (MQ=60)

             AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                              <  SRR4302535.2219907/94‑1 (MQ=60)

             AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                              >  SRR4302535.973008/1‑94 (MQ=60)

              GATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATG                                                                             >  SRR4302535.819356/1‑94 (MQ=60)

              GATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATG                                                                             <  SRR4302535.503884/94‑1 (MQ=60)

              GATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATG                                                                             <  SRR4302535.582692/94‑1 (MQ=60)

              GATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATG                                                                             <  SRR4302535.3918490/94‑1 (MQ=60)

              AATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATG                                                                             <  SRR4302535.3907085/94‑1 (MQ=60)

               ATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGA                                                                            <  SRR4302535.2086027/94‑1 (MQ=60)

               ATGAGCAGCGACGAAATTGAACGCATTATTCGTAGTGCGATCAAAAACAAGACCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATTA                                                                            <  SRR4302535.4710607/94‑1 (MQ=60)

                 GAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACC                                                                          <  SRR4302535.2209620/94‑1 (MQ=60)

                 GAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACC                                                                          <  SRR4302535.2574622/94‑1 (MQ=60)

                  AGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCT                                                                         <  SRR4302535.3208810/94‑1 (MQ=60)

                   GCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGCCCTC                                                                        >  SRR4302535.2814087/1‑94 (MQ=60)

                   GCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTC                                                                        <  SRR4302535.1786302/94‑1 (MQ=60)

                   GCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTC                                                                        <  SRR4302535.3495492/94‑1 (MQ=60)

                    CAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCT                                                                       >  SRR4302535.367735/1‑94 (MQ=60)

                    CAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCT                                                                       <  SRR4302535.351687/94‑1 (MQ=60)

                     AGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTA                                                                      <  SRR4302535.4669137/94‑1 (MQ=60)

                     AGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTA                                                                      <  SRR4302535.589904/94‑1 (MQ=60)

                      GCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAA                                                                     >  SRR4302535.2926701/1‑94 (MQ=60)

                       CGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAC                                                                    <  SRR4302535.3029606/94‑1 (MQ=60)

                       CGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAC                                                                    >  SRR4302535.827695/1‑94 (MQ=60)

                       CGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAC                                                                    <  SRR4302535.491406/94‑1 (MQ=60)

                       CGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAC                                                                    <  SRR4302535.951659/94‑1 (MQ=60)

                       CGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAC                                                                    >  SRR4302535.3512193/1‑94 (MQ=60)

                        GACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACC                                                                   >  SRR4302535.267676/1‑94 (MQ=60)

                          CGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTG                                                                 >  SRR4302535.211800/1‑94 (MQ=60)

                          CGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTG                                                                 <  SRR4302535.2962755/94‑1 (MQ=60)

                          CGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTG                                                                 >  SRR4302535.444752/1‑94 (MQ=60)

                          CGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCGATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTG                                                                 >  SRR4302535.2531087/1‑94 (MQ=60)

                           GAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGT                                                                <  SRR4302535.2166734/94‑1 (MQ=60)

                           GAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGT                                                                >  SRR4302535.2944011/1‑94 (MQ=60)

                            AAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTT                                                               >  SRR4302535.3763797/1‑94 (MQ=60)

                            AAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTT                                                               <  SRR4302535.4706729/94‑1 (MQ=60)

                             AATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTCACCTGTTT                                                              >  SRR4302535.358417/1‑94 (MQ=60)

                             AATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTT                                                              <  SRR4302535.1324344/94‑1 (MQ=60)

                             AATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTT                                                              <  SRR4302535.854026/94‑1 (MQ=60)

                              ATTGAGCGCATTATTCGTAGTTCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTG                                                             <  SRR4302535.3790874/94‑1 (MQ=60)

                              ATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTG                                                             <  SRR4302535.862340/94‑1 (MQ=60)

                              ATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTG                                                             >  SRR4302535.2254133/1‑94 (MQ=60)

                              ATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTG                                                             <  SRR4302535.2134392/94‑1 (MQ=60)

                              ATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTG                                                             >  SRR4302535.2102969/1‑94 (MQ=60)

                              ATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTG                                                             >  SRR4302535.2894389/1‑94 (MQ=60)

                              ATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGAGCAGCAAGATGACCTCTAACCTGTTTG                                                             <  SRR4302535.4569026/94‑1 (MQ=60)

                               TTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGG                                                            <  SRR4302535.2748530/94‑1 (MQ=60)

                               TTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGG                                                            <  SRR4302535.980018/94‑1 (MQ=60)

                                 GAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTA                                                          <  SRR4302535.1053071/94‑1 (MQ=60)

                                  AGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTAT                                                         <  SRR4302535.4562610/94‑1 (MQ=60)

                                   GCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATG                                                        <  SRR4302535.3789105/94‑1 (MQ=60)

                                   GCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATG                                                        <  SRR4302535.3292203/94‑1 (MQ=60)

                                    CGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGC                                                       >  SRR4302535.1555295/1‑94 (MQ=60)

                                    CGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGC                                                       <  SRR4302535.4290780/94‑1 (MQ=60)

                                    CGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGC                                                       >  SRR4302535.4122518/1‑94 (MQ=60)

                                     GCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCA                                                      <  SRR4302535.1127129/94‑1 (MQ=60)

                                     GCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCA                                                      <  SRR4302535.1690741/94‑1 (MQ=60)

                                     GCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCA                                                      >  SRR4302535.1867175/1‑94 (MQ=60)

                                     GCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCA                                                      <  SRR4302535.3283154/94‑1 (MQ=60)

                                     GCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGCGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCA                                                      >  SRR4302535.3926613/1‑94 (MQ=60)

                                      CATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAG                                                     <  SRR4302535.2882355/94‑1 (MQ=60)

                                      CATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAG                                                     >  SRR4302535.4039010/1‑94 (MQ=60)

                                      CATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAG                                                     >  SRR4302535.230949/1‑94 (MQ=60)

                                       ATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGA                                                    >  SRR4302535.2901657/1‑94 (MQ=60)

                                       ATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGA                                                    <  SRR4302535.542795/94‑1 (MQ=60)

                                       ATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGA                                                    >  SRR4302535.4699372/1‑94 (MQ=60)

                                       ATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGA                                                    >  SRR4302535.869428/1‑94 (MQ=60)

                                        TTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAA                                                   >  SRR4302535.985044/1‑94 (MQ=60)

                                        TTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAA                                                   >  SRR4302535.4262247/1‑94 (MQ=60)

                                          ATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAG                                                 <  SRR4302535.580585/94‑1 (MQ=60)

                                           TTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGT                                                >  SRR4302535.969838/1‑94 (MQ=60)

                                            TCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTG                                               <  SRR4302535.2686628/94‑1 (MQ=60)

                                             CGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGA                                              >  SRR4302535.835569/1‑94 (MQ=60)

                                              GTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGAT                                             <  SRR4302535.440120/94‑1 (MQ=60)

                                              GTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGAT                                             >  SRR4302535.2971281/1‑94 (MQ=60)

                                              GTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGAT                                             <  SRR4302535.2819587/94‑1 (MQ=60)

                                              GTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGAT                                             >  SRR4302535.1453796/1‑94 (MQ=60)

                                               TAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATG                                            <  SRR4302535.2579301/94‑1 (MQ=60)

                                               TAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATG                                            <  SRR4302535.2522669/94‑1 (MQ=60)

                                                AGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGC                                           >  SRR4302535.4298683/1‑94 (MQ=60)

                                                AGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGC                                           >  SRR4302535.2496433/1‑94 (MQ=60)

                                                 GTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCA                                          <  SRR4302535.2707729/94‑1 (MQ=60)

                                                 GTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCA                                          >  SRR4302535.3460279/1‑94 (MQ=60)

                                                 GTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCA                                          <  SRR4302535.3900294/94‑1 (MQ=60)

                                                 GTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCA                                          <  SRR4302535.809753/94‑1 (MQ=60)

                                                 GTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCA                                          <  SRR4302535.3485558/94‑1 (MQ=60)

                                                  TGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAG                                         <  SRR4302535.1548870/94‑1 (MQ=60)

                                                   GCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGG                                        >  SRR4302535.2322162/1‑94 (MQ=60)

                                                     GGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCG                                      <  SRR4302535.4247226/94‑1 (MQ=60)

                                                     GGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCG                                      >  SRR4302535.4546137/1‑94 (MQ=60)

                                                       TCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCT                                    <  SRR4302535.1640890/94‑1 (MQ=60)

                                                       TCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCT                                    >  SRR4302535.1789682/1‑94 (MQ=60)

                                                       TCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCACGCGCT                                    >  SRR4302535.748615/1‑94 (MQ=60)

                                                          ATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGA                                 >  SRR4302535.3622353/1‑94 (MQ=60)

                                                          ATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGA                                 >  SRR4302535.3525255/1‑94 (MQ=60)

                                                          ATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGA                                 >  SRR4302535.3201875/1‑94 (MQ=60)

                                                          ATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGA                                 >  SRR4302535.993143/1‑94 (MQ=60)

                                                          ATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGACGCTGGA                                 >  SRR4302535.1266282/1‑94 (MQ=60)

                                                           TAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAG                                <  SRR4302535.4706103/94‑1 (MQ=60)

                                                              CGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGT                             >  SRR4302535.4239663/1‑94 (MQ=60)

                                                               GTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTT                            <  SRR4302535.4137139/94‑1 (MQ=60)

                                                                TGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTA                           <  SRR4302535.1431289/94‑1 (MQ=60)

                                                                 GCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGGGTTAC                          >  SRR4302535.2866110/1‑94 (MQ=60)

                                                                 GCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTAC                          >  SRR4302535.879681/1‑94 (MQ=60)

                                                                 GCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTAC                          >  SRR4302535.908199/1‑94 (MQ=60)

                                                                 GCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTAC                          >  SRR4302535.2751960/1‑94 (MQ=60)

                                                                  CCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACA                         >  SRR4302535.4140314/1‑94 (MQ=60)

                                                                   CCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAA                        <  SRR4302535.663542/94‑1 (MQ=60)

                                                                   CCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAA                        >  SRR4302535.1230384/1‑94 (MQ=60)

                                                                   CCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAA                        <  SRR4302535.279869/94‑1 (MQ=60)

                                                                    CTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAAT                       <  SRR4302535.2052212/94‑1 (MQ=60)

                                                                    CTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAAT                       >  SRR4302535.2886048/1‑94 (MQ=60)

                                                                    CTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAAT                       <  SRR4302535.3679360/94‑1 (MQ=60)

                                                                    CTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAAT                       >  SRR4302535.474/1‑94 (MQ=60)

                                                                     TATGCCGTGTGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATC                      <  SRR4302535.78939/94‑1 (MQ=60)

                                                                     TATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATC                      <  SRR4302535.2808457/94‑1 (MQ=60)

                                                                       TGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTT                    <  SRR4302535.1299169/94‑1 (MQ=60)

                                                                       TGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTT                    <  SRR4302535.2357779/94‑1 (MQ=60)

                                                                        GCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTT                   <  SRR4302535.1866456/94‑1 (MQ=60)

                                                                          CGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTAC                 <  SRR4302535.4283705/94‑1 (MQ=60)

                                                                          CGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTAC                 <  SRR4302535.1470841/94‑1 (MQ=60)

                                                                          CGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTAC                 >  SRR4302535.3923269/1‑94 (MQ=60)

                                                                            TGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTT               >  SRR4302535.4053812/1‑94 (MQ=60)

                                                                             GGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTC              <  SRR4302535.2556357/94‑1 (MQ=60)

                                                                              GGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCC             <  SRR4302535.372228/94‑1 (MQ=60)

                                                                               GGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCT            <  SRR4302535.2941311/94‑1 (MQ=60)

                                                                               GGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCT            >  SRR4302535.319181/1‑94 (MQ=60)

                                                                                GATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTC           <  SRR4302535.3106767/94‑1 (MQ=60)

                                                                                GATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTC           >  SRR4302535.150665/1‑94 (MQ=60)

                                                                                 ATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCG          <  SRR4302535.42843/94‑1 (MQ=60)

                                                                                   CAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGAC        >  SRR4302535.3872174/1‑94 (MQ=60)

                                                                                    AACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACA       >  SRR4302535.3224997/1‑94 (MQ=60)

                                                                                    AACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACA       <  SRR4302535.242876/94‑1 (MQ=60)

                                                                                    AACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACA       >  SRR4302535.176206/1‑94 (MQ=60)

                                                                                     ACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGTAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAG      <  SRR4302535.3063269/94‑1 (MQ=60)

                                                                                     ACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAG      <  SRR4302535.4418874/94‑1 (MQ=60)

                                                                                     ACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAG      <  SRR4302535.1898359/94‑1 (MQ=60)

                                                                                       AACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCG    <  SRR4302535.4403380/94‑1 (MQ=60)

                                                                                       AACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCG    <  SRR4302535.1963233/94‑1 (MQ=60)

                                                                                        ACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGT   <  SRR4302535.2264802/94‑1 (MQ=60)

                                                                                        ACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGT   >  SRR4302535.4036933/1‑94 (MQ=60)

                                                                                         CCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTA  <  SRR4302535.2905892/94‑1 (MQ=60)

ACGCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACATGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTA  >  NC_000913/3786004‑3786186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`