Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,862,488	G→A	A471A (GCC→GCT)	yidE ←	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,862,488	0	G	A	100.0%	897.1 / NA	246	A471A (GCC→GCT)	yidE	putative transport protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (120/126); total (120/126)

Only 100 of 252 total aligned reads displayed.

TGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAA  >  NC_000913/3862398‑3862577

tGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAgcgc                                                                                         >  2:1283890/1‑93 (MQ=255)

tGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGc                                                                                         >  1:531942/1‑93 (MQ=255)

 gCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCa                                                                                        >  2:1563904/1‑93 (MQ=255)

  ccAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCAc                                                                                       >  2:3201105/1‑93 (MQ=255)

    aGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCa                                                                                     >  1:4075080/1‑93 (MQ=255)

    aGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGAGATCAGAGCACCa                                                                                     >  2:588414/1‑93 (MQ=255)

       aTCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATaa                                                                                  >  1:2688601/1‑93 (MQ=255)

        tCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAAc                                                                                 <  1:2315862/93‑1 (MQ=255)

         cccGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAAcc                                                                                >  2:2175178/1‑93 (MQ=255)

          ccGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCa                                                                               <  2:4415598/93‑1 (MQ=255)

           cGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCaa                                                                              <  2:3107253/93‑1 (MQ=255)

           cGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCaa                                                                              >  1:703765/1‑93 (MQ=255)

            gCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAAt                                                                             >  1:3957376/1‑93 (MQ=255)

             cacaTGGTCAGGTCATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGGGATCAGAGCACCATAACCACTc                                                                            >  2:3641960/1‑93 (MQ=255)

             cacaTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATc                                                                            <  1:1035115/93‑1 (MQ=255)

              acaTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATcc                                                                           >  1:459770/1‑93 (MQ=255)

              acaTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATcc                                                                           >  2:1371215/1‑93 (MQ=255)

               caTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCa                                                                          <  1:2572611/93‑1 (MQ=255)

               caTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCa                                                                          <  1:2811884/93‑1 (MQ=255)

               caTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCa                                                                          >  2:4147294/1‑93 (MQ=255)

               caTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCa                                                                          <  2:683346/93‑1 (MQ=255)

                 tGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCATAGCACCATAACCAATCCAGc                                                                        <  2:2308366/93‑1 (MQ=255)

                  ggTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCt                                                                       <  1:3245068/93‑1 (MQ=255)

                   gTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCtt                                                                      <  2:1687002/93‑1 (MQ=255)

                    tCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTa                                                                     <  1:619533/93‑1 (MQ=255)

                      aGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGCACGGAGGTGATCAGAGCACCATAACAAATCCAGCTTCGc                                                                   >  1:491069/1‑93 (MQ=255)

                      aGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGc                                                                   <  2:490700/93‑1 (MQ=255)

                      aGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGc                                                                   >  1:1330319/1‑93 (MQ=255)

                       ggTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGcg                                                                  >  1:4105079/1‑92 (MQ=255)

                       ggTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGcc                                                                  >  2:1353305/1‑93 (MQ=255)

                        gTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGccc                                                                 <  1:3597074/93‑1 (MQ=255)

                        gTAATTCATTTTGGATAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGccc                                                                 <  2:2504432/93‑1 (MQ=255)

                         tAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCt                                                                <  2:1969718/93‑1 (MQ=255)

                         tAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCt                                                                >  2:1465285/1‑93 (MQ=255)

                         tAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCt                                                                >  2:3608137/1‑93 (MQ=255)

                          aaTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCtt                                                               >  1:4199347/1‑93 (MQ=255)

                          aaTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCtt                                                               <  2:1724815/93‑1 (MQ=255)

                          aaTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCtt                                                               <  2:783738/93‑1 (MQ=255)

                          aaTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCtt                                                               >  2:3723146/1‑93 (MQ=255)

                            ttCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCg                                                             >  2:1789091/1‑93 (MQ=255)

                            ttCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCg                                                             <  2:3226199/93‑1 (MQ=255)

                               aTTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCa                                                          <  1:1998348/93‑1 (MQ=255)

                                ttttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAt                                                         >  2:2069520/1‑93 (MQ=255)

                                ttttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAt                                                         <  2:3933240/93‑1 (MQ=255)

                                 tttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAtt                                                        <  1:2116574/93‑1 (MQ=255)

                                  ttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTg                                                       <  1:3034157/93‑1 (MQ=255)

                                   tGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGa                                                      <  1:1709699/93‑1 (MQ=255)

                                    ggCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAc                                                     <  1:4563308/93‑1 (MQ=255)

                                     gCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAcc                                                    <  1:112109/93‑1 (MQ=255)

                                     gCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAcc                                                    <  1:4088048/93‑1 (MQ=255)

                                      cTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCa                                                   >  2:2555055/1‑93 (MQ=255)

                                      cTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCa                                                   <  1:3491593/93‑1 (MQ=255)

                                       tAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAg                                                  >  1:82775/1‑93 (MQ=255)

                                       tAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAg                                                  <  2:3967996/93‑1 (MQ=255)

                                       tAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAg                                                  <  2:2469152/93‑1 (MQ=255)

                                       tAACATCCGCACCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAg                                                  <  2:523567/93‑1 (MQ=255)

                                        aaCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAgg                                                 <  1:947661/93‑1 (MQ=255)

                                        aaCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAgg                                                 <  2:3860357/93‑1 (MQ=255)

                                         aCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAggg                                                <  1:1422390/93‑1 (MQ=255)

                                         aCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAggg                                                <  2:3777351/93‑1 (MQ=255)

                                          cATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGt                                               <  1:2181953/93‑1 (MQ=255)

                                            tCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTAt                                             >  2:1584333/1‑93 (MQ=255)

                                             ccGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTAtt                                            <  1:753986/93‑1 (MQ=255)

                                              cgcgCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTc                                           <  2:1837608/93‑1 (MQ=255)

                                                  ccAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaa                                       >  2:2809903/1‑93 (MQ=255)

                                                   cAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTTACaaa                                      >  2:2658343/1‑93 (MQ=255)

                                                   cAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaa                                      >  1:249040/1‑93 (MQ=255)

                                                   cAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaa                                      >  1:1963064/1‑93 (MQ=255)

                                                    aGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaaa                                     <  1:3412686/93‑1 (MQ=255)

                                                    aGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaaa                                     >  1:1909182/1‑93 (MQ=255)

                                                    aGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaaa                                     >  2:2957249/1‑93 (MQ=255)

                                                     gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                    <  1:3359008/93‑1 (MQ=255)

                                                     gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                    <  1:2655286/93‑1 (MQ=255)

                                                     gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                    >  2:3407110/1‑93 (MQ=255)

                                                     gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                    >  2:2881210/1‑93 (MQ=255)

                                                      aaTGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATc                                   >  1:302598/1‑93 (MQ=255)

                                                       aTGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATcc                                  >  2:4082300/1‑93 (MQ=255)

                                                       aTGCCAACAGTAATCAGCGGAACGGCGGGGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATcc                                  >  2:4193706/1‑93 (MQ=255)

                                                          ccAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCcca                               >  1:3748784/1‑93 (MQ=255)

                                                          ccAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCcca                               >  2:4305472/1‑93 (MQ=255)

                                                            aaCAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccacc                             >  1:58137/1‑93 (MQ=255)

                                                              cAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAg                           >  2:1135918/1‑93 (MQ=255)

                                                              cAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAAACCATCCAGCTTAGCCCTTCGCAATTGACCAGGGGATTCACAAAATCACCACCAg                           >  2:1064745/1‑93 (MQ=255)

                                                               aGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGa                          <  2:4652569/93‑1 (MQ=255)

                                                                gTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGAt                         >  2:4544143/1‑93 (MQ=255)

                                                                    tCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCGTAGCCCTTCGCCATTGACCAGGGGATTCACAAAATCCCCACCAGATTTCa                     >  1:3298804/1‑93 (MQ=255)

                                                                      aGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGa                   >  2:2835738/1‑93 (MQ=255)

                                                                       gCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGAc                  <  2:2616075/93‑1 (MQ=255)

                                                                          gAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCaa               <  1:3860983/93‑1 (MQ=255)

                                                                           aaCGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAAc              <  2:888619/93‑1 (MQ=255)

                                                                           aaCGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAAc              <  1:1268131/93‑1 (MQ=255)

                                                                              ggcggTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGAc           >  1:3683324/1‑93 (MQ=255)

                                                                                   tGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCgaga      <  2:1989626/93‑1 (MQ=255)

                                                                                   tGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCgaga      <  2:1645624/93‑1 (MQ=255)

                                                                                    gATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGagag     <  2:2789286/93‑1 (MQ=255)

                                                                                     aTCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAgg    <  1:3534914/93‑1 (MQ=255)

                                                                                      tCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGa   <  1:3797760/93‑1 (MQ=255)

                                                                                      tCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGa   >  1:1385097/1‑93 (MQ=255)

                                                                                      tCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGa   <  2:3036883/93‑1 (MQ=255)

                                                                                       cAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGaa  <  1:4389029/93‑1 (MQ=255)

TGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAA  >  NC_000913/3862398‑3862577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAGC  >  NC_000913/3862396‑3862581

CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAG                                                                                              >  SRR4302535.2999442/1‑94 (MQ=60)

CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAG                                                                                              >  SRR4302535.247075/1‑94 (MQ=60)

 CTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGC                                                                                             >  SRR4302535.535664/1‑94 (MQ=60)

 CTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGC                                                                                             >  SRR4302535.3237055/1‑94 (MQ=60)

 CTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGC                                                                                             <  SRR4302535.3261000/94‑1 (MQ=60)

 CTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGC                                                                                             >  SRR4302535.609632/1‑94 (MQ=60)

    CCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACC                                                                                          >  SRR4302535.3404238/1‑94 (MQ=60)

     CAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCA                                                                                         >  SRR4302535.4102961/1‑94 (MQ=60)

     CAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCA                                                                                         <  SRR4302535.1938764/94‑1 (MQ=60)

     CAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCA                                                                                         <  SRR4302535.1692093/94‑1 (MQ=60)

       GCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATA                                                                                       <  SRR4302535.2939686/94‑1 (MQ=60)

       GCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGGGATCAGAGCACCATA                                                                                       >  SRR4302535.654047/1‑94 (MQ=60)

        CATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAA                                                                                      >  SRR4302535.715231/1‑94 (MQ=60)

        CATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAA                                                                                      >  SRR4302535.415085/1‑94 (MQ=60)

        CATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAA                                                                                      >  SRR4302535.2707813/1‑94 (MQ=60)

        CATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGCGATCAGAGCACCATAA                                                                                      >  SRR4302535.3279819/1‑94 (MQ=60)

          TCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACC                                                                                    <  SRR4302535.2332431/94‑1 (MQ=60)

            CCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAA                                                                                  >  SRR4302535.2221292/1‑94 (MQ=60)

            CCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAA                                                                                  >  SRR4302535.185444/1‑94 (MQ=60)

            CCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAA                                                                                  >  SRR4302535.708700/1‑94 (MQ=60)

             CGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAAT                                                                                 >  SRR4302535.88081/1‑94 (MQ=60)

             CGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAAT                                                                                 >  SRR4302535.3984394/1‑94 (MQ=60)

             CGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAAT                                                                                 <  SRR4302535.3856576/94‑1 (MQ=60)

             CGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAAT                                                                                 >  SRR4302535.195610/1‑94 (MQ=60)

              GCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATC                                                                                <  SRR4302535.4017589/94‑1 (MQ=60)

              GCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATC                                                                                <  SRR4302535.365402/94‑1 (MQ=60)

               CACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCC                                                                               >  SRR4302535.462983/1‑94 (MQ=60)

               CACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCC                                                                               <  SRR4302535.1042467/94‑1 (MQ=60)

                ACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCA                                                                              <  SRR4302535.3974075/94‑1 (MQ=60)

                 CATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAG                                                                             <  SRR4302535.1571667/94‑1 (MQ=60)

                 CATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAG                                                                             <  SRR4302535.2591102/94‑1 (MQ=60)

                 CATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAG                                                                             >  SRR4302535.4684697/1‑94 (MQ=60)

                 CATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAG                                                                             <  SRR4302535.2831869/94‑1 (MQ=60)

                    GGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTT                                                                          <  SRR4302535.3267605/94‑1 (MQ=60)

                     GTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTA                                                                         >  SRR4302535.1414663/1‑94 (MQ=60)

                      TCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAG                                                                        <  SRR4302535.623840/94‑1 (MQ=60)

                      TCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAG                                                                        <  SRR4302535.3030134/94‑1 (MQ=60)

                      TCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAG                                                                        >  SRR4302535.3441172/1‑94 (MQ=60)

                       CAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGCACGGAGGTGATCAGAGCACCATAACAAATCCAGCTTCGC                                                                       >  SRR4302535.494512/1‑94 (MQ=60)

                       CAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGC                                                                       <  SRR4302535.4105581/94‑1 (MQ=60)

                       CAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGC                                                                       >  SRR4302535.1339807/1‑94 (MQ=60)

                        AGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCG                                                                      >  SRR4302535.4133184/1‑94 (MQ=60)

                        AGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCC                                                                      >  SRR4302535.1990037/1‑94 (MQ=60)

                         GGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCC                                                                     <  SRR4302535.663328/94‑1 (MQ=60)

                          GTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCT                                                                    <  SRR4302535.3622035/94‑1 (MQ=60)

                          GTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCT                                                                    >  SRR4302535.2570275/1‑94 (MQ=60)

                           TAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTT                                                                   >  SRR4302535.2691823/1‑94 (MQ=60)

                           TAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTT                                                                   >  SRR4302535.4228084/1‑94 (MQ=60)

                            AATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTC                                                                  <  SRR4302535.4408958/94‑1 (MQ=60)

                             ATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCG                                                                 <  SRR4302535.3374364/94‑1 (MQ=60)

                                 ATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                             <  SRR4302535.2012741/94‑1 (MQ=60)

                                 ATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                             >  SRR4302535.473071/1‑94 (MQ=60)

                                   TTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTG                                                           <  SRR4302535.1138810/94‑1 (MQ=60)

                                   TTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTG                                                           >  SRR4302535.4210050/1‑94 (MQ=60)

                                   TTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTG                                                           <  SRR4302535.2519113/94‑1 (MQ=60)

                                   TTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTG                                                           <  SRR4302535.2131845/94‑1 (MQ=60)

                                    TTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGA                                                          <  SRR4302535.3055399/94‑1 (MQ=60)

                                     TGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAC                                                         <  SRR4302535.1722060/94‑1 (MQ=60)

                                      TGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACC                                                        <  SRR4302535.3596035/94‑1 (MQ=60)

                                      GGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACC                                                        <  SRR4302535.4594450/94‑1 (MQ=60)

                                       GCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCA                                                       <  SRR4302535.4116021/94‑1 (MQ=60)

                                       GCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCA                                                       <  SRR4302535.112897/94‑1 (MQ=60)

                                        CTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAG                                                      >  SRR4302535.83360/1‑94 (MQ=60)

                                        CTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAG                                                      <  SRR4302535.3515856/94‑1 (MQ=60)

                                        CTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAG                                                      <  SRR4302535.4118030/94‑1 (MQ=60)

                                         TAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGG                                                     <  SRR4302535.3073265/94‑1 (MQ=60)

                                         TAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGG                                                     >  SRR4302535.781067/1‑94 (MQ=60)

                                          AACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGG                                                    <  SRR4302535.954375/94‑1 (MQ=60)

                                          AACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGG                                                    <  SRR4302535.3778463/94‑1 (MQ=60)

                                          AACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGG                                                    <  SRR4302535.3622064/94‑1 (MQ=60)

                                           ACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGT                                                   <  SRR4302535.1432546/94‑1 (MQ=60)

                                           ACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGT                                                   <  SRR4302535.3505804/94‑1 (MQ=60)

                                            CATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTA                                                  <  SRR4302535.783787/94‑1 (MQ=60)

                                            CATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTA                                                  <  SRR4302535.2197515/94‑1 (MQ=60)

                                             ATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTAT                                                 <  SRR4302535.4515035/94‑1 (MQ=60)

                                              TCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATT                                                >  SRR4302535.1087834/1‑94 (MQ=60)

                                               CCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTC                                               <  SRR4302535.759295/94‑1 (MQ=60)

                                                CGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCA                                              <  SRR4302535.3551005/94‑1 (MQ=60)

                                                  CGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACA                                            <  SRR4302535.2750676/94‑1 (MQ=60)

                                                    CCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAA                                          >  SRR4302535.1977219/1‑94 (MQ=60)

                                                    CCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAA                                          <  SRR4302535.3970703/94‑1 (MQ=60)

                                                    CCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAA                                          >  SRR4302535.250755/1‑94 (MQ=60)

                                                     CAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAA                                         >  SRR4302535.3554024/1‑94 (MQ=60)

                                                     CAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAA                                         >  SRR4302535.1922945/1‑94 (MQ=60)

                                                      AGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAT                                        >  SRR4302535.1371560/1‑94 (MQ=60)

                                                      AGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAT                                        <  SRR4302535.3436432/94‑1 (MQ=60)

                                                       GAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATC                                       >  SRR4302535.304703/1‑94 (MQ=60)

                                                       GAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATC                                       <  SRR4302535.3382389/94‑1 (MQ=60)

                                                       GAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATC                                       <  SRR4302535.2674311/94‑1 (MQ=60)

                                                         ATGCCAACAGTAATCAGCGGACCGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCC                                     <  SRR4302535.2679348/94‑1 (MQ=60)

                                                           GCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCA                                   <  SRR4302535.4102994/94‑1 (MQ=60)

                                                           GCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCA                                   >  SRR4302535.3774723/1‑94 (MQ=60)

                                                            CCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCAC                                  >  SRR4302535.2190380/1‑94 (MQ=60)

                                                             CAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACC                                 >  SRR4302535.58564/1‑94 (MQ=60)

                                                                CAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGA                              >  SRR4302535.3742391/1‑94 (MQ=60)

                                                                CAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGA                              >  SRR4302535.496523/1‑94 (MQ=60)

                                                                  GTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATT                            >  SRR4302535.2090143/1‑94 (MQ=60)

                                                                   TAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTT                           <  SRR4302535.56516/94‑1 (MQ=60)

                                                                     ATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCGTAGCCCTTCGCCATTGACCAGGGGATTCACAAAATCCCCACCAGATTTCA                         >  SRR4302535.3321746/1‑94 (MQ=60)

                                                                      TCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAG                        <  SRR4302535.2086432/94‑1 (MQ=60)

                                                                       CAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGA                       <  SRR4302535.4611452/94‑1 (MQ=60)

                                                                        AGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGAC                      <  SRR4302535.242796/94‑1 (MQ=60)

                                                                           GGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAA                   >  SRR4302535.3792121/1‑94 (MQ=60)

                                                                            GAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAAC                  <  SRR4302535.3887550/94‑1 (MQ=60)

                                                                            GAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAAC                  <  SRR4302535.260465/94‑1 (MQ=60)

                                                                             AACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACG                 <  SRR4302535.1277202/94‑1 (MQ=60)

                                                                             AACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACG                 >  SRR4302535.3323101/1‑94 (MQ=60)

                                                                              ACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGA                >  SRR4302535.1346424/1‑94 (MQ=60)

                                                                               CGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGAC               >  SRR4302535.3708812/1‑94 (MQ=60)

                                                                               CGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGAC               <  SRR4302535.2324679/94‑1 (MQ=60)

                                                                                 GCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCG             <  SRR4302535.4500480/94‑1 (MQ=60)

                                                                                     TGATCAGAGCGCCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAG         <  SRR4302535.540461/94‑1 (MQ=60)

                                                                                      GATCAGAGCACCATATCCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATGCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGG        <  SRR4302535.1168712/94‑1 (MQ=60)

                                                                                      GATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGG        <  SRR4302535.3047245/94‑1 (MQ=60)

                                                                                       ATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGA       >  SRR4302535.1394983/1‑94 (MQ=60)

                                                                                       ATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGA       <  SRR4302535.1291638/94‑1 (MQ=60)

                                                                                       ATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGA       <  SRR4302535.3559452/94‑1 (MQ=60)

                                                                                        TCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAA      <  SRR4302535.3823940/94‑1 (MQ=60)

                                                                                         CAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAAC     >  SRR4302535.3408648/1‑94 (MQ=60)

                                                                                         CAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAAC     <  SRR4302535.4419059/94‑1 (MQ=60)

                                                                                           GAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAG   <  SRR4302535.4447708/94‑1 (MQ=60)

                                                                                            AGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAGC  >  SRR4302535.965482/1‑94 (MQ=60)

                                                                                            AGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAGC  >  SRR4302535.3409774/1‑94 (MQ=60)

CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAGC  >  NC_000913/3862396‑3862581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`