Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,876,595 |
G→C |
P385A (CCG→GCG) |
gyrB ← |
DNA gyrase subunit B |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,876,595 | 0 | G | C | 100.0%
| 470.5
/ NA
| 150 | P385A (CCG→GCG) | gyrB | DNA gyrase subunit B |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (15/135); total (15/135) |
Only 100 of 207 total aligned reads displayed.
GATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGT > NC_000913/3876505‑3876683
|
gATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGCCGTTTCACCCGCGcgccgcgccg > 1:2163182/1‑93 (MQ=255)
gcgTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTc < 2:1115327/93‑1 (MQ=255)
cgTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTca < 1:2611942/93‑1 (MQ=255)
gtgccTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcac < 2:3309189/90‑1 (MQ=255)
gTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcac < 1:4127998/93‑1 (MQ=255)
gTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcac < 1:2309154/93‑1 (MQ=255)
ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacg < 1:1398445/93‑1 (MQ=255)
ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTcacg > 1:3643815/1‑93 (MQ=255)
tCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgg < 1:3550515/93‑1 (MQ=255)
cTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggc < 2:3133168/93‑1 (MQ=255)
cTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTCAGCGCGCCGCCCGCCGCTCcaccggg > 2:3206306/1‑92 (MQ=255)
tGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggca < 1:911163/93‑1 (MQ=255)
tGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggca < 1:506346/93‑1 (MQ=255)
gCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcacg < 1:3001712/93‑1 (MQ=255)
cAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcacgg < 1:2800897/93‑1 (MQ=255)
gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCacgggcacgggc < 1:586658/93‑1 (MQ=255)
gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGGGCGGCGCCTctcgggcacgggg > 2:2079790/1‑92 (MQ=255)
gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCcccggcacgggc > 2:933036/1‑93 (MQ=255)
tCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCAcgggcacgggca < 1:160477/93‑1 (MQ=255)
tGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTTCGCGCGCGGGGCGCCGCCTCACACGCGCGGggagc > 2:3938613/1‑93 (MQ=255)
tGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCTCGCGCGCGACGCGCCGCTTCCCCGGGACGGgcagc > 1:491388/1‑93 (MQ=255)
gCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGgcagca < 1:1113690/93‑1 (MQ=255)
ccAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTGATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCAt > 2:1963017/1‑93 (MQ=255)
ccAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCAt < 2:4161994/93‑1 (MQ=255)
cAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCTCACCCGCGGCGCGCCGCTGCCCCGGCCCGGgcagcacc > 2:3039213/1‑91 (MQ=255)
cAGTTTGCCCGGCAGGCCCGCTAAGTCGAGAGCACCTTTACGGCGGGCCATTTCACGCGCGAGGAGCGGAGCATCACGGGGCCGGggagcgcc > 1:94348/1‑90 (MQ=255)
aGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTCACGCGCGCGGCGCGCCCCTTCCCGGGGCCCGGCAGGAtag > 1:3040666/1‑91 (MQ=255)
ttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCCCCGCTTCACGGGCACGGGCAGCATCGATa < 2:1537047/93‑1 (MQ=255)
tGCCCTGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGCCGCCTCACCGGCACGGGGAGCATCCATaa > 2:2956105/1‑93 (MQ=255)
tGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATaa < 1:2835675/93‑1 (MQ=255)
cccGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAtt < 1:246247/93‑1 (MQ=255)
ccGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAttt < 2:2907723/93‑1 (MQ=255)
ccGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAttt < 1:2537224/93‑1 (MQ=255)
cGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTTACGCGCGCGGCGCGCCGCTTCACGGGGACGGGGCGGAGCCATAAtttt > 1:1151661/1‑93 (MQ=255)
cGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAtttt < 1:4096009/93‑1 (MQ=255)
gaGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGcc < 1:2263412/92‑1 (MQ=255)
cAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGcc < 1:2487776/93‑1 (MQ=255)
aGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCCATTTACCCCCGGGAAGCACCACCTCACCGGCACCGGCAGCATCTGTAATTTTGACa > 2:3662467/1‑93 (MQ=255)
ggCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCaa < 2:4276665/93‑1 (MQ=255)
ggCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTTCGCGCGCGGCGCGCCGCTTCACCGGCACGGGGAGGATCGATAATTTTTCCaa > 2:1156895/1‑93 (MQ=255)
ggCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACCGGCACGGGCAGCATCGATAATTTTGCCaa > 1:1046788/1‑93 (MQ=255)
ccGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCa < 1:4294150/93‑1 (MQ=255)
ccGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTTCAACCa > 2:3771956/1‑93 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAc < 2:3004135/93‑1 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAc < 2:716436/93‑1 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAc > 2:461006/1‑93 (MQ=255)
cTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGa < 1:395021/93‑1 (MQ=255)
cTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGa < 2:201419/93‑1 (MQ=255)
cTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTGCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGa < 1:1506387/93‑1 (MQ=255)
tAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAt < 1:2048475/93‑1 (MQ=255)
aaGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAtt < 2:4104763/93‑1 (MQ=255)
aaGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAtt < 2:15251/93‑1 (MQ=255)
aaGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAtt < 1:2505103/93‑1 (MQ=255)
gTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAtttt < 2:2872899/93‑1 (MQ=255)
gTCGAGCGCACCTTTACGGCGGGGCATTTCCCGCGCGCGGCGCGCCGCTTCACCGGCACGGGCAGCCTCGATAATTTTGTCAACCACGAtttt > 2:2739915/1‑93 (MQ=255)
tCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTc < 1:2561047/93‑1 (MQ=255)
tCGAGCGCACCTTTACGGCGGGGCATTTTACCCGCGCCACGCGCCGCCTCACGGGCACGGGCAGCATCGATAATTTTTTCAACCACCAttttt > 2:849626/1‑92 (MQ=255)
cGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTcg < 1:3907059/93‑1 (MQ=255)
gAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTcgc < 1:238949/93‑1 (MQ=255)
aGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTcgcg < 2:2182323/93‑1 (MQ=255)
gaCCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCgg < 1:1826136/92‑1 (MQ=255)
cgccTTTGCGGCGTGTCCTTCCACGCGGGCGACGCTCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCgg < 2:3463304/91‑1 (MQ=255)
cACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCgg < 1:4488883/93‑1 (MQ=255)
cACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACGGGCACGGGCAGCATCGATAATTTTGGCAACCACGCTTTTCGCGTCgg > 2:1779778/1‑93 (MQ=255)
cccTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGt < 1:3229737/92‑1 (MQ=255)
aCCTTTACGGCGGGTCATTTCACCCGCGCGACGCGCCGCTTCACGGGCACGGGCCGCATCGATAATTTTGCCCACCACGATTTTCGCCTCGGt > 2:2389118/1‑93 (MQ=255)
tttACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTgg < 2:1242690/93‑1 (MQ=255)
ttACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTggg < 2:781756/93‑1 (MQ=255)
tACGGGGGGTTATCCCCCGCGCGGGCCGCGCCGCTGCACGGGCAGGGGCAGCATGGATAATTTTGCCACCCACGATTTGCGCGTCGGTTGGGt < 2:2535529/93‑1 (MQ=255)
aCGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtt < 2:3591931/93‑1 (MQ=255)
gcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGTCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTc < 1:1861000/93‑1 (MQ=255)
gcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTc < 2:1459827/93‑1 (MQ=255)
cggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc < 1:1077416/93‑1 (MQ=255)
cggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc < 1:3341321/93‑1 (MQ=255)
cggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc < 2:1621274/93‑1 (MQ=255)
gggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCca > 1:513560/1‑93 (MQ=255)
gggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCca < 2:3260883/93‑1 (MQ=255)
ggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcag > 2:2599043/1‑93 (MQ=255)
gTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGCTGGGGTTTCcagc > 1:3456592/1‑93 (MQ=255)
tCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagca < 1:3185065/93‑1 (MQ=255)
tCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagca < 2:899247/93‑1 (MQ=255)
cATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagcag < 1:3141174/93‑1 (MQ=255)
aTTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAgg < 1:135132/93‑1 (MQ=255)
tttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGCTGGGTTTTCCAGCAGGt > 1:2111917/1‑93 (MQ=255)
ttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTa < 1:4425667/93‑1 (MQ=255)
tCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt < 1:287817/93‑1 (MQ=255)
cACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAtt < 2:3539107/93‑1 (MQ=255)
ccgcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc < 2:4051830/92‑1 (MQ=255)
aCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc < 2:2458193/93‑1 (MQ=255)
aCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc < 2:1290623/93‑1 (MQ=255)
aCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc < 1:808586/93‑1 (MQ=255)
aCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc < 2:4468963/93‑1 (MQ=255)
gcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTg > 1:3806949/1‑93 (MQ=255)
cgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGc < 1:1279800/93‑1 (MQ=255)
gcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGcc < 1:528317/93‑1 (MQ=255)
gACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagca < 2:4354496/93‑1 (MQ=255)
gACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagca < 2:3387866/93‑1 (MQ=255)
aCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagcag > 2:1832414/1‑93 (MQ=255)
cgcgCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgt < 2:2288699/93‑1 (MQ=255)
cgcgCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgt < 1:3697370/93‑1 (MQ=255)
|
GATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGT > NC_000913/3876505‑3876683
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT > NC_000913/3876504‑3876688
|
GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGCCGTTTCACCCGCGCGCCGCGCCG > SRR4302535.2178701/1‑94 (MQ=60)
TCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCCCCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTT < SRR4302535.1091436/94‑1 (MQ=60)
TCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTT < SRR4302535.164759/94‑1 (MQ=60)
GCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGCCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCA < SRR4302535.2704779/94‑1 (MQ=60)
CGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCAC < SRR4302535.3082308/94‑1 (MQ=60)
CGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCAC < SRR4302535.2630678/94‑1 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACG < SRR4302535.4156246/94‑1 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACG < SRR4302535.2325684/94‑1 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGTCTTTCACGCGCGCGTCGCGGCCCTTCACC > SRR4302535.1244500/1‑94 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTCACGCGCGCGACGCGCCGCCTCACG > SRR4302535.4293987/1‑94 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGGCGCTTCACG > SRR4302535.4517000/1‑94 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACG > SRR4302535.3669049/1‑94 (MQ=60)
TTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGG < SRR4302535.1408429/94‑1 (MQ=60)
TTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGGGGCGCCTTACGG > SRR4302535.3196277/1‑94 (MQ=60)
TCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGG < SRR4302535.3575154/94‑1 (MQ=60)
CTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCA < SRR4302535.2560907/94‑1 (MQ=60)
CTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGGCGCTTCcccggga > SRR4302535.4079568/1‑87 (MQ=60)
TGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCAC < SRR4302535.509885/94‑1 (MQ=60)
TGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCAC < SRR4302535.917641/94‑1 (MQ=60)
GGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCCTCACGGGCACG > SRR4302535.4479028/1‑94 (MQ=60)
GCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGG < SRR4302535.3022753/94‑1 (MQ=60)
CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGG < SRR4302535.2820819/94‑1 (MQ=60)
AGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGC < SRR4302535.3276960/94‑1 (MQ=60)
AGTCTGCCAGTTTGCCCGGCAGCCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGC < SRR4302535.2485549/94‑1 (MQ=60)
GTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCA < SRR4302535.590768/94‑1 (MQ=60)
GTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACCGGCACGGGCG > SRR4302535.1337361/1‑94 (MQ=60)
TCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAG < SRR4302535.3201342/94‑1 (MQ=60)
TCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAG < SRR4302535.161604/94‑1 (MQ=60)
GCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAG < SRR4302535.394627/94‑1 (MQ=60)
CTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCTCGCGCGCGACGCGCCGCTTCCCCGGGACGGGCAGC > SRR4302535.494833/1‑94 (MQ=60)
TGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCA < SRR4302535.2888862/94‑1 (MQ=60)
GCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCAT < SRR4302535.2542712/94‑1 (MQ=60)
GCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCAT < SRR4302535.1121631/94‑1 (MQ=60)
AGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGGACGGGGCGCATCGA > SRR4302535.4135850/1‑94 (MQ=60)
TTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAA < SRR4302535.517468/94‑1 (MQ=60)
TTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGCTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAA < SRR4302535.3683721/94‑1 (MQ=60)
TGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAT < SRR4302535.2855799/94‑1 (MQ=60)
TGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACGGGCACGGGgcggaaccataat > SRR4302535.1750537/1‑81 (MQ=60)
CCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTT < SRR4302535.247935/94‑1 (MQ=60)
CCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTTACGCGCGCGGCGCGCCGCTTCACGGGGACGGGgcggagccataatttt > SRR4302535.1159885/1‑78 (MQ=60)
CCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTT < SRR4302535.2555502/94‑1 (MQ=60)
CGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTG < SRR4302535.4124045/94‑1 (MQ=60)
CGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCCTCACGGGCACGGGGAGCATCGATAATTTTG > SRR4302535.1460267/1‑94 (MQ=60)
CGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCAGTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTG < SRR4302535.2839647/94‑1 (MQ=60)
GGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAATTTTC > SRR4302535.2302925/1‑94 (MQ=60)
GGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCCTCCCGGGCACGGGCCGCATCGAatatttttc > SRR4302535.945550/1‑85 (MQ=60)
GCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCC < SRR4302535.1851021/94‑1 (MQ=60)
GAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCA < SRR4302535.2279539/94‑1 (MQ=60)
CAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCA < SRR4302535.2505717/94‑1 (MQ=60)
CAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCA < SRR4302535.477368/94‑1 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGCGCCGCTTCACGGGCACGGGgcggatcggtaattttttcca > SRR4302535.2470749/1‑73 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGAGGCGCCCCTTCACGGGGACGGGCAGCATCGATAATTTTTCCAA > SRR4302535.2334041/1‑94 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACCGGCACGGGCAGCATCGATAATTTTGCCAA > SRR4302535.1054208/1‑94 (MQ=60)
GGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAAC < SRR4302535.2399775/94‑1 (MQ=60)
GCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCTTTTTACGCCGGCGACGCGGCGCTTtcttggcacgggaagcaccgctaatttttcgaaac > SRR4302535.2046550/1‑59 (MQ=34)
CCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTTACGCGCGCGACGCGCCGCTTCACGGGCACGGGGCGCATCGATCATTTTGCCCAACAC > SRR4302535.1926109/1‑94 (MQ=60)
CCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAC < SRR4302535.4323531/94‑1 (MQ=60)
CCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTTCGCGCGCGACGCGCCGCTTCCCGGGCACGGGCAGCctcgggcatttttccacacca > SRR4302535.4113800/1‑73 (MQ=50)
CGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACG > SRR4302535.2983364/1‑94 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTAAGCGCGCGACGCGCCGCTTCACGGGCACGGGCGGCATCCGTAATTTTGACAACCACG > SRR4302535.4641625/1‑94 (MQ=60)
GCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA > SRR4302535.4297302/1‑94 (MQ=60)
CTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑T < SRR4302535.3042478/94‑1 (MQ=60)
CTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑T < SRR4302535.397784/94‑1 (MQ=60)
CTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTGCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑T < SRR4302535.1517217/94‑1 (MQ=60)
TAAGTCGAGCGCACCTTTACGGCGGGTCATTTTACCCGCGCGACGCGCCGCTTCACGGGCACGGGGAGCAGCGATAATTTTGCCAACCACGC‑TT > SRR4302535.4502672/1‑94 (MQ=60)
TAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TT < SRR4302535.2063224/94‑1 (MQ=60)
AAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTT < SRR4302535.2523162/94‑1 (MQ=60)
AAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTT < SRR4302535.2255377/94‑1 (MQ=60)
AGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGCCGCCTCACGGGCACGGGCAGCCTCGATAATTTTGCCAAACACGA‑TTTT > SRR4302535.921500/1‑94 (MQ=60)
GTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGGCCCGCCTTACGGGCACCGGCCGCATCGATAATTTTTTCAACCACGACTTTT > SRR4302535.3055082/1‑94 (MQ=23)
TCGAGCGCCCCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCG < SRR4302535.514517/94‑1 (MQ=60)
TCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCG < SRR4302535.2579485/94‑1 (MQ=60)
CGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGC < SRR4302535.3933827/94‑1 (MQ=60)
CGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACCGGCAGCATCGATAATTTTGGCAAACACGA‑ATTTTGC > SRR4302535.3031349/1‑94 (MQ=60)
GAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCG < SRR4302535.240591/94‑1 (MQ=60)
AGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGT < SRR4302535.1406951/94‑1 (MQ=60)
AGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGT < SRR4302535.826815/94‑1 (MQ=60)
AGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGGACAGGGAGGATCGATAATTTTGCCCACCACGA‑TTTTtgcgc > SRR4302535.234598/1‑89 (MQ=60)
CGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGGCAACCACGA‑TTTTCGCGTCG > SRR4302535.504320/1‑94 (MQ=60)
CGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCG < SRR4302535.3588543/94‑1 (MQ=60)
GACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGT < SRR4302535.1839318/94‑1 (MQ=60)
CACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGT < SRR4302535.4519699/94‑1 (MQ=60)
CACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGGACGGGCAGCATCGATAATTTTGCCAAACACGA‑TTTTttcggcggt > SRR4302535.4308559/1‑85 (MQ=60)
CCCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTT < SRR4302535.3252123/94‑1 (MQ=60)
CCTTTACGGCGGGTCATTTCAAGCGCGCGGCGCGCCGCTTCACGGGGCCGGGGAGCATCGAGAATTTTGTCAACCACGC‑TTTTCGCGTCGGGTG > SRR4302535.2278498/1‑94 (MQ=46)
CTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTCCAACCACGA‑TTTTCGCGTCCGGTGG > SRR4302535.3491490/1‑94 (MQ=60)
TTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGG < SRR4302535.1583259/94‑1 (MQ=60)
TTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGT < SRR4302535.3809214/94‑1 (MQ=60)
ACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTT < SRR4302535.3572180/94‑1 (MQ=60)
GCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGTCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCC < SRR4302535.1874420/94‑1 (MQ=60)
CGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCA < SRR4302535.1085081/94‑1 (MQ=60)
CGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCA < SRR4302535.3364600/94‑1 (MQ=60)
CGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCA > SRR4302535.517149/1‑94 (MQ=60)
CGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCA < SRR4302535.681955/94‑1 (MQ=60)
GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAG < SRR4302535.3223655/94‑1 (MQ=60)
GGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGCTGGGGTTTCCAGC > SRR4302535.3480619/1‑94 (MQ=60)
TCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAG < SRR4302535.3207084/94‑1 (MQ=60)
TCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAG < SRR4302535.112158/94‑1 (MQ=60)
CATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGG < SRR4302535.3163031/94‑1 (MQ=60)
ATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGT > SRR4302535.2430108/1‑94 (MQ=60)
ATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGT < SRR4302535.136076/94‑1 (MQ=60)
ATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGCTGGGTTTTCCAGCAGGT > SRR4302535.2127162/1‑94 (MQ=60)
TTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTA < SRR4302535.3457574/94‑1 (MQ=60)
TTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAT < SRR4302535.4455983/94‑1 (MQ=60)
TCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATT < SRR4302535.289833/94‑1 (MQ=60)
CACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTC < SRR4302535.3868923/94‑1 (MQ=60)
ACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT > SRR4302535.1081784/1‑94 (MQ=60)
ACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT < SRR4302535.814247/94‑1 (MQ=60)
ACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT < SRR4302535.2117664/94‑1 (MQ=60)
ACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT < SRR4302535.21669/94‑1 (MQ=60)
CGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG < SRR4302535.4406837/94‑1 (MQ=60)
CGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG > SRR4302535.3833198/1‑94 (MQ=60)
CGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG < SRR4302535.2511092/94‑1 (MQ=60)
CGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCC < SRR4302535.1288937/94‑1 (MQ=60)
GCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCA < SRR4302535.532008/94‑1 (MQ=60)
CGCGACGCGCCGCTTCACGGGCACGGGGAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAG > SRR4302535.2606144/1‑94 (MQ=60)
GACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAG > SRR4302535.4085611/1‑94 (MQ=60)
GCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGT < SRR4302535.2320584/94‑1 (MQ=60)
ACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGT < SRR4302535.1884743/94‑1 (MQ=60)
CGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT < SRR4302535.582262/94‑1 (MQ=60)
CGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT < SRR4302535.3722956/94‑1 (MQ=60)
GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTC > SRR4302535.1453131/1‑94 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302535.801330/94‑1 (MQ=60)
GCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGT > SRR4302535.1013506/1‑94 (MQ=60)
CCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT < SRR4302535.1653475/94‑1 (MQ=60)
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GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA‑TTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT > NC_000913/3876504‑3876688
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
