Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,931,664	A→G	E87E (GAA→GAG)	rbsA →	ATP‑binding component of D‑ribose high‑affinity transport system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,931,664	0	A	G	100.0%	738.6 / NA	231	E87E (GAA→GAG)	rbsA	ATP‑binding component of D‑ribose high‑affinity transport system
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (107/124); total (107/124)

Only 100 of 238 total aligned reads displayed.

TGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAACTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAAC  >  NC_000913/3931574‑3931753

tGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCt                                                                                         >  1:2666000/1‑93 (MQ=255)

   cGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAACCGGGATTGGGATTATCCATCAGGAGCTGaa                                                                                      >  2:172101/1‑93 (MQ=255)

      tACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCt                                                                                   <  1:2593326/93‑1 (MQ=255)

      tACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCt                                                                                   <  1:1129675/93‑1 (MQ=255)

      tACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATCGGGATTATCCATCAGGAGCTGAACCt                                                                                   >  1:414301/1‑93 (MQ=255)

       aCGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTg                                                                                  >  1:3896239/1‑93 (MQ=255)

        cGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGa                                                                                 >  1:3154756/1‑93 (MQ=255)

          gttttATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATc                                                                               <  1:1498940/92‑1 (MQ=255)

          cTTTTATGGCTGGGGAAAGAAACGACATTTCCCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATc                                                                               <  1:3046915/93‑1 (MQ=255)

          cTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATc                                                                               >  2:3889787/1‑93 (MQ=255)

           ttttATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATcc                                                                              >  1:2111344/1‑93 (MQ=255)

              tATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGc                                                                           <  1:849900/93‑1 (MQ=255)

               aTGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCa                                                                          <  1:890940/93‑1 (MQ=255)

                 tgCTGGGGAAAGAAACGACATTGACCGGGCCAAAATCTTCCCAGGAAGCCGAGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGt                                                                        <  1:1631453/92‑1 (MQ=255)

                 ggCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGt                                                                        <  2:3113908/93‑1 (MQ=255)

                 ggCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGt                                                                        >  2:4514120/1‑93 (MQ=255)

                 ggCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGt                                                                        >  2:2035558/1‑93 (MQ=255)

                  gCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGtt                                                                       <  2:1582047/93‑1 (MQ=255)

                     ggggAAAGAAACGACATTTCCAGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGAc                                                                    <  2:1168465/93‑1 (MQ=255)

                     ggggAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGAc                                                                    <  2:2180090/93‑1 (MQ=255)

                     ggggAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGAc                                                                    <  1:1680066/93‑1 (MQ=255)

                        gaaagaaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCAt                                                                 <  2:487494/93‑1 (MQ=255)

                        gaaagaaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCAt                                                                 >  1:3571860/1‑93 (MQ=255)

                        gaaagaaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCAt                                                                 <  1:1337116/93‑1 (MQ=255)

                         aaagaaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCAtt                                                                <  1:254861/93‑1 (MQ=255)

                         aaagaaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCAtt                                                                >  2:2404262/1‑93 (MQ=255)

                         aaagaaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCAtt                                                                <  2:2682982/93‑1 (MQ=255)

                           agaaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGc                                                              <  2:4079438/93‑1 (MQ=255)

                            gaaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGcc                                                             <  2:48249/93‑1 (MQ=255)

                            gaaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGcc                                                             >  2:2637312/1‑93 (MQ=255)

                             aaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCg                                                            >  1:54939/1‑93 (MQ=255)

                             aaaCGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCg                                                            >  1:4006780/1‑93 (MQ=255)

                              aaCGACATTTACCGGGCCAAAATCTTACCAGGAAGCCGGGATGGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGGTGACCATTGCCGa                                                           >  2:1492105/1‑93 (MQ=255)

                                 gACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGaaaa                                                        <  1:3299282/93‑1 (MQ=255)

                                 gACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGaaaa                                                        <  2:3737174/93‑1 (MQ=255)

                                 gACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGaaaa                                                        <  1:4411262/93‑1 (MQ=255)

                                 gACATTCACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCGGGAGCTGAACCTGATCGCGCAGTTGACCATTGCCGaaaa                                                        <  2:2022033/93‑1 (MQ=255)

                                  aacattACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAAc                                                       <  2:1148155/89‑1 (MQ=255)

                                  aCATTTACCGGGCCAAAATCTTCCGAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAAc                                                       <  2:3288530/93‑1 (MQ=255)

                                  aCATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGaaaaa                                                       >  1:1988465/1‑92 (MQ=255)

                                  aCATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAAc                                                       <  1:714365/93‑1 (MQ=255)

                                   cATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACa                                                      >  1:2858576/1‑93 (MQ=255)

                                   cATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACa                                                      >  2:591469/1‑93 (MQ=255)

                                    aTTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACAt                                                     >  1:3716030/1‑93 (MQ=255)

                                     tttATCGGGCCAAAATTTTCCCAGGAAGCCGGGATTTTGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACGATTGCCGAAAACAtt                                                    >  2:2776830/1‑93 (MQ=255)

                                     tttACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACAtt                                                    <  2:2203491/93‑1 (MQ=255)

                                      ttACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTTACCATTGCCGCAAACAttt                                                   <  2:4582245/93‑1 (MQ=255)

                                       tACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACAtttt                                                  <  1:4345133/93‑1 (MQ=255)

                                       tACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACAtttt                                                  <  1:581445/93‑1 (MQ=255)

                                       tACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACAtttt                                                  <  2:1212185/93‑1 (MQ=255)

                                        aCCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTc                                                 <  1:1323076/93‑1 (MQ=255)

                                        aCCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTCATCCCGCAGCTGACCATTGCCGAAAACATTTTc                                                 >  2:2066412/1‑93 (MQ=255)

                                         ccGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTcc                                                <  2:4370618/93‑1 (MQ=255)

                                           gagacAAAATCGCCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTc                                              <  2:802332/89‑1 (MQ=255)

                                              ccAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGt                                           <  1:502944/93‑1 (MQ=255)

                                               cAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTc                                          >  1:3687630/1‑93 (MQ=255)

                                               cAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTc                                          >  1:2297550/1‑93 (MQ=255)

                                                aaaaTCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCg                                         >  1:3933422/1‑93 (MQ=255)

                                                  aaTCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTg                                       >  1:2093305/1‑93 (MQ=255)

                                                  aaTCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTg                                       >  2:3397607/1‑93 (MQ=255)

                                                   aTCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGa                                      <  2:259289/93‑1 (MQ=255)

                                                    tCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAg                                     <  2:4034313/93‑1 (MQ=255)

                                                    tCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAg                                     >  2:3620576/1‑93 (MQ=255)

                                                     cTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGt                                    >  1:1109949/1‑93 (MQ=255)

                                                      ttCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGtt                                   <  2:3041907/93‑1 (MQ=255)

                                                        cccAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTg                                 <  2:348788/93‑1 (MQ=255)

                                                         ccAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGt                                >  1:660619/1‑93 (MQ=255)

                                                         ccAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGt                                >  1:280676/1‑93 (MQ=255)

                                                          cAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGtt                               <  1:1283053/93‑1 (MQ=255)

                                                          cAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGtt                               <  1:4573646/93‑1 (MQ=255)

                                                          cAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGtt                               >  2:2436358/1‑93 (MQ=255)

                                                            ggAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTaa                             >  1:444718/1‑93 (MQ=255)

                                                            ggAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTaa                             <  1:4387113/93‑1 (MQ=255)

                                                            ggAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTaa                             <  1:4225557/93‑1 (MQ=255)

                                                             gAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAAt                            <  2:4243435/93‑1 (MQ=255)

                                                              aatccGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATc                           >  1:3117211/4‑93 (MQ=255)

                                                              aaGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATc                           <  2:1699907/93‑1 (MQ=255)

                                                                gCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGc                         >  1:4479635/1‑93 (MQ=255)

                                                                 ccGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCt                        <  1:1713625/93‑1 (MQ=255)

                                                                  cGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCtt                       <  1:1953051/93‑1 (MQ=255)

                                                                   gggattgggattATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCttt                      <  1:1409173/93‑1 (MQ=255)

                                                                   gggattgggattATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCttt                      >  1:1034086/1‑93 (MQ=255)

                                                                    ggattgggattATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTg                     >  2:1895946/1‑93 (MQ=255)

                                                                     gattgggattATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTgg                    <  2:4166103/93‑1 (MQ=255)

                                                                      attgggattATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGc                   >  1:1156508/1‑93 (MQ=255)

                                                                       ttgggattATCAATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCa                  >  1:769635/1‑93 (MQ=255)

                                                                         gggattATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATTGCTTTGGCaaa                >  1:746004/1‑93 (MQ=255)

                                                                           gattATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAAt              >  2:3970651/1‑93 (MQ=255)

                                                                           gattATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAAt              >  2:1115226/1‑93 (MQ=255)

                                                                            attATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAAtt             <  2:1321924/93‑1 (MQ=255)

                                                                            attATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAAtt             <  1:1893073/93‑1 (MQ=255)

                                                                             ttATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTg            <  1:3428933/93‑1 (MQ=255)

                                                                             ttATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTg            >  2:2299882/1‑93 (MQ=255)

                                                                             ttATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTg            <  1:945422/93‑1 (MQ=255)

                                                                               aTCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGAc          <  2:253925/93‑1 (MQ=255)

                                                                               aTCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGAc          <  2:1759883/93‑1 (MQ=255)

                                                                                tCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACt         >  1:900315/1‑93 (MQ=255)

                                                                                      aGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGaaaa   >  1:1553702/1‑93 (MQ=255)

                                                                                       ggAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAAc  <  2:1397210/93‑1 (MQ=255)

                                                                                       ggAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAAc  >  2:693653/1‑93 (MQ=255)

TGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAACTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAAC  >  NC_000913/3931574‑3931753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGATGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAACTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAACCATG  >  NC_000913/3931571‑3931757

CGATGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAG                                                                                               >  SRR4302535.3958950/1‑94 (MQ=60)

 GATGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGC                                                                                              <  SRR4302535.3426537/94‑1 (MQ=60)

  ATGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCT                                                                                             >  SRR4302535.2685086/1‑94 (MQ=60)

  ATGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCT                                                                                             >  SRR4302535.2066107/1‑94 (MQ=60)

  ATGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCT                                                                                             <  SRR4302535.3805694/94‑1 (MQ=60)

  ATGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCT                                                                                             <  SRR4302535.1747941/94‑1 (MQ=60)

       GGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATTCATCAGGAGCTGAACC                                                                                        >  SRR4302535.1938163/1‑94 (MQ=60)

        GTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCT                                                                                       >  SRR4302535.3878834/1‑94 (MQ=60)

        GTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATCGGGATTATCCATCAGGAGCTGAACCT                                                                                       >  SRR4302535.417208/1‑94 (MQ=60)

         TACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTG                                                                                      <  SRR4302535.2611956/94‑1 (MQ=60)

         TACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTG                                                                                      <  SRR4302535.1137739/94‑1 (MQ=60)

         TACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTG                                                                                      >  SRR4302535.3922940/1‑94 (MQ=60)

          ACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGA                                                                                     >  SRR4302535.3176670/1‑94 (MQ=60)

           CGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGAT                                                                                    <  SRR4302535.1110394/94‑1 (MQ=60)

           CGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGAT                                                                                    <  SRR4302535.1896719/94‑1 (MQ=60)

           CGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGAT                                                                                    >  SRR4302535.1163312/1‑94 (MQ=60)

             GTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCC                                                                                  <  SRR4302535.1509723/94‑1 (MQ=60)

             CTTTTATGGCTGGGGAAAGAAACGACATTTCCCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCC                                                                                  <  SRR4302535.3068260/94‑1 (MQ=60)

             CTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCC                                                                                  >  SRR4302535.3214522/1‑94 (MQ=60)

             CTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCC                                                                                  >  SRR4302535.2126572/1‑94 (MQ=60)

                TTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGC                                                                               <  SRR4302535.1533143/94‑1 (MQ=60)

                 TATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCA                                                                              <  SRR4302535.855886/94‑1 (MQ=60)

                  ATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAG                                                                             <  SRR4302535.2273695/94‑1 (MQ=60)

                  ATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAG                                                                             >  SRR4302535.726477/1‑94 (MQ=60)

                  ATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAG                                                                             <  SRR4302535.897253/94‑1 (MQ=60)

                    TGCTGGGGAAAGAAACGACATTGACCGGGCCAAAATCTTCCCAGGAAGCCGAGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTT                                                                           <  SRR4302535.1643239/94‑1 (MQ=60)

                      CTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGA                                                                         >  SRR4302535.172272/1‑94 (MQ=60)

                        GGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACC                                                                       <  SRR4302535.1692231/94‑1 (MQ=60)

                        GGGGAAAGAAACGACATGTACCGGGCAAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAGCCTGATCCCGCAGTTGACC                                                                       <  SRR4302535.1304174/94‑1 (MQ=60)

                          GGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCAT                                                                     <  SRR4302535.1345948/94‑1 (MQ=60)

                          GGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCAT                                                                     >  SRR4302535.4432019/1‑94 (MQ=60)

                          GGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCAT                                                                     >  SRR4302535.3596628/1‑94 (MQ=60)

                          GGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCAT                                                                     >  SRR4302535.734255/1‑94 (MQ=60)

                           GAAAGAAACTACATTTCCCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATT                                                                    <  SRR4302535.1346653/94‑1 (MQ=60)

                           GAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATT                                                                    <  SRR4302535.1346654/94‑1 (MQ=60)

                           GAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATT                                                                    >  SRR4302535.4406048/1‑94 (MQ=60)

                            AAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTG                                                                   <  SRR4302535.256621/94‑1 (MQ=60)

                             AAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGC                                                                  >  SRR4302535.899073/1‑94 (MQ=60)

                              AGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCC                                                                 <  SRR4302535.120488/94‑1 (MQ=60)

                               GAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCG                                                                >  SRR4302535.55343/1‑94 (MQ=60)

                               GAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCG                                                                >  SRR4302535.4034194/1‑94 (MQ=60)

                                AAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGA                                                               <  SRR4302535.591558/94‑1 (MQ=60)

                                 AACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAA                                                              <  SRR4302535.194619/94‑1 (MQ=60)

                                 AACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAA                                                              >  SRR4302535.1661151/1‑94 (MQ=60)

                                 AACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAA                                                              >  SRR4302535.542068/1‑94 (MQ=60)

                                  ACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAA                                                             >  SRR4302535.4449222/1‑94 (MQ=60)

                                   CGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAA                                                            >  SRR4302535.4614810/1‑94 (MQ=60)

                                   CGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAA                                                            <  SRR4302535.917130/94‑1 (MQ=60)

                                   CGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAA                                                            <  SRR4302535.2571686/94‑1 (MQ=60)

                                    GACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAAC                                                           <  SRR4302535.4441452/94‑1 (MQ=60)

                                    GACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAAC                                                           <  SRR4302535.3322228/94‑1 (MQ=60)

                                    GACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAAC                                                           <  SRR4302535.1429568/94‑1 (MQ=60)

                                    GACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAAA                                                           >  SRR4302535.2002784/1‑94 (MQ=60)

                                     ACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACA                                                          <  SRR4302535.15030/94‑1 (MQ=60)

                                     ACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACA                                                          >  SRR4302535.2878828/1‑94 (MQ=60)

                                     ACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACA                                                          <  SRR4302535.719381/94‑1 (MQ=60)

                                      CATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACAT                                                         >  SRR4302535.3741773/1‑94 (MQ=60)

                                         TTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTT                                                      <  SRR4302535.2821425/94‑1 (MQ=60)

                                          TACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTC                                                     <  SRR4302535.585528/94‑1 (MQ=60)

                                          TACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTC                                                     <  SRR4302535.4374861/94‑1 (MQ=60)

                                          TACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTC                                                     >  SRR4302535.3741620/1‑94 (MQ=60)

                                           ACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCC                                                    <  SRR4302535.927085/94‑1 (MQ=60)

                                           ACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCC                                                    <  SRR4302535.1332518/94‑1 (MQ=60)

                                           ACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGAAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCC                                                    <  SRR4302535.4287126/94‑1 (MQ=60)

                                            CCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCT                                                   <  SRR4302535.3593035/94‑1 (MQ=60)

                                                 CCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTC                                              <  SRR4302535.506461/94‑1 (MQ=60)

                                                 CCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTC                                              >  SRR4302535.3713144/1‑94 (MQ=60)

                                                 CCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTC                                              >  SRR4302535.2313991/1‑94 (MQ=60)

                                                 CCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTC                                              <  SRR4302535.868111/94‑1 (MQ=60)

                                                  CAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCG                                             <  SRR4302535.4445658/94‑1 (MQ=60)

                                                  CAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCG                                             >  SRR4302535.3960267/1‑94 (MQ=60)

                                                    AAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTG                                           >  SRR4302535.1142124/1‑94 (MQ=60)

                                                    AAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTG                                           >  SRR4302535.2108393/1‑94 (MQ=60)

                                                      ATCTTCCCAGGAAGCCGTGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAG                                         <  SRR4302535.3013243/94‑1 (MQ=60)

                                                       TCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGT                                        >  SRR4302535.1117877/1‑94 (MQ=60)

                                                       TCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGT                                        <  SRR4302535.4205750/94‑1 (MQ=60)

                                                         TTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTT                                      <  SRR4302535.3944865/94‑1 (MQ=60)

                                                         CTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTT                                      <  SRR4302535.2693053/94‑1 (MQ=60)

                                                           CCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGT                                    <  SRR4302535.855612/94‑1 (MQ=60)

                                                           CCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGT                                    >  SRR4302535.282633/1‑94 (MQ=60)

                                                           CCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGT                                    >  SRR4302535.665229/1‑94 (MQ=60)

                                                           CCCAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGT                                    >  SRR4302535.3975550/1‑94 (MQ=60)

                                                             CAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTA                                  <  SRR4302535.4604822/94‑1 (MQ=60)

                                                             CAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTA                                  >  SRR4302535.2125953/1‑94 (MQ=60)

                                                             CAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTA                                  <  SRR4302535.3668839/94‑1 (MQ=60)

                                                             CAGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTA                                  <  SRR4302535.1292202/94‑1 (MQ=60)

                                                              AGGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAA                                 >  SRR4302535.447830/1‑94 (MQ=60)

                                                               GGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAAT                                <  SRR4302535.3825440/94‑1 (MQ=60)

                                                               GGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAAT                                <  SRR4302535.4417123/94‑1 (MQ=60)

                                                               GGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAAT                                <  SRR4302535.4254471/94‑1 (MQ=60)

                                                               GGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAAT                                <  SRR4302535.3427421/94‑1 (MQ=60)

                                                               GGAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAAT                                <  SRR4302535.2010617/94‑1 (MQ=60)

                                                                GAATCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATC                               >  SRR4302535.3138911/1‑94 (MQ=60)

                                                                GAAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATC                               <  SRR4302535.3164247/94‑1 (MQ=60)

                                                                 AAGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCG                              <  SRR4302535.3137400/94‑1 (MQ=60)

                                                                  AGCCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGC                             >  SRR4302535.4510387/1‑94 (MQ=60)

                                                                    CCGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTT                           <  SRR4302535.1726015/94‑1 (MQ=60)

                                                                     CGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTT                          <  SRR4302535.1967108/94‑1 (MQ=60)

                                                                     CGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTT                          <  SRR4302535.1643406/94‑1 (MQ=60)

                                                                     CGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTT                          <  SRR4302535.1571516/94‑1 (MQ=60)

                                                                     CGGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTT                          >  SRR4302535.1041431/1‑94 (MQ=60)

                                                                      GGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTG                         <  SRR4302535.1419237/94‑1 (MQ=60)

                                                                      GGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTG                         >  SRR4302535.4497415/1‑94 (MQ=60)

                                                                      GGGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTG                         <  SRR4302535.1992473/94‑1 (MQ=60)

                                                                       GGATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGG                        <  SRR4302535.753686/94‑1 (MQ=60)

                                                                        GATTGGGATTATCCATCAGGAGCTGAGCCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGC                       <  SRR4302535.5598/94‑1 (MQ=60)

                                                                        GATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGC                       >  SRR4302535.1164769/1‑94 (MQ=60)

                                                                         ATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCA                      >  SRR4302535.135975/1‑94 (MQ=60)

                                                                         ATTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCA                      >  SRR4302535.4128988/1‑94 (MQ=60)

                                                                         ATTGGGATTATCAATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCA                      >  SRR4302535.775051/1‑94 (MQ=60)

                                                                          TTGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAA                     <  SRR4302535.2938436/94‑1 (MQ=60)

                                                                           TGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATTGCTTTGGCAAA                    >  SRR4302535.751247/1‑94 (MQ=60)

                                                                           TGGGATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACAATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAA                    <  SRR4302535.4713590/94‑1 (MQ=60)

                                                                              GATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATT                 >  SRR4302535.2470144/1‑94 (MQ=60)

                                                                               ATTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTG                <  SRR4302535.1906704/94‑1 (MQ=60)

                                                                                TTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGA               <  SRR4302535.952116/94‑1 (MQ=60)

                                                                                TTATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGA               <  SRR4302535.3452767/94‑1 (MQ=60)

                                                                                 TATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGCCGTGAGGTTGTTAATCGCTTTGGCACAATTGAC              >  SRR4302535.711424/1‑94 (MQ=60)

                                                                                  ATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACT             >  SRR4302535.906689/1‑94 (MQ=60)

                                                                                  ATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACT             <  SRR4302535.2843794/94‑1 (MQ=60)

                                                                                  ATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACT             <  SRR4302535.3281134/94‑1 (MQ=60)

                                                                                  ATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACT             >  SRR4302535.3588579/1‑94 (MQ=60)

                                                                                  ATCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACT             >  SRR4302535.571429/1‑94 (MQ=60)

                                                                                   TCCATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTG            <  SRR4302535.4086723/94‑1 (MQ=60)

                                                                                     CATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGA          >  SRR4302535.266027/1‑94 (MQ=60)

                                                                                      ATCAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAA         >  SRR4302535.795739/1‑94 (MQ=60)

                                                                                        CAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAA       >  SRR4302535.1564898/1‑94 (MQ=60)

                                                                                        CAGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAA       >  SRR4302535.1121341/1‑94 (MQ=60)

                                                                                         AGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAAC      >  SRR4302535.4560913/1‑94 (MQ=60)

                                                                                         AGGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAAC      >  SRR4302535.2448265/1‑94 (MQ=60)

                                                                                          GGAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAACC     <  SRR4302535.4364022/94‑1 (MQ=60)

                                                                                           GAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAACCA    <  SRR4302535.3570481/94‑1 (MQ=60)

                                                                                           GAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAACCA    <  SRR4302535.236820/94‑1 (MQ=60)

                                                                                           GAGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAACCA    <  SRR4302535.4556663/94‑1 (MQ=60)

                                                                                            AGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAACCAT   <  SRR4302535.3364494/94‑1 (MQ=60)

                                                                                            AGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAACCAT   >  SRR4302535.3136784/1‑94 (MQ=60)

                                                                                            AGCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAACCAT   <  SRR4302535.1375118/94‑1 (MQ=60)

                                                                                             GCTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAACCATG  <  SRR4302535.3273486/94‑1 (MQ=60)

CGATGCCGGTACGCTTTTATGGCTGGGGAAAGAAACGACATTTACCGGGCCAAAATCTTCCCAGGAAGCCGGGATTGGGATTATCCATCAGGAACTGAACCTGATCCCGCAGTTGACCATTGCCGAAAACATTTTCCTCGGTCGTGAGTTTGTTAATCGCTTTGGCAAAATTGACTGGAAAACCATG  >  NC_000913/3931571‑3931757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`