Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,938,374	C→T	D145N (GAC→AAC)	yiePs ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,938,374	0	C	T	100.0%	988.4 / NA	269	D145N (GAC→AAC)	yiePs	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (121/148); total (121/148)

Only 100 of 271 total aligned reads displayed.

GCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGA  >  NC_000913/3938284‑3938463

gcgcCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGc                                                                                         <  2:3510506/93‑1 (MQ=255)

gcgcCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGc                                                                                         <  2:377796/93‑1 (MQ=255)

acgcCTGAGAAGCTTTAAATGCCGCGTCCCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGc                                                                                         <  2:1101808/92‑1 (MQ=255)

 cgcCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCCCTGTGTTGcg                                                                                        >  1:2987233/1‑92 (MQ=255)

  gcCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTg                                                                                       >  1:3558081/1‑93 (MQ=255)

  gcCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTg                                                                                       >  2:3188407/1‑93 (MQ=255)

   ccTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTgg                                                                                      <  2:3996192/93‑1 (MQ=255)

     tGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCCCTGTGTTGCTGGTa                                                                                    >  2:2895688/1‑93 (MQ=255)

        cAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAAtt                                                                                 <  1:2120767/93‑1 (MQ=255)

        cAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGAACCAGCTTTATCACTGTGTTGCTGGTAAtt                                                                                 <  1:4569206/93‑1 (MQ=255)

          aGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGa                                                                               <  2:441154/93‑1 (MQ=255)

           gCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGAc                                                                              <  2:1015164/93‑1 (MQ=255)

           gCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGAc                                                                              <  1:3835863/93‑1 (MQ=255)

           gCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGAc                                                                              <  2:786473/93‑1 (MQ=255)

           gCTTTAAATGCCGCGTCGCCATCGCTTCGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGAc                                                                              <  1:3661096/93‑1 (MQ=255)

            cTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACg                                                                             >  1:238707/1‑93 (MQ=255)

             tttAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCGCTGTGTTGCTGGTAATTGACGt                                                                            >  2:2432696/1‑93 (MQ=255)

                aacagCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaa                                                                         <  2:4648574/89‑1 (MQ=255)

                  aTGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaagt                                                                       <  2:1335507/93‑1 (MQ=255)

                  aTGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaagt                                                                       <  2:2723956/93‑1 (MQ=255)

                   tGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaagta                                                                      >  1:2617629/1‑93 (MQ=255)

                    gCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaagtaa                                                                     <  2:302673/93‑1 (MQ=255)

                     ccGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaagtaag                                                                    <  2:2283125/93‑1 (MQ=255)

                      cgcgTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaagtaagt                                                                   >  2:4370367/1‑93 (MQ=255)

                      agcgTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaagtaagt                                                                   <  1:1852819/92‑1 (MQ=255)

                       gcgTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGaagaaaggg                                                                  >  2:392575/1‑91 (MQ=255)

                       gcgTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAgtg                                                                  <  2:2569955/93‑1 (MQ=255)

                       gcgTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAgtg                                                                  >  1:3503310/1‑93 (MQ=255)

                        cgTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAgtgt                                                                 <  2:619321/93‑1 (MQ=255)

                         gTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGtgtg                                                                >  2:927981/1‑93 (MQ=255)

                          tCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGa                                                               <  1:782934/93‑1 (MQ=255)

                             ccATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATaa                                                            >  2:859112/1‑93 (MQ=255)

                             ccATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATaa                                                            >  1:3784724/1‑93 (MQ=255)

                             ccATCGCTTTGGATAATCGCATCGACAATCGCATGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATaa                                                            <  2:2911125/93‑1 (MQ=255)

                              cATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATaaa                                                           <  1:309560/93‑1 (MQ=255)

                               aTCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAAc                                                          <  2:743545/93‑1 (MQ=255)

                                tCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAAcc                                                         >  2:2064900/1‑93 (MQ=255)

                                tCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAAcc                                                         >  1:2012230/1‑93 (MQ=255)

                                   cTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGaa                                                      >  2:548267/1‑93 (MQ=255)

                                   cTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGaa                                                      <  1:1028257/93‑1 (MQ=255)

                                    tttGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAt                                                     <  2:1694689/93‑1 (MQ=255)

                                    tttGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAt                                                     >  2:1294207/1‑93 (MQ=255)

                                    tttGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAt                                                     >  1:3254733/1‑93 (MQ=255)

                                    tttGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAt                                                     <  1:1292707/93‑1 (MQ=255)

                                    tttGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAt                                                     <  1:4142612/93‑1 (MQ=255)

                                     ttGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATg                                                    <  1:4623746/93‑1 (MQ=255)

                                       ggATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGa                                                  >  2:1201527/1‑93 (MQ=255)

                                          tAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATa                                               <  2:722496/93‑1 (MQ=255)

                                           aaTCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAg                                              <  2:4129938/93‑1 (MQ=255)

                                           aaTCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAg                                              <  1:1618994/93‑1 (MQ=255)

                                           aaTCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAg                                              <  1:2708409/93‑1 (MQ=255)

                                           aaTCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAg                                              <  1:4079796/93‑1 (MQ=255)

                                            aTCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGc                                             <  2:4306873/93‑1 (MQ=255)

                                            aTCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGc                                             <  2:4169131/93‑1 (MQ=255)

                                               gCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAg                                          >  2:1427028/1‑93 (MQ=255)

                                                cATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAgg                                         >  1:3983954/1‑93 (MQ=255)

                                                 aTCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGc                                        >  1:2435958/1‑93 (MQ=255)

                                                 aTCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGc                                        <  1:1211262/93‑1 (MQ=255)

                                                 aTCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGc                                        <  2:2637126/93‑1 (MQ=255)

                                                  tCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCg                                       >  1:1762828/1‑93 (MQ=255)

                                                  tCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCg                                       >  2:499504/1‑93 (MQ=255)

                                                   cGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGa                                      >  2:3463747/1‑93 (MQ=255)

                                                      cAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATg                                   >  2:3599501/1‑93 (MQ=255)

                                                       aaTCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGa                                  >  2:2087136/1‑93 (MQ=255)

                                                       aaTCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGa                                  <  1:1546386/93‑1 (MQ=255)

                                                       aaTCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGa                                  >  1:2471436/1‑93 (MQ=255)

                                                         tCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAgg                                <  1:895546/93‑1 (MQ=255)

                                                         tCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAgg                                <  2:1476193/93‑1 (MQ=255)

                                                           gCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTc                              <  1:1242572/93‑1 (MQ=255)

                                                            ccTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCa                             <  1:1658707/93‑1 (MQ=255)

                                                             cTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCaa                            >  1:2737593/1‑93 (MQ=255)

                                                              tGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCaaa                           >  2:1351837/1‑93 (MQ=255)

                                                                 tGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAAc                        >  1:2235126/1‑93 (MQ=255)

                                                                 tGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAAc                        <  2:3193598/93‑1 (MQ=255)

                                                                 tGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAAc                        >  1:1064188/1‑93 (MQ=255)

                                                                  gCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACg                       >  2:3727889/1‑93 (MQ=255)

                                                                   cAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACgg                      >  1:1966299/1‑93 (MQ=255)

                                                                    aGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGa                     >  2:4255032/1‑93 (MQ=255)

                                                                     gATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGAt                    <  1:1408773/93‑1 (MQ=255)

                                                                     gATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGAt                    >  2:1820003/1‑93 (MQ=255)

                                                                      atacAGTTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGAtt                   <  2:2339631/90‑1 (MQ=255)

                                                                      aTCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGAtt                   <  2:3131315/93‑1 (MQ=255)

                                                                      aTCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGAtt                   >  1:577448/1‑93 (MQ=255)

                                                                      aTCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGAtt                   <  2:332687/93‑1 (MQ=255)

                                                                      aTCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGAtt                   >  2:2854047/1‑93 (MQ=255)

                                                                       tCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTg                  >  1:499956/1‑93 (MQ=255)

                                                                        ccAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTgg                 >  1:1930555/1‑93 (MQ=255)

                                                                         cAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGgc                >  2:3666610/1‑93 (MQ=255)

                                                                          aGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGgcg               >  2:2504531/1‑93 (MQ=255)

                                                                           gCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGgcgc              >  1:422932/1‑93 (MQ=255)

                                                                             tttATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTc            <  2:1943655/93‑1 (MQ=255)

                                                                               tATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAt          <  1:4275405/93‑1 (MQ=255)

                                                                               tATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATAGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAt          <  1:2516062/93‑1 (MQ=255)

                                                                                aTCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCAtt         <  1:144175/93‑1 (MQ=255)

                                                                                aTCACTGTGTTGCTGGTAATTGACGTGAAGCAAGTGTGATAAACCGAATGGAATAGCGAGGCGCATGAGGTCAAAAACGGATTGGCGCTCAtt         >  1:2900076/1‑93 (MQ=255)

                                                                                   aCTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCa      >  2:3829784/1‑93 (MQ=255)

                                                                                    cTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCAt     <  1:1316548/93‑1 (MQ=255)

                                                                                      gtgtTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAg   >  1:2262536/1‑93 (MQ=255)

                                                                                       tgtTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGa  <  2:654162/93‑1 (MQ=255)

                                                                                       tgtTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGa  <  1:4435553/93‑1 (MQ=255)

GCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGA  >  NC_000913/3938284‑3938463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATATG  >  NC_000913/3938281‑3938467

GCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTT                                                                                               >  SRR4302535.1825934/1‑94 (MQ=60)

   GCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCT                                                                                            <  SRR4302535.1475521/94‑1 (MQ=60)

   GCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCT                                                                                            <  SRR4302535.4132557/94‑1 (MQ=60)

    CGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTG                                                                                           >  SRR4302535.3582757/1‑94 (MQ=60)

      CCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGT                                                                                         <  SRR4302535.1942231/94‑1 (MQ=60)

      CCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGT                                                                                         <  SRR4302535.1905899/94‑1 (MQ=60)

       CTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTA                                                                                        >  SRR4302535.1388989/1‑94 (MQ=60)

        TGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAA                                                                                       >  SRR4302535.2285105/1‑94 (MQ=60)

          ACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATT                                                                                     >  SRR4302535.1221076/1‑94 (MQ=60)

          ACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATT                                                                                     >  SRR4302535.1324136/1‑94 (MQ=60)

           CAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTG                                                                                    <  SRR4302535.2136062/94‑1 (MQ=60)

           CAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTG                                                                                    <  SRR4302535.3505002/94‑1 (MQ=60)

           CAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGAACCAGCTTTATCACTGTGTTGCTGGTAATTG                                                                                    <  SRR4302535.4600366/94‑1 (MQ=60)

            AAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGA                                                                                   <  SRR4302535.535856/94‑1 (MQ=60)

             AGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGAC                                                                                  <  SRR4302535.536045/94‑1 (MQ=60)

             AGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGAC                                                                                  <  SRR4302535.2518051/94‑1 (MQ=60)

              GCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACG                                                                                 <  SRR4302535.3862313/94‑1 (MQ=60)

              GCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACG                                                                                 >  SRR4302535.240346/1‑94 (MQ=60)

              GCTTTAAATGCCGCGTCGCCATCGCTTCGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACG                                                                                 <  SRR4302535.3686440/94‑1 (MQ=60)

                TTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTG                                                                               <  SRR4302535.1974235/94‑1 (MQ=60)

                TTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTG                                                                               >  SRR4302535.355111/1‑94 (MQ=60)

                  TAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAA                                                                             <  SRR4302535.3822790/94‑1 (MQ=60)

                   AAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAG                                                                            >  SRR4302535.2057557/1‑94 (MQ=60)

                   AAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAG                                                                            <  SRR4302535.2404654/94‑1 (MQ=60)

                     ATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTA                                                                          <  SRR4302535.2745958/94‑1 (MQ=60)

                     ATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTA                                                                          >  SRR4302535.2636396/1‑94 (MQ=60)

                       GCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAG                                                                        <  SRR4302535.1983185/94‑1 (MQ=60)

                       GCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAG                                                                        >  SRR4302535.2695238/1‑94 (MQ=60)

                        CCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGT                                                                       <  SRR4302535.1715655/94‑1 (MQ=60)

                        CCGCGGCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGT                                                                       <  SRR4302535.3235104/94‑1 (MQ=60)

                         CGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTG                                                                      >  SRR4302535.3527659/1‑94 (MQ=60)

                         CGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTG                                                                      <  SRR4302535.486551/94‑1 (MQ=60)

                         AGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTG                                                                      <  SRR4302535.1866165/94‑1 (MQ=60)

                            GTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGA                                                                   >  SRR4302535.809669/1‑94 (MQ=60)

                             TCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGAT                                                                  <  SRR4302535.788429/94‑1 (MQ=60)

                              CGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATA                                                                 >  SRR4302535.1080539/1‑94 (MQ=60)

                               GCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAA                                                                >  SRR4302535.3810834/1‑94 (MQ=60)

                                 CATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGATGTAAGTGTGATAAAC                                                              >  SRR4302535.3841235/1‑94 (MQ=60)

                                 CATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAAC                                                              <  SRR4302535.311709/94‑1 (MQ=60)

                                 CATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAAC                                                              <  SRR4302535.1461078/94‑1 (MQ=60)

                                  ATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACC                                                             >  SRR4302535.3024739/1‑94 (MQ=60)

                                  ATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACC                                                             >  SRR4302535.2026726/1‑94 (MQ=60)

                                   TCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCG                                                            <  SRR4302535.3961420/94‑1 (MQ=60)

                                     GCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAA                                                          >  SRR4302535.903056/1‑94 (MQ=60)

                                      CTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAT                                                         <  SRR4302535.4568686/94‑1 (MQ=60)

                                      CTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAT                                                         >  SRR4302535.3277346/1‑94 (MQ=60)

                                      CTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAT                                                         >  SRR4302535.93951/1‑94 (MQ=60)

                                      CTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAAT                                                         <  SRR4302535.1035557/94‑1 (MQ=60)

                                       TTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATG                                                        <  SRR4302535.1301917/94‑1 (MQ=60)

                                       TTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATG                                                        <  SRR4302535.4170979/94‑1 (MQ=60)

                                        TTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGG                                                       <  SRR4302535.4655147/94‑1 (MQ=60)

                                        TTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGG                                                       <  SRR4302535.4632330/94‑1 (MQ=60)

                                          GGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAA                                                     <  SRR4302535.1641385/94‑1 (MQ=60)

                                            ATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATA                                                   <  SRR4302535.4122076/94‑1 (MQ=60)

                                              AATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGC                                                 <  SRR4302535.2727761/94‑1 (MQ=60)

                                              AATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGC                                                 <  SRR4302535.1630669/94‑1 (MQ=60)

                                              AATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGC                                                 <  SRR4302535.4107702/94‑1 (MQ=60)

                                                 CGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAG                                              >  SRR4302535.2474975/1‑94 (MQ=60)

                                                  GCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTTATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGG                                             <  SRR4302535.2528772/94‑1 (MQ=60)

                                                  GCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGG                                             >  SRR4302535.4259063/1‑94 (MQ=60)

                                                  GCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGG                                             <  SRR4302535.126468/94‑1 (MQ=60)

                                                  GCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGG                                             >  SRR4302535.4011176/1‑94 (MQ=60)

                                                  GCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGG                                             <  SRR4302535.2166143/94‑1 (MQ=60)

                                                   CATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGC                                            >  SRR4302535.2453511/1‑94 (MQ=60)

                                                   CATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGC                                            <  SRR4302535.4302201/94‑1 (MQ=60)

                                                   CATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGC                                            <  SRR4302535.662368/94‑1 (MQ=60)

                                                   CATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGC                                            >  SRR4302535.2271097/1‑94 (MQ=60)

                                                    ATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCG                                           >  SRR4302535.1048937/1‑94 (MQ=60)

                                                    ATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCG                                           <  SRR4302535.1219959/94‑1 (MQ=60)

                                                    ATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCG                                           <  SRR4302535.3221178/94‑1 (MQ=60)

                                                    ATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCG                                           >  SRR4302535.1775596/1‑94 (MQ=60)

                                                      CGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAA                                         <  SRR4302535.2767052/94‑1 (MQ=60)

                                                       GACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAAT                                        <  SRR4302535.866818/94‑1 (MQ=60)

                                                       GACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAAT                                        <  SRR4302535.4075474/94‑1 (MQ=60)

                                                       GACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGGGTGATAAACCGAATGGAATAGCGAGGCGAAG                                        >  SRR4302535.4718089/1‑94 (MQ=60)

                                                         CAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGA                                      >  SRR4302535.2489251/1‑94 (MQ=60)

                                                          AATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAG                                     <  SRR4302535.1557524/94‑1 (MQ=60)

                                                          AATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAG                                     <  SRR4302535.2440989/94‑1 (MQ=60)

                                                          AATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAG                                     >  SRR4302535.1833184/1‑94 (MQ=60)

                                                           ATCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGG                                    <  SRR4302535.4222611/94‑1 (MQ=60)

                                                            TCGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGT                                   <  SRR4302535.901896/94‑1 (MQ=60)

                                                             CGCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTC                                  <  SRR4302535.1304864/94‑1 (MQ=60)

                                                              GCCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCA                                 <  SRR4302535.1251448/94‑1 (MQ=60)

                                                               CCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAA                                >  SRR4302535.3651760/1‑94 (MQ=60)

                                                               CCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAA                                <  SRR4302535.4445928/94‑1 (MQ=60)

                                                               CCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAA                                <  SRR4302535.1670696/94‑1 (MQ=60)

                                                               CCTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAA                                >  SRR4302535.2757120/1‑94 (MQ=60)

                                                                CTGATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAA                               >  SRR4302535.1619660/1‑94 (MQ=60)

                                                                   ATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAAC                            >  SRR4302535.1586262/1‑94 (MQ=60)

                                                                   ATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAAC                            >  SRR4302535.2251027/1‑94 (MQ=60)

                                                                   ATGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAAC                            >  SRR4302535.1071760/1‑94 (MQ=60)

                                                                   ATGCAGATCCAGCTTTATCACTGTGTTGCTGGGAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGGGGTCAAAAAG                            >  SRR4302535.2818512/1‑94 (MQ=60)

                                                                    TGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACG                           <  SRR4302535.3793502/94‑1 (MQ=60)

                                                                    TGCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACG                           <  SRR4302535.4434799/94‑1 (MQ=60)

                                                                     GCAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGG                          >  SRR4302535.1980473/1‑94 (MQ=60)

                                                                      CAGATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGA                         >  SRR4302535.4578441/1‑94 (MQ=60)

                                                                        GATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATT                       >  SRR4302535.581503/1‑94 (MQ=60)

                                                                        GATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATT                       <  SRR4302535.1418835/94‑1 (MQ=60)

                                                                         ATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTG                      >  SRR4302535.186200/1‑94 (MQ=60)

                                                                         ATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTG                      >  SRR4302535.503459/1‑94 (MQ=60)

                                                                         ATCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTG                      <  SRR4302535.11274/94‑1 (MQ=60)

                                                                          TCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGG                     >  SRR4302535.1944467/1‑94 (MQ=60)

                                                                          TCCAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGG                     <  SRR4302535.1664056/94‑1 (MQ=60)

                                                                            CAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCG                   <  SRR4302535.4105168/94‑1 (MQ=60)

                                                                            CAGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCG                   <  SRR4302535.2293543/94‑1 (MQ=60)

                                                                             AGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGC                  >  SRR4302535.2623565/1‑94 (MQ=60)

                                                                             AGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGC                  >  SRR4302535.425885/1‑94 (MQ=60)

                                                                             AGCTTTATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGC                  >  SRR4302535.3687221/1‑94 (MQ=60)

                                                                                  TATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATT             >  SRR4302535.2031028/1‑94 (MQ=60)

                                                                                  TATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATT             <  SRR4302535.4304670/94‑1 (MQ=60)

                                                                                  TATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATAGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATT             <  SRR4302535.2534198/94‑1 (MQ=60)

                                                                                  TATCACTGTGTTGCTGGTAATTGACGTGAAGCAAGTGTGATAAACCGAATGGAATAGCGAGGCGCATGAGGTCAAAAACGGATTGGCGCTCATT             >  SRR4302535.2920578/1‑94 (MQ=60)

                                                                                   ATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTT            >  SRR4302535.1426106/1‑94 (MQ=60)

                                                                                   ATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTT            <  SRR4302535.145180/94‑1 (MQ=60)

                                                                                   ATCACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTT            <  SRR4302535.2946116/94‑1 (MQ=60)

                                                                                     CACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCA          >  SRR4302535.2624862/1‑94 (MQ=60)

                                                                                      ACTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCAT         >  SRR4302535.2005992/1‑94 (MQ=60)

                                                                                       CTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATA        >  SRR4302535.1396806/1‑94 (MQ=60)

                                                                                       CTGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATA        <  SRR4302535.1325954/94‑1 (MQ=60)

                                                                                        TGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAG       <  SRR4302535.2140522/94‑1 (MQ=60)

                                                                                        TGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAG       >  SRR4302535.2988667/1‑94 (MQ=60)

                                                                                        TGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAG       >  SRR4302535.2278654/1‑94 (MQ=60)

                                                                                        TGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAG       <  SRR4302535.2712976/94‑1 (MQ=60)

                                                                                        TGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAG       <  SRR4302535.1239364/94‑1 (MQ=60)

                                                                                        TGTGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAG       >  SRR4302535.334539/1‑94 (MQ=60)

                                                                                          TGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGAT     <  SRR4302535.3555739/94‑1 (MQ=60)

                                                                                          TGTTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGAT     <  SRR4302535.4465952/94‑1 (MQ=60)

                                                                                            TTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATAT   <  SRR4302535.3210457/94‑1 (MQ=60)

                                                                                            TTGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATAT   <  SRR4302535.1576543/94‑1 (MQ=60)

                                                                                             TGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATATG  <  SRR4302535.1638939/94‑1 (MQ=60)

                                                                                             TGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATATG  <  SRR4302535.3387902/94‑1 (MQ=60)

                                                                                             TGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATATG  <  SRR4302535.3129926/94‑1 (MQ=60)

                                                                                             TGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATATG  <  SRR4302535.897445/94‑1 (MQ=60)

                                                                                             TGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATATG  >  SRR4302535.130903/1‑94 (MQ=60)

GCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGATAAACCGAATGGAATAGCGAGGCGAATGAGGTCAAAAACGGATTGGCGCTCATTTCATAGATATG  >  NC_000913/3938281‑3938467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`