Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,945,896	T→C	V63A (GTA→GCA)	yifE →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,945,896	0	T	C	100.0%	895.3 / NA	282	V63A (GTA→GCA)	yifE	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (144/138); total (144/138)

Only 100 of 292 total aligned reads displayed.

AACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGTATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACA  >  NC_000913/3945806‑3945985

aaCTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCAt                                                                                         >  2:4537000/1‑93 (MQ=255)

  cTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGc                                                                                       <  1:3480780/93‑1 (MQ=255)

   tGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGcc                                                                                      >  1:4426168/1‑93 (MQ=255)

    gCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCg                                                                                     >  2:812230/1‑93 (MQ=255)

     cgtGAGCGTCATGGTTATGCCTTCAATGAGTTGTATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGt                                                                                    <  1:2348514/91‑1 (MQ=255)

     cTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGt                                                                                    <  2:492184/93‑1 (MQ=255)

      ttGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTg                                                                                   >  1:3796932/1‑93 (MQ=255)

      ttGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTg                                                                                   >  1:2010598/1‑93 (MQ=255)

      ttGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTg                                                                                   <  1:3020928/93‑1 (MQ=255)

         aGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCg                                                                                >  1:11154/1‑93 (MQ=255)

           cGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGaa                                                                              >  1:4654908/1‑93 (MQ=255)

              cATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGt                                                                           >  1:4116617/1‑93 (MQ=255)

              cATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGt                                                                           <  2:3553933/93‑1 (MQ=255)

              cATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGt                                                                           <  2:2337930/93‑1 (MQ=255)

              cATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGt                                                                           <  2:1704540/93‑1 (MQ=255)

               aTGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTg                                                                          >  2:1000605/1‑93 (MQ=255)

                tGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGa                                                                         >  1:4141858/1‑93 (MQ=255)

                tGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGa                                                                         <  2:3449034/93‑1 (MQ=255)

                tGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGa                                                                         >  2:3192363/1‑93 (MQ=255)

                tGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGGTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTgg                                                                         >  2:68142/1‑92 (MQ=255)

                 ggTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAg                                                                        <  1:2467152/93‑1 (MQ=255)

                 ggTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAg                                                                        <  2:1062497/93‑1 (MQ=255)

                  gTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGc                                                                       >  2:2430243/1‑93 (MQ=255)

                  gTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGc                                                                       >  2:2102276/1‑93 (MQ=255)

                  gTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGc                                                                       >  1:429417/1‑93 (MQ=255)

                   ttATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGcc                                                                      >  1:4061999/1‑93 (MQ=255)

                        ccTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGa                                                                 >  1:1545428/1‑93 (MQ=255)

                         cTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGAc                                                                >  1:2527470/1‑93 (MQ=255)

                          ttCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACa                                                               >  2:3465528/1‑93 (MQ=255)

                          ttCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACa                                                               <  1:1620660/93‑1 (MQ=255)

                             aaTGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGaa                                                            <  2:1750114/93‑1 (MQ=255)

                             aaTGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGaa                                                            >  1:1219812/1‑93 (MQ=255)

                             aaTGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGaa                                                            <  1:2123992/93‑1 (MQ=255)

                             aaTGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGaa                                                            <  1:1434903/93‑1 (MQ=255)

                              aTGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAg                                                           <  1:3559164/93‑1 (MQ=255)

                               tGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGc                                                          >  2:4504896/1‑93 (MQ=255)

                                   tcggATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGaa                                                      >  2:2497291/3‑93 (MQ=255)

                                    tGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAc                                                     <  2:874443/93‑1 (MQ=255)

                                    tGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAc                                                     <  2:1305489/93‑1 (MQ=255)

                                     ggATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGaaag                                                    >  1:3284656/1‑91 (MQ=255)

                                      gATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAcgc                                                   <  1:3985215/93‑1 (MQ=255)

                                        tCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCgt                                                 >  1:2689119/1‑93 (MQ=255)

                                        tCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCgt                                                 >  1:1382291/1‑93 (MQ=255)

                                          ttGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCgtgt                                               <  1:3658445/93‑1 (MQ=255)

                                          ttGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCgtgt                                               >  2:621826/1‑93 (MQ=255)

                                          ttGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCgtgt                                               >  2:3583899/1‑93 (MQ=255)

                                          ttGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCACTGACAGAAGCAGAACGCgtgt                                               <  2:2985923/93‑1 (MQ=255)

                                          ttGACAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCgtgt                                               <  2:3256376/93‑1 (MQ=255)

                                             gCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGt                                            <  1:1329191/93‑1 (MQ=255)

                                             gCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGt                                            <  1:2390639/93‑1 (MQ=255)

                                               aaaCGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTcc                                          <  1:627345/93‑1 (MQ=255)

                                               aaaCGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTcc                                          <  2:1887690/93‑1 (MQ=255)

                                                aaCGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCa                                         >  2:2903275/1‑93 (MQ=255)

                                                    cgAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGta                                     <  2:3797496/93‑1 (MQ=255)

                                                    cgAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGta                                     >  1:3212464/1‑93 (MQ=255)

                                                      aGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGtata                                   <  2:149444/93‑1 (MQ=255)

                                                      aGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGtata                                   <  2:1969155/93‑1 (MQ=255)

                                                       gCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTatat                                  <  2:1162600/93‑1 (MQ=255)

                                                        ccGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATg                                 <  2:3038127/93‑1 (MQ=255)

                                                         cGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTGCAAGTATATGa                                <  2:4429198/93‑1 (MQ=255)

                                                         cGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGa                                <  2:1423417/93‑1 (MQ=255)

                                                         cGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGa                                <  1:3918587/93‑1 (MQ=255)

                                                         cGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGa                                >  1:718531/1‑93 (MQ=255)

                                                          ggTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGAc                               >  2:8360/1‑93 (MQ=255)

                                                             tACCAAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGAcgcg                            <  2:3367339/93‑1 (MQ=255)

                                                               ccGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTa                          <  1:1042631/93‑1 (MQ=255)

                                                                  aGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTa                       <  1:192351/93‑1 (MQ=255)

                                                                  aGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTa                       >  2:3945873/1‑93 (MQ=255)

                                                                   ggAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTaa                      <  1:499660/93‑1 (MQ=255)

                                                                   ggAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTaa                      <  1:1513747/93‑1 (MQ=255)

                                                                   ggAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTaa                      >  2:4436746/1‑93 (MQ=255)

                                                                   ggAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTaa                      <  2:3762882/93‑1 (MQ=255)

                                                                   ggAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGCGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTaa                      <  1:4168439/93‑1 (MQ=255)

                                                                    gAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAg                     >  2:2855277/1‑93 (MQ=255)

                                                                    gAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAg                     >  2:2702066/1‑93 (MQ=255)

                                                                    gAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAg                     <  2:4060688/93‑1 (MQ=255)

                                                                    gAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAg                     <  1:3853203/93‑1 (MQ=255)

                                                                     aaGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGc                    <  1:4546160/93‑1 (MQ=255)

                                                                     aaGAGAAACCCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGc                    <  2:4205063/93‑1 (MQ=255)

                                                                      agagAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCg                   >  1:1677952/1‑93 (MQ=255)

                                                                      agagAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCg                   <  2:4137108/93‑1 (MQ=255)

                                                                       gagaAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCgc                  >  1:1865468/1‑92 (MQ=255)

                                                                       gagaAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCgc                  >  1:3535418/1‑92 (MQ=255)

                                                                       gagaAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGt                  >  1:2883996/1‑93 (MQ=255)

                                                                          aaaCTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCa               <  1:3377095/93‑1 (MQ=255)

                                                                           aaCTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCaa              >  1:220836/1‑93 (MQ=255)

                                                                           aaCTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCaa              >  2:1585988/1‑93 (MQ=255)

                                                                            aCTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCaaa             >  2:905007/1‑93 (MQ=255)

                                                                             ctctTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCaaaa            <  2:3702474/93‑1 (MQ=255)

                                                                             ctctTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCaaaa            >  2:4665763/1‑93 (MQ=255)

                                                                              tctTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAAc           <  2:969647/93‑1 (MQ=255)

                                                                              tctTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAAc           <  2:3513645/93‑1 (MQ=255)

                                                                              tctTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAAc           <  1:2822839/93‑1 (MQ=255)

                                                                                   gTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGtttt      <  2:2174781/93‑1 (MQ=255)

                                                                                   gTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGtttt      <  1:3748398/93‑1 (MQ=255)

                                                                                    tAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTc     >  1:828925/1‑93 (MQ=255)

                                                                                    tAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTc     >  1:1062153/1‑93 (MQ=255)

                                                                                     agcagcATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGCCGCGTATTAAGCGTCCAAAACGATTTca    >  2:2080230/1‑93 (MQ=255)

                                                                                     agcagcATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTca    >  2:2561824/1‑93 (MQ=255)

                                                                                      gcagcaTGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTcac   <  1:919071/93‑1 (MQ=255)

AACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGTATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACA  >  NC_000913/3945806‑3945985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGTATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCCT  >  NC_000913/3945805‑3945989

CAACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCAT                                                                                             <  SRR4302535.167782/94‑1 (MQ=60)

CAACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCAT                                                                                             <  SRR4302535.3802645/94‑1 (MQ=60)

 AACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATG                                                                                            >  SRR4302535.3847145/1‑94 (MQ=60)

   CTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCC                                                                                          >  SRR4302535.3264608/1‑94 (MQ=60)

   CTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCC                                                                                          <  SRR4302535.3504959/94‑1 (MQ=60)

   CTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCC                                                                                          <  SRR4302535.4550567/94‑1 (MQ=60)

   CTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCC                                                                                          >  SRR4302535.4456486/1‑94 (MQ=60)

    TGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCG                                                                                         >  SRR4302535.2183291/1‑94 (MQ=60)

     GCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGT                                                                                        >  SRR4302535.3575596/1‑94 (MQ=60)

     GCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGT                                                                                        >  SRR4302535.1108904/1‑94 (MQ=60)

      CTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTG                                                                                       >  SRR4302535.2025073/1‑94 (MQ=60)

      CTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTG                                                                                       >  SRR4302535.3823107/1‑94 (MQ=60)

      CGTGAGCGTCATGGTTATGCCTTCAATGAGTTGTATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTG                                                                                       <  SRR4302535.2365351/94‑1 (MQ=60)

       TTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGG                                                                                      <  SRR4302535.3042085/94‑1 (MQ=60)

       TTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGG                                                                                      >  SRR4302535.395104/1‑94 (MQ=60)

         GAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCG                                                                                    >  SRR4302535.11240/1‑94 (MQ=60)

          AGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGA                                                                                   <  SRR4302535.3547608/94‑1 (MQ=60)

           GCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAA                                                                                  >  SRR4302535.4686415/1‑94 (MQ=60)

            CGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAAC                                                                                 >  SRR4302535.3840629/1‑94 (MQ=60)

            CGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAAC                                                                                 >  SRR4302535.2728260/1‑94 (MQ=60)

            CGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAAC                                                                                 >  SRR4302535.2093070/1‑94 (MQ=60)

            CGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAAC                                                                                 >  SRR4302535.2883631/1‑94 (MQ=60)

              TCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGT                                                                               <  SRR4302535.1164932/94‑1 (MQ=60)

              TCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGT                                                                               >  SRR4302535.2278858/1‑94 (MQ=60)

              TCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGT                                                                               >  SRR4302535.4144793/1‑94 (MQ=60)

               CATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTG                                                                              >  SRR4302535.4191746/1‑94 (MQ=60)

                ATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGA                                                                             >  SRR4302535.4170221/1‑94 (MQ=60)

                ATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGA                                                                             <  SRR4302535.3280755/94‑1 (MQ=60)

                 TGGTTATGCCTTCAATGAGTTGGATCTTGGCAACCGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAG                                                                            <  SRR4302535.4225140/94‑1 (MQ=60)

                  GGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGC                                                                           <  SRR4302535.2484936/94‑1 (MQ=60)

                  GGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGC                                                                           >  SRR4302535.432402/1‑94 (MQ=60)

                   GTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCC                                                                          >  SRR4302535.4089801/1‑94 (MQ=60)

                    TTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCA                                                                         <  SRR4302535.4161517/94‑1 (MQ=60)

                     TATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAG                                                                        >  SRR4302535.2798618/1‑94 (MQ=60)

                     TATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAG                                                                        >  SRR4302535.870478/1‑94 (MQ=60)

                      ATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGT                                                                       >  SRR4302535.3765904/1‑94 (MQ=60)

                        GCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGA                                                                     >  SRR4302535.443720/1‑94 (MQ=60)

                        GCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGA                                                                     >  SRR4302535.1556556/1‑94 (MQ=60)

                         CCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGAC                                                                    >  SRR4302535.2545677/1‑94 (MQ=60)

                         CCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGAC                                                                    >  SRR4302535.838545/1‑94 (MQ=60)

                         CCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGAC                                                                    <  SRR4302535.1172438/94‑1 (MQ=60)

                         CCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGAC                                                                    <  SRR4302535.4680061/94‑1 (MQ=60)

                           TTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAG                                                                  <  SRR4302535.1632352/94‑1 (MQ=60)

                             CAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAA                                                                >  SRR4302535.2481785/1‑94 (MQ=60)

                             CAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAA                                                                >  SRR4302535.1363830/1‑94 (MQ=60)

                             CAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAA                                                                >  SRR4302535.1228559/1‑94 (MQ=60)

                             CAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAA                                                                >  SRR4302535.1052855/1‑94 (MQ=60)

                              AATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAG                                                               <  SRR4302535.2139301/94‑1 (MQ=60)

                              AATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAG                                                               <  SRR4302535.3804456/94‑1 (MQ=60)

                              AATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAG                                                               <  SRR4302535.1445151/94‑1 (MQ=60)

                               ATGAGTTGGATCTTGGCAACCGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGC                                                              <  SRR4302535.4430904/94‑1 (MQ=60)

                               ATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGC                                                              <  SRR4302535.3583847/94‑1 (MQ=60)

                                agattcGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCAACCGTGAGCCAGTGACAGAAGCA                                                             <  SRR4302535.752531/88‑1 (MQ=60)

                                   GTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAA                                                          >  SRR4302535.3095422/1‑94 (MQ=60)

                                   GTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAA                                                          >  SRR4302535.2255311/1‑94 (MQ=60)

                                    TTGGATCTTGGCAAACGCGAGCCGGTTACCGAGCAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAC                                                         <  SRR4302535.1537652/94‑1 (MQ=60)

                                     TGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAAG                                                        >  SRR4302535.3307488/1‑94 (MQ=60)

                                      GGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGC                                                       >  SRR4302535.1328600/1‑94 (MQ=60)

                                       GATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCG                                                      >  SRR4302535.2500638/1‑94 (MQ=60)

                                       GATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCG                                                      >  SRR4302535.3572630/1‑94 (MQ=60)

                                       GATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCG                                                      <  SRR4302535.4012449/94‑1 (MQ=60)

                                        ATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGT                                                     >  SRR4302535.2708337/1‑94 (MQ=60)

                                        ATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGT                                                     >  SRR4302535.1392151/1‑94 (MQ=60)

                                        ATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGT                                                     <  SRR4302535.2128725/94‑1 (MQ=60)

                                         TCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTG                                                    <  SRR4302535.502300/94‑1 (MQ=60)

                                         TCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTG                                                    <  SRR4302535.3725385/94‑1 (MQ=60)

                                          CTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGT                                                   >  SRR4302535.2557620/1‑94 (MQ=60)

                                          CTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGT                                                   <  SRR4302535.694568/94‑1 (MQ=60)

                                          CTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGT                                                   <  SRR4302535.3150742/94‑1 (MQ=60)

                                           TTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTG                                                  <  SRR4302535.3683770/94‑1 (MQ=60)

                                            TGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGG                                                 <  SRR4302535.4001047/94‑1 (MQ=60)

                                             GGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGT                                                <  SRR4302535.24504/94‑1 (MQ=60)

                                             GGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGT                                                <  SRR4302535.4190375/94‑1 (MQ=60)

                                             GGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGT                                                <  SRR4302535.1394528/94‑1 (MQ=60)

                                              GCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTC                                               <  SRR4302535.1338673/94‑1 (MQ=60)

                                              GCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTC                                               <  SRR4302535.4104397/94‑1 (MQ=60)

                                              GCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTC                                               <  SRR4302535.2407827/94‑1 (MQ=60)

                                               CAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCC                                              >  SRR4302535.3786392/1‑94 (MQ=60)

                                               CAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCC                                              <  SRR4302535.4043096/94‑1 (MQ=60)

                                                AAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCA                                             <  SRR4302535.29192/94‑1 (MQ=60)

                                                AAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCA                                             >  SRR4302535.1073450/1‑94 (MQ=60)

                                                AAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCA                                             <  SRR4302535.631714/94‑1 (MQ=60)

                                                AAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCA                                             >  SRR4302535.2399351/1‑94 (MQ=60)

                                                   CGCGAGCCGGTTACCGAGGAAGAGAAACTGTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGT                                          <  SRR4302535.4078919/94‑1 (MQ=60)

                                                   CGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGT                                          <  SRR4302535.781013/94‑1 (MQ=60)

                                                   CGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGT                                          <  SRR4302535.1945831/94‑1 (MQ=60)

                                                    GCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTA                                         >  SRR4302535.3234712/1‑94 (MQ=60)

                                                     CGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTAT                                        <  SRR4302535.3423202/94‑1 (MQ=60)

                                                      GAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATA                                       >  SRR4302535.1900544/1‑94 (MQ=60)

                                                      GAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATA                                       >  SRR4302535.2906356/1‑94 (MQ=60)

                                                       AGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATAT                                      <  SRR4302535.3655081/94‑1 (MQ=60)

                                                       AGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATAT                                      <  SRR4302535.605049/94‑1 (MQ=60)

                                                        GCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATG                                     <  SRR4302535.4107372/94‑1 (MQ=60)

                                                         CCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGA                                    >  SRR4302535.723581/1‑94 (MQ=60)

                                                         CCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGA                                    <  SRR4302535.1412800/94‑1 (MQ=60)

                                                         CCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGA                                    <  SRR4302535.264452/94‑1 (MQ=60)

                                                          CGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGAC                                   <  SRR4302535.3945391/94‑1 (MQ=60)

                                                          CGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGAC                                   >  SRR4302535.3539853/1‑94 (MQ=60)

                                                           GGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACG                                  <  SRR4302535.4634633/94‑1 (MQ=60)

                                                           GGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACG                                  >  SRR4302535.2372574/1‑94 (MQ=60)

                                                            GTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGC                                 >  SRR4302535.214397/1‑94 (MQ=60)

                                                            GTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGC                                 >  SRR4302535.1706293/1‑94 (MQ=60)

                                                               ACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTA                              >  SRR4302535.1555296/1‑94 (MQ=60)

                                                                CCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTAT                             <  SRR4302535.1050022/94‑1 (MQ=60)

                                                                 CGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATT                            >  SRR4302535.96136/1‑94 (MQ=60)

                                                                 CGAGAAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATT                            <  SRR4302535.1855621/94‑1 (MQ=60)

                                                                  GAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTA                           <  SRR4302535.3601850/94‑1 (MQ=60)

                                                                  GAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTA                           <  SRR4302535.1446801/94‑1 (MQ=60)

                                                                  GAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGGGTGGTCCAAGTATATGACGCGTATTA                           >  SRR4302535.694334/1‑94 (MQ=60)

                                                                   AGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAA                          >  SRR4302535.797416/1‑94 (MQ=60)

                                                                   AGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAA                          >  SRR4302535.4693804/1‑94 (MQ=60)

                                                                   AGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAA                          <  SRR4302535.193678/94‑1 (MQ=60)

                                                                    GGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAG                         <  SRR4302535.1524651/94‑1 (MQ=60)

                                                                    GGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAG                         <  SRR4302535.503162/94‑1 (MQ=60)

                                                                    GGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGCGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAG                         <  SRR4302535.4196982/94‑1 (MQ=60)

                                                                     GAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGC                        <  SRR4302535.3879710/94‑1 (MQ=60)

                                                                     GAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGC                        <  SRR4302535.1254022/94‑1 (MQ=60)

                                                                      AAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAATCG                       <  SRR4302535.4562581/94‑1 (MQ=60)

                                                                      AAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCG                       >  SRR4302535.1913875/1‑94 (MQ=60)

                                                                      AAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCG                       <  SRR4302535.1634278/94‑1 (MQ=60)

                                                                      AAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCG                       >  SRR4302535.3933646/1‑94 (MQ=60)

                                                                      AAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCG                       >  SRR4302535.1690102/1‑94 (MQ=60)

                                                                      AAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCG                       <  SRR4302535.4577245/94‑1 (MQ=60)

                                                                       AGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGT                      >  SRR4302535.2904403/1‑94 (MQ=60)

                                                                       AGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGT                      >  SRR4302535.1592642/1‑94 (MQ=60)

                                                                       AGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGC                      >  SRR4302535.3559961/1‑94 (MQ=60)

                                                                       AGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGC                      >  SRR4302535.1878914/1‑94 (MQ=60)

                                                                        GAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTC                     <  SRR4302535.3905542/94‑1 (MQ=60)

                                                                          GAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCA                   >  SRR4302535.1640225/1‑94 (MQ=60)

                                                                           AAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCCGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAA                  >  SRR4302535.1356310/1‑94 (MQ=60)

                                                                           AAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAA                  >  SRR4302535.222358/1‑94 (MQ=60)

                                                                           AAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAA                  <  SRR4302535.3400576/94‑1 (MQ=60)

                                                                            AACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAA                 >  SRR4302535.3410927/1‑94 (MQ=60)

                                                                            AACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAA                 >  SRR4302535.518011/1‑94 (MQ=60)

                                                                              CTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAAC               <  SRR4302535.1612177/94‑1 (MQ=60)

                                                                               TCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACG              <  SRR4302535.2842879/94‑1 (MQ=60)

                                                                                CTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTGCAAGTATATGACGCGTATTAAGCGTCCAAAACGT             <  SRR4302535.100002/94‑1 (MQ=60)

                                                                                   CGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAGGTATATGACGCGTATTAAGCGTCCAAAACGTTTT          >  SRR4302535.1476315/1‑94 (MQ=60)

                                                                                   CGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTT          >  SRR4302535.2536220/1‑94 (MQ=60)

                                                                                   CGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTT          >  SRR4302535.4262017/1‑94 (MQ=60)

                                                                                    GTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTC         >  SRR4302535.1069714/1‑94 (MQ=60)

                                                                                    GTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTC         >  SRR4302535.834732/1‑94 (MQ=60)

                                                                                    GTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTC         <  SRR4302535.3774331/94‑1 (MQ=60)

                                                                                     TAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCA        <  SRR4302535.2873715/94‑1 (MQ=60)

                                                                                       GCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACA      <  SRR4302535.3390187/94‑1 (MQ=60)

                                                                                       GCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACA      <  SRR4302535.925588/94‑1 (MQ=60)

                                                                                        CAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACAC     >  SRR4302535.40994/1‑94 (MQ=60)

                                                                                        CAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACAC     >  SRR4302535.4502851/1‑94 (MQ=60)

                                                                                        CAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACAC     >  SRR4302535.2567965/1‑94 (MQ=60)

                                                                                        CAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACAC     >  SRR4302535.385482/1‑94 (MQ=60)

                                                                                          GCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCC   <  SRR4302535.4131736/94‑1 (MQ=60)

                                                                                          GCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCC   >  SRR4302535.434206/1‑94 (MQ=60)

                                                                                           CATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCCT  <  SRR4302535.766078/94‑1 (MQ=60)

CAACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGTATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCCT  >  NC_000913/3945805‑3945989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`