Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,950,224 |
A→G |
I40V (ATC→GTC) |
ilvE → |
branched‑chain amino‑acid aminotransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,950,224 | 0 | A | G | 99.6%
| 695.8
/ ‑4.8
| 224 | I40V (ATC→GTC) | ilvE | branched‑chain amino‑acid aminotransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (121/102); total (121/103) |
| Fisher's exact test for biased strand distribution p-value = 4.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.97e-01 |
Only 100 of 229 total aligned reads displayed.
TGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCATCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGC > NC_000913/3950134‑3950313
|
tGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTc < 2:1135664/93‑1 (MQ=255)
tGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTc < 2:2168384/93‑1 (MQ=255)
tCAATGGGGAGATGGTTCGCTGGGAATGCGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGtt < 1:1350268/93‑1 (MQ=255)
tCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGtt > 1:3292360/1‑93 (MQ=255)
tCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGtt > 2:1515549/1‑93 (MQ=255)
tCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGtt > 2:568264/1‑93 (MQ=255)
cAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTg > 1:2097538/1‑93 (MQ=255)
aaTGGGGAGATGGTTCGCTGGGAAGACGCGGAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGc > 1:4001282/1‑93 (MQ=255)
aaTGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGc > 1:454023/1‑93 (MQ=255)
aaTGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGc > 1:2092782/1‑93 (MQ=255)
aTGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCt > 1:4134187/1‑93 (MQ=255)
aTGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCt > 2:67911/1‑93 (MQ=255)
tGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTa > 2:4104462/1‑93 (MQ=255)
gagaTGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGAc < 1:3405610/93‑1 (MQ=255)
gagaTGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGAc < 2:1354018/93‑1 (MQ=255)
gagaTGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGAc > 1:3953771/1‑93 (MQ=255)
gaTGGTTCGCTGGGAAGACGCGAAGGCGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTCCGACTc > 2:1883702/1‑93 (MQ=255)
ttgTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGc < 2:776034/91‑1 (MQ=255)
tGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGc < 2:1064970/93‑1 (MQ=255)
tGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGc < 1:2958008/93‑1 (MQ=255)
tGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGc > 1:2820945/1‑93 (MQ=255)
ggTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGca < 2:4569196/93‑1 (MQ=255)
gTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGcac > 2:3290572/1‑93 (MQ=255)
gTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGcac < 1:1971797/93‑1 (MQ=255)
gTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTAGcac > 2:3171158/1‑93 (MQ=255)
tCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCATCCGTTGCTACGACTCGCACaa < 1:4514231/93‑1 (MQ=255)
tGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGa > 2:2692722/1‑93 (MQ=255)
gggAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGAc < 2:1330096/93‑1 (MQ=255)
aGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGt < 2:1542369/93‑1 (MQ=255)
aGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGt < 2:2824830/93‑1 (MQ=255)
aGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGt > 1:343842/1‑93 (MQ=255)
gcgAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTa < 1:4654555/93‑1 (MQ=255)
gcgAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGGTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTa > 1:1146742/1‑93 (MQ=255)
gcgAAGGTGCATGTGATGTCGCACGCGCCGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTa > 1:1905939/1‑93 (MQ=255)
gAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTAtt < 2:2791237/93‑1 (MQ=255)
gAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTAtt > 2:3082225/1‑93 (MQ=255)
aaGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTc > 1:3752508/1‑93 (MQ=255)
aaGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTc < 2:2625810/93‑1 (MQ=255)
aaGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTc > 2:4315182/1‑93 (MQ=255)
aGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTcc > 2:3243040/1‑93 (MQ=255)
aGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTcc > 2:4294582/1‑93 (MQ=255)
ggTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCg > 2:4601125/1‑93 (MQ=255)
ggTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCg > 1:1295212/1‑93 (MQ=255)
tGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGcc < 2:185065/93‑1 (MQ=255)
tGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGcc > 1:3713876/1‑93 (MQ=255)
tGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGcc < 1:821370/93‑1 (MQ=255)
aTGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATc > 2:1936556/1‑93 (MQ=255)
aTGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATc > 2:3587905/1‑93 (MQ=255)
tgtgATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCg > 2:3381988/1‑93 (MQ=255)
tgtgATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCg < 1:1205389/93‑1 (MQ=255)
tgtgATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCg > 1:3885853/1‑93 (MQ=255)
tgATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTg > 1:1111714/1‑93 (MQ=255)
gATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGa > 1:3013030/1‑93 (MQ=255)
gATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGa < 1:641929/93‑1 (MQ=255)
aTGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTTCGCCATCGTGac > 2:1070861/1‑92 (MQ=255)
aTGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAg < 2:4096263/93‑1 (MQ=255)
aTGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAg > 1:4285682/1‑93 (MQ=255)
cGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCata > 2:1769198/1‑93 (MQ=255)
cGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCata < 1:230228/93‑1 (MQ=255)
cACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATg < 1:536911/93‑1 (MQ=255)
cACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATg > 1:772345/1‑93 (MQ=255)
aCGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGc > 2:1437631/1‑93 (MQ=255)
aCGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGc < 1:4346782/93‑1 (MQ=255)
aCGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGc < 1:1778390/93‑1 (MQ=255)
cgcgCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCa > 1:885103/1‑93 (MQ=255)
cgcgCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCa < 2:2490096/93‑1 (MQ=255)
gcgcTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAg > 1:3084668/1‑93 (MQ=255)
cgcTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGc > 2:3123479/1‑93 (MQ=255)
gcTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCg > 2:372575/1‑93 (MQ=255)
cTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGt > 2:2360999/1‑93 (MQ=255)
tGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTc < 1:2608725/93‑1 (MQ=255)
tGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTc < 1:3840419/93‑1 (MQ=255)
tGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTc < 2:1284579/93‑1 (MQ=255)
cTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCa > 2:2265968/1‑93 (MQ=255)
cTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGGTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCa > 2:1015733/1‑93 (MQ=255)
tGGCACTTCTGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGCCCGGTTGTATTCCGCAATCGTGAGCATATGCAGCGTCTGCATGa < 2:3321374/93‑1 (MQ=255)
tGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGa > 2:4369336/1‑93 (MQ=255)
ggCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGAc < 2:390202/93‑1 (MQ=255)
ggCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGAc < 1:3360353/93‑1 (MQ=255)
cACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTc > 1:1767282/1‑93 (MQ=255)
ccTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTcc < 2:3504353/92‑1 (MQ=255)
aCTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTcc < 1:2380980/93‑1 (MQ=255)
aCTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTcc < 1:947418/93‑1 (MQ=255)
aCTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGCATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTcc > 2:2916772/1‑93 (MQ=255)
cTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCg > 1:1600515/1‑93 (MQ=255)
ttCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGc > 1:1000162/1‑93 (MQ=255)
cGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCa > 1:4367944/1‑93 (MQ=255)
gTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCaca > 2:453290/1‑91 (MQ=255)
tttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCaaaa > 1:3776091/1‑93 (MQ=255)
tttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCaaaa > 2:4316749/1‑93 (MQ=255)
ttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAt > 2:3033061/1‑93 (MQ=255)
ttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAt < 1:4232864/93‑1 (MQ=255)
tttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATc > 1:331697/1‑93 (MQ=255)
tttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGAACGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATc > 2:2437314/1‑93 (MQ=255)
tGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAACATCTa > 1:722535/1‑93 (MQ=255)
tGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTa < 1:3487539/93‑1 (MQ=255)
tGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTa > 1:1819514/1‑93 (MQ=255)
gAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTAt < 1:3796402/93‑1 (MQ=255)
aaGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATc < 1:256888/93‑1 (MQ=255)
ggCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGc < 1:4090016/93‑1 (MQ=255)
|
TGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCATCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGC > NC_000913/3950134‑3950313
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCATCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTTCC > NC_000913/3950131‑3950317
|
ATTTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCG < SRR4302535.4012530/94‑1 (MQ=60)
ATTTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCG < SRR4302535.2309245/94‑1 (MQ=60)
ATTTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCG > SRR4302535.1362393/1‑94 (MQ=60)
TTTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGT > SRR4302535.2982951/1‑94 (MQ=60)
TTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTC < SRR4302535.2952856/94‑1 (MQ=60)
GGTTCAATGGGGAGATGGTTCTCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTTCACTATGGCACTTCGGTTTTTGAAGGCGTCCG < SRR4302535.1497706/94‑1 (MQ=60)
GGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCG > SRR4302535.2111644/1‑94 (MQ=60)
GTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGT < SRR4302535.3932325/94‑1 (MQ=60)
GTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGT > SRR4302535.1121128/1‑94 (MQ=60)
GTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGT > SRR4302535.2902800/1‑94 (MQ=60)
TTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTT > SRR4302535.3315251/1‑94 (MQ=60)
TTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTT < SRR4302535.4363018/94‑1 (MQ=60)
TTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTT > SRR4302535.853015/1‑94 (MQ=60)
TCAATGGGGAGATGGTTCGCTGGGAATGCGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTG < SRR4302535.1359913/94‑1 (MQ=60)
TCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTG > SRR4302535.2112665/1‑94 (MQ=60)
CAATGGGGAGATGGTTCGCTGGGAAGACGCGGAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGC > SRR4302535.4028654/1‑94 (MQ=60)
CAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGC > SRR4302535.1410589/1‑94 (MQ=60)
CAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGC > SRR4302535.457204/1‑94 (MQ=60)
CAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGC > SRR4302535.2107864/1‑94 (MQ=60)
CAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGC > SRR4302535.3131852/1‑94 (MQ=60)
CAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGC > SRR4302535.191193/1‑94 (MQ=60)
AATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCT > SRR4302535.4162492/1‑94 (MQ=60)
AATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCT < SRR4302535.1958372/94‑1 (MQ=60)
TGGGGAGATGGGTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTAC < SRR4302535.675199/94‑1 (MQ=60)
GGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACG < SRR4302535.3422948/94‑1 (MQ=60)
GGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACG < SRR4302535.1669400/94‑1 (MQ=60)
GGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGAC > SRR4302535.3980762/1‑94 (MQ=60)
GAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACT < SRR4302535.3429312/94‑1 (MQ=60)
GAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACT < SRR4302535.3836573/94‑1 (MQ=60)
ATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGC < SRR4302535.4684821/94‑1 (MQ=60)
ATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGC > SRR4302535.2840980/1‑94 (MQ=60)
TGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCA < SRR4302535.2978782/94‑1 (MQ=60)
GGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCAC > SRR4302535.3814580/1‑94 (MQ=60)
GTTCGCTGGGAAGACGCGACGGTGCATGCGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGAGTCCGTTGCTACGACTCGCACA > SRR4302535.2257180/1‑94 (MQ=60)
GTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACA < SRR4302535.1985997/94‑1 (MQ=60)
TCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCATCCGTTGCTACGACTCGCACAAA < SRR4302535.4545185/94‑1 (MQ=60)
GCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAGAGG > SRR4302535.4546265/1‑94 (MQ=60)
GCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGG > SRR4302535.2466125/1‑94 (MQ=60)
GCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGG < SRR4302535.2995061/94‑1 (MQ=60)
CTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGA < SRR4302535.239064/94‑1 (MQ=60)
CTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGA < SRR4302535.345435/94‑1 (MQ=60)
GGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACC > SRR4302535.3096629/1‑94 (MQ=60)
GGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCG < SRR4302535.642094/94‑1 (MQ=60)
AAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGT > SRR4302535.346217/1‑94 (MQ=60)
AAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGT < SRR4302535.399930/94‑1 (MQ=60)
GACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTG < SRR4302535.743128/94‑1 (MQ=60)
CGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGGTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTA > SRR4302535.1154913/1‑94 (MQ=60)
CGCGAAGGTGCATGTGATGTCGCACGCGCCGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTA > SRR4302535.1919656/1‑94 (MQ=60)
GCGAAGGTGCATGTGATGTCGCACGCGCTGCACTGTGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGTTTGTAT < SRR4302535.439488/94‑1 (MQ=60)
GCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTAT < SRR4302535.4686062/94‑1 (MQ=60)
CGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATT < SRR4302535.3694033/94‑1 (MQ=60)
CGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATT > SRR4302535.3063233/1‑94 (MQ=60)
CGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATT > SRR4302535.515780/1‑94 (MQ=60)
GAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTC > SRR4302535.3778477/1‑94 (MQ=60)
AAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCC > SRR4302535.4139766/1‑94 (MQ=60)
AGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCG > SRR4302535.1304450/1‑94 (MQ=60)
GGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGATGTATTCCGC > SRR4302535.335108/1‑94 (MQ=60)
GTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCC > SRR4302535.3739606/1‑94 (MQ=60)
TGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCA < SRR4302535.827131/94‑1 (MQ=60)
TGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTAGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCA > SRR4302535.3319426/1‑94 (MQ=60)
CATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATC > SRR4302535.808739/1‑94 (MQ=60)
ATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCG > SRR4302535.1286672/1‑94 (MQ=60)
ATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCG > SRR4302535.3912507/1‑94 (MQ=60)
TGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGT < SRR4302535.1214048/94‑1 (MQ=60)
GTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTG > SRR4302535.926036/1‑94 (MQ=60)
GTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTG > SRR4302535.1119648/1‑94 (MQ=60)
TGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGA > SRR4302535.3034145/1‑94 (MQ=60)
TGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGA > SRR4302535.2715228/1‑94 (MQ=60)
GATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAG > SRR4302535.4315000/1‑94 (MQ=60)
GATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAG < SRR4302535.646414/94‑1 (MQ=60)
TGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCA > SRR4302535.2600683/1‑94 (MQ=60)
GTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCAT < SRR4302535.493331/94‑1 (MQ=60)
TCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATA < SRR4302535.383909/94‑1 (MQ=60)
TCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATA > SRR4302535.4251597/1‑94 (MQ=60)
CGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATAT < SRR4302535.231816/94‑1 (MQ=60)
CGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATAT > SRR4302535.3752173/1‑94 (MQ=60)
GCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATG > SRR4302535.777779/1‑94 (MQ=60)
CACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGC < SRR4302535.540662/94‑1 (MQ=60)
ACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCA > SRR4302535.891364/1‑94 (MQ=60)
ACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCA < SRR4302535.4376523/94‑1 (MQ=60)
ACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCA < SRR4302535.1278296/94‑1 (MQ=60)
ACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCA < SRR4302535.1791268/94‑1 (MQ=60)
CGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAG > SRR4302535.3106159/1‑94 (MQ=60)
CGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAG < SRR4302535.78228/94‑1 (MQ=60)
GCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGC > SRR4302535.2283418/1‑94 (MQ=60)
GCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGT > SRR4302535.1766070/1‑94 (MQ=60)
CTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTC > SRR4302535.2033144/1‑94 (MQ=60)
TGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCT < SRR4302535.3866883/94‑1 (MQ=60)
TGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCT < SRR4302535.2627446/94‑1 (MQ=60)
CGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCT < SRR4302535.3900209/94‑1 (MQ=60)
CTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCAT < SRR4302535.3989921/94‑1 (MQ=60)
TATGGCACTTTGATTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATG < SRR4302535.1786695/94‑1 (MQ=60)
TATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATG > SRR4302535.1812131/1‑94 (MQ=60)
GGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACT < SRR4302535.3383742/94‑1 (MQ=60)
GCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTC > SRR4302535.1078643/1‑94 (MQ=60)
GCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTC > SRR4302535.1780098/1‑94 (MQ=60)
CACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGGGTCTGCATGACTCC > SRR4302535.960888/1‑94 (MQ=60)
CACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCC < SRR4302535.4187977/94‑1 (MQ=60)
ACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCG < SRR4302535.954132/94‑1 (MQ=60)
ACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCG > SRR4302535.1612062/1‑94 (MQ=60)
ACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCG < SRR4302535.2398079/94‑1 (MQ=60)
CTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGC > SRR4302535.1007272/1‑94 (MQ=60)
TCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCA > SRR4302535.4397833/1‑94 (MQ=60)
CGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAA < SRR4302535.4535518/94‑1 (MQ=60)
GGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGCCCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTCCATGACTCCGCCAAA < SRR4302535.3666147/94‑1 (MQ=60)
GGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAA > SRR4302535.4479594/1‑94 (MQ=60)
GTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAA > SRR4302535.3802125/1‑94 (MQ=60)
TTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAT > SRR4302535.1325840/1‑94 (MQ=60)
TTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAT < SRR4302535.3499642/94‑1 (MQ=60)
TTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATC < SRR4302535.4261830/94‑1 (MQ=60)
TTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATC > SRR4302535.333994/1‑94 (MQ=60)
TTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCT < SRR4302535.4279901/94‑1 (MQ=60)
TTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCT < SRR4302535.3791544/94‑1 (MQ=60)
TTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAACATCTA > SRR4302535.727609/1‑94 (MQ=60)
TTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTA > SRR4302535.1832660/1‑94 (MQ=60)
TGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTAT < SRR4302535.2742842/94‑1 (MQ=60)
TGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTAT < SRR4302535.3511752/94‑1 (MQ=60)
TGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTAT > SRR4302535.1970581/1‑94 (MQ=60)
GAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATC < SRR4302535.3822571/94‑1 (MQ=60)
AAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCG < SRR4302535.258658/94‑1 (MQ=60)
AAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCG > SRR4302535.1213310/1‑94 (MQ=60)
AGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGC > SRR4302535.3412836/1‑94 (MQ=60)
GGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCT < SRR4302535.4118000/94‑1 (MQ=60)
GGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCT < SRR4302535.4055857/94‑1 (MQ=60)
GCGTCCGTTACTACGACTCGCACAAAGGCCCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTT < SRR4302535.479728/94‑1 (MQ=60)
CGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTTC > SRR4302535.3645822/1‑94 (MQ=60)
CGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTTC > SRR4302535.2607830/1‑94 (MQ=60)
GTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTTCC > SRR4302535.1899045/1‑94 (MQ=60)
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ATTTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCATCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTTCC > NC_000913/3950131‑3950317
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
