Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,958,260 |
+C |
intergenic (‑829/‑32) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,958,258 | 1 | . | C | 79.4%
| 150.0
/ 40.6
| 64 | intergenic (‑827/‑34) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (10/3); new base C (22/28); total (33/31) |
| Fisher's exact test for biased strand distribution p-value = 5.96e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.01e-02 |
Only 100 of 111 total aligned reads displayed.
CCGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑CC‑‑T‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCC > NC_000913/3958166‑3958341
|
cGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑t‑‑c > 2:4081931/1‑93 (MQ=255)
cGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑t‑‑c < 2:2098638/93‑1 (MQ=255)
gATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑ttc > 1:976842/1‑91 (MQ=255)
gATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑t‑‑cc > 1:3328748/1‑93 (MQ=255)
gATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGATAGCGGCTTACACGCGGTCACCTTCAAATGCGATTCTGCTA‑C‑AA‑‑t‑‑cc > 2:754235/1‑93 (MQ=255)
aTTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑t‑‑ccc > 2:3173151/1‑92 (MQ=255)
aTTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑t‑‑ccc > 1:1202453/1‑92 (MQ=255)
tttCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑t‑‑cccc > 1:480089/1‑91 (MQ=255)
tttCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑t‑‑cccc > 2:32204/1‑91 (MQ=255)
tttCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑t‑‑cccc > 2:673689/1‑91 (MQ=255)
tCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑t‑‑cccacc > 2:1636796/1‑89 (MQ=255)
ggTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑cc‑‑c‑‑ccccc > 1:4401209/1‑93 (MQ=255)
ggTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑cc‑‑c‑‑ccccc < 2:4501298/93‑1 (MQ=255)
gTCTTCTCTCTCTGCTTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGACTCTGCTA‑C‑AC‑‑A‑‑Cc‑‑c‑‑cccccc > 2:3026830/1‑93 (MQ=255)
gTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑Cc‑‑c‑‑cccccc > 2:3936964/1‑93 (MQ=255)
gTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑Cc‑‑c‑‑cccccc > 1:3723554/1‑93 (MQ=255)
gTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGCTAGCGGCATACACGCGGTCACATTCAAATGCGACTCTGCTA‑C‑AA‑‑T‑‑CC‑‑T‑‑cccccc > 2:3791412/1‑93 (MQ=255)
tcttctCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑CC‑‑C‑‑caccccc > 2:3044620/1‑92 (MQ=255)
ttctCTCTCTGATTTAAACATCCGCAGCCAACTTGTTTGCGGCTTACGCGCGGTCACATTCAAAGGCGATTCTGCTA‑C‑AA‑‑T‑‑Cc‑‑c‑‑cccccccgt < 2:4178842/93‑4 (MQ=255)
ttctCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑Cc‑‑c‑‑ccccccccg > 2:1502607/1‑90 (MQ=255)
ttctCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑Cc‑‑c‑‑ccccccccc > 1:129859/1‑90 (MQ=255)
ctctctctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑T‑‑cccccccgta > 2:2012588/1‑89 (MQ=255)
tctctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGaa < 1:585573/93‑1 (MQ=255)
ctctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑g < 2:3807482/93‑1 (MQ=255)
tgtGATTTAAACCGCCGCGGCCAACCGGGTAGCGGCTTTCCCGGCGTGAAGTTCAAATCCATTTCCGCTACC‑AC‑‑C‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑Ga < 2:2778192/91‑1 (MQ=255)
tctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑Ga < 2:662099/93‑1 (MQ=255)
tctGATTTAAACATCCGCAGCCAACCGGGTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑g < 1:846323/93‑1 (MQ=255)
ctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GAt < 1:3205071/93‑1 (MQ=255)
tGATTTAAACCTCCCGAGCCAACCGGTTAGCGGCTTACCCGCGGTCCCATTCAAATGCGATTCTGCCA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GAt < 2:2763350/93‑1 (MQ=255)
tGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCCCATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GAt < 2:3242446/93‑1 (MQ=255)
tGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GAt < 1:512836/93‑1 (MQ=255)
tGAATTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCTGTTACATACAAATGCGAATCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GAt < 2:3915100/93‑1 (MQ=255)
tttAAACCACCGGAACCAAGCGGTTTGGAGGTTCGACGCGGTGACATTCAAATTGGATTTGGGTG‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGa < 2:720491/93‑1 (MQ=255)
tttAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AACCC‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGa < 1:4623660/93‑1 (MQ=255)
tttAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAg > 1:3104589/1‑93 (MQ=255)
attAAACATCCGCAGCCAACCGGTTAGCCGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGa < 2:4081986/92‑1 (MQ=255)
ttAAACATCCGCAGCCAACCGGTTAGCGGCTTACTCGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCCAA‑GTTTGAg > 2:2992938/1‑93 (MQ=255)
tAAACATCCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGc < 2:906268/93‑1 (MQ=255)
tAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGc < 2:4301858/93‑1 (MQ=255)
tAAACACCCCCAGCCAACCCGGTAGCCGCCTACCCGCCGTCACATTCAAATGCGATTCTGCTA‑C‑AACCC‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGc < 2:4129563/93‑1 (MQ=255)
cATCCGCCGCCAACCGGGTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑Ta < 1:990902/93‑1 (MQ=255)
aTCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑CCCAC‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑Tac < 1:4232044/93‑1 (MQ=255)
accGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑Taca < 1:1514394/92‑1 (MQ=255)
ccGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACAcc < 2:3807158/93‑1 (MQ=255)
gCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCCTTCCAA‑GATTAAGCAA‑CACACCt > 2:2102449/1‑93 (MQ=255)
cAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑At < 2:1813702/93‑1 (MQ=255)
cAGCCAACCCGTTAGCGTCTTACCCGCGGTCCCATTCAAAAGCGAGTCTGCCA‑A‑AAGCC‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑a < 2:811686/93‑1 (MQ=255)
cgCCAACCGGTTAGCGGCTTACACGCGGTCGAATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATg < 2:298492/92‑1 (MQ=255)
cgCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑At < 1:3277072/92‑1 (MQ=255)
gCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑Atc > 1:584662/1‑92 (MQ=255)
ccAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGc < 1:4074116/93‑1 (MQ=255)
cAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TAGACCT‑ATgggc > 2:1904487/1‑90 (MQ=255)
aCCGGTTAGGGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑Tc < 1:4430935/93‑1 (MQ=255)
cgTTAGCGGCTTTCCAGCGGGCCCATTCAAATGGGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTaa < 1:4499007/92‑1 (MQ=255)
gTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAAc < 1:686124/93‑1 (MQ=255)
ttAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTCCCAA‑GATTGACCAA‑TACACTT‑ATGCG‑‑TCTTAAc > 2:3905541/1‑93 (MQ=255)
ttAGCGGCTTACACGCGGTCACATTCAAATGCCATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACATCT‑ATGCG‑‑TCTAAAc < 2:2863190/93‑1 (MQ=255)
cGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCg < 1:2467014/93‑1 (MQ=255)
ggCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCA‑ATACG‑‑TCTAAACCCCgc > 1:2390259/1‑92 (MQ=255)
cTTACACGCGGTCACATTCAAATGCGATTATGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TAAACCT‑ATGGG‑‑CCTAAACCCCGGCca > 1:4102310/1‑93 (MQ=255)
acGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTCCGAA‑GAATGAGAAA‑TACCACT‑ATGCG‑‑TCTAAACCCCGGCcaaaca > 2:1441080/1‑90 (MQ=255)
cgcgGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCcaacaac < 1:4576805/93‑1 (MQ=255)
cgcgGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGCTCGAA‑GATTAAGCAA‑AACACCT‑ATTCG‑‑TCTAAACCCCGCGcaacaaa > 1:192847/1‑92 (MQ=255)
cgaggTCTCATTCAAAATCGATTCGGACA‑C‑AACCC‑‑CC‑‑C‑‑CCCCCCGTGCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TATAAACCCCGGCcaacaac < 2:3609865/90‑1 (MQ=255)
gcgGTCACATTCAAATGCGATTTCGCTA‑A‑AAC‑C‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCcaacaacaa < 1:2117532/93‑1 (MQ=255)
cgGTCACATTCAAATTGCATTCTGCCA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCcaacaacaa < 2:4087260/93‑1 (MQ=255)
ggTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑CC‑‑CCCCCCCCCCCTCCAA‑GCTTGGGAAA‑AACACCT‑ATGCGCCTCAAAACCCCCCacaacaaca > 1:2647443/1‑93 (MQ=255)
ggTCACATTCAAAAGCGATTCTGCTA‑C‑AACCC‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAg < 1:2318301/93‑1 (MQ=255)
gTCACATTCAAATGCGATTCTGCTA‑C‑CACCC‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCAGCCAACAACAAGc < 2:1030714/93‑1 (MQ=255)
gTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGc < 1:824143/93‑1 (MQ=255)
gTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGCTCCAA‑GATTGTGCAA‑TACACCT‑ATTGC‑‑TCCAAACCCCCCCccacaacaacc > 2:2773053/1‑91 (MQ=255)
gTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑CCTAAACCCCGGCcaacaacaaaat > 2:2989211/1‑90 (MQ=255)
gTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑CC‑‑CC‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCt > 2:3472489/1‑93 (MQ=255)
gTCACATTCAAATGCCATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGc < 1:3341274/93‑1 (MQ=255)
cttacaTTCAAATTCAATCCCGCTT‑CAAA‑‑C‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCt < 1:631016/90‑1 (MQ=255)
tCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTTAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCCGCCAACCACAAGCtt > 2:3022422/1‑92 (MQ=255)
tCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTg > 1:768291/1‑93 (MQ=255)
cctttCAAATGCGTTTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGt < 2:910597/90‑1 (MQ=255)
acaTTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑CC‑‑CCCCCCCCCGTTCGAA‑AATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGCCCAACAACAAACTgc > 2:695848/1‑92 (MQ=255)
acaTTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑CC‑‑CCCCCCCCCCTTGGAA‑GATTGACCAA‑TA‑ACCTAATCCT‑‑CCTAAACCCCGCCCAACAAAAACCtcc > 2:731391/1‑91 (MQ=255)
caTTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑CC‑‑CCCCCCCCCGTTCGAA‑GATTG‑GCAACTACACCC‑ATGGG‑‑TCTAAAACCCGGCCAAAAACAAGCttca > 1:4370240/1‑90 (MQ=255)
aTTCAACTGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGGAA‑TACACCT‑ATGCG‑‑TGTAAACCCCGGCCAACAACAAGCTGTCGa > 1:41481/1‑93 (MQ=255)
aTTCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCCTTCGAC‑GATTGAGGAA‑TATACCC‑ACGCG‑‑TCTAAACCCCGGCCAACAAAAAACTGGCg > 1:2757985/1‑93 (MQ=255)
ttCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTTCAG‑GATTTGGAAA‑TAAACCT‑TTTCG‑‑GCTAAAACCCCCCCCACAACAACCTgctga > 2:2929074/1‑89 (MQ=255)
ttCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAG‑GATTGACCAA‑AAAGCCT‑ATGGT‑‑GCTAAACCCCGGCAAACAACAAACTATcta > 2:2951286/1‑91 (MQ=255)
ttCAAATGCGATTCTGCTA‑C‑AA‑‑TACCC‑‑C‑‑CCCCCCCCTCAAA‑GATATACCAA‑TCAACCT‑ATGCG‑‑CCTAAACCCCGACCAACACCAAGCTgctga > 2:1051803/1‑89 (MQ=255)
taaaaTGCCGTTCCGCTA‑C‑AA‑‑C‑‑CC‑‑CCCCCCCCCGTTCGAA‑GATTGAGCAA‑TCCCCCT‑ATGCG‑‑TCTAACCCCCGGCCAACAACAAGCTGTCGaa < 2:2961613/91‑1 (MQ=255)
tCAAATGCGATTTTGCTA‑C‑AAACC‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGaa < 2:42708/93‑1 (MQ=255)
tCAAATGCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAT‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGaa < 2:1113773/93‑1 (MQ=255)
taaaTGCGAATCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGAAt < 1:4533842/92‑1 (MQ=255)
aaaTGCGATTCTGCTA‑C‑AAG‑C‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTc < 1:2604362/93‑1 (MQ=255)
aaggCGATCCTCCTA‑C‑AC‑‑C‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGt < 1:3689792/90‑1 (MQ=255)
aaTGCGATTCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCCGTCTAAGGATTTAGAGA‑AAACCCT‑ATTGG‑‑CCTAAACCCCGGCCAGCAACACGATGTTGaagtt > 2:4332518/1‑90 (MQ=255)
aaTGCGATTCTGCTA‑C‑AA‑‑T‑‑CC‑‑C‑‑CCCCCCGCTCGAA‑GATTTAGCAA‑TACACCC‑ATGCG‑‑TCTAAAAACCGGCCAACAAAAAGCTGTCGAATTCGt > 2:3138943/1‑93 (MQ=255)
gCGATTCTGCTA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGtt < 1:2173362/93‑1 (MQ=255)
cGATTCTGCTA‑C‑AAACC‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTa < 1:3428831/93‑1 (MQ=255)
aTTCTGCCA‑C‑AAC‑C‑‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCg < 2:2355036/93‑1 (MQ=255)
aTTCTGCCA‑C‑AA‑‑TCCCC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAcc < 1:2266535/93‑1 (MQ=255)
ttCTGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACCCCT‑ATGCG‑‑TCTAAACCCCGGCCAAAAACAAGCTGTCGAATTCGTTACCgg > 2:1869179/1‑93 (MQ=255)
tGCTA‑C‑AA‑‑TC‑CC‑‑C‑‑CCCCCCGTTCGAA‑GAGTGGGCCA‑TACACCT‑ATGCG‑‑TCTAACACCCGGCCCACAACAACCTGTCGAATTCGTTACCCGcac > 2:3765369/1‑91 (MQ=255)
|
CCGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑C‑AA‑‑T‑‑CC‑‑T‑‑CCCCCCGTTCGAA‑GATTGAGCAA‑TACACCT‑ATGCG‑‑TCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCC > NC_000913/3958166‑3958341
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑TCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > NC_000913/3958167‑3958353
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CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑TC > SRR4302535.983777/1‑94 (MQ=60)
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC > SRR4302535.3351905/1‑94 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑C > SRR4302535.1211083/1‑94 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑C > SRR4302535.3715114/1‑94 (MQ=60)
ATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CC > SRR4302535.483457/1‑94 (MQ=60)
CGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCC > SRR4302535.4431327/1‑94 (MQ=60)
GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCC > SRR4302535.3749349/1‑94 (MQ=60)
CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccc > SRR4302535.130773/1‑91 (MQ=60)
TTCTTTCTTTGATTTAAACACCCCCAACAAACCGGTTAGGGGCTTACCCGCGGTCCCATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccgt < SRR4302535.3987308/94‑5 (MQ=37)
TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccctt > SRR4302535.1900257/1‑89 (MQ=60)
TCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccctcg > SRR4302535.3376176/1‑87 (MQ=60)
CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccttcga > SRR4302535.4611050/1‑86 (MQ=60)
TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAG < SRR4302535.589677/94‑1 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccgctcgaca > SRR4302535.2905484/1‑84 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccttcgaaa > SRR4302535.2024370/1‑84 (MQ=60)
TCTGATTTAAACATCCGCAGCCAACCGGGTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGA < SRR4302535.852265/94‑1 (MQ=60)
TTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACCCGGGGTCACATTCAAATGCGATTCTGCTACAACC‑C‑‑CC‑‑CCCCCCCGTTCGAAGAT < SRR4302535.2138596/94‑1 (MQ=60)
CTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATT < SRR4302535.3227268/94‑1 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATT < SRR4302535.516420/94‑1 (MQ=60)
ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTTCACGCGGGCACATTCAAATGCGATTCTGCTACAAACCC‑‑CC‑‑CCCCCCCGTTCGAAGATTG < SRR4302535.3175530/94‑1 (MQ=60)
ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAG > SRR4302535.3126205/1‑94 (MQ=60)
TTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAACC‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAG < SRR4302535.4655061/94‑1 (MQ=60)
TTTAAACACCCCCGGCCAACCGGTTAGCGCCTTACCCGCGGTCACCATCAAATGCGATTCTGCCACAACC‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAG < SRR4302535.4488341/94‑1 (MQ=25)
TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccgtccaagattgagg > SRR4302535.1897456/1‑77 (MQ=60)
AACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACCTTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CCcgccccccgcgtcggcgctataccaaa > SRR4302535.2479614/1‑67 (MQ=60)
ACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CCcaccccccccttcacacactgtcacata > SRR4302535.2820450/1‑66 (MQ=60)
CATCCGCCGCCAACCGGGTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TAC < SRR4302535.997935/94‑1 (MQ=60)
CTCCGCAGCCAACCGGTTAGCCGCTTACACGCGGTAACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACA < SRR4302535.1549322/94‑1 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CCCACCCCCCCGTTCGAAGATTGAGCAA‑TACA < SRR4302535.4261008/94‑1 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccctccgcaaattagccataaaa > SRR4302535.3394621/1‑71 (MQ=60)
ACCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACAC < SRR4302535.1525302/94‑1 (MQ=60)
CGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATG < SRR4302535.3299837/94‑1 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATG < SRR4302535.3980717/94‑1 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATC > SRR4302535.588762/1‑94 (MQ=60)
CCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCG < SRR4302535.4101991/94‑1 (MQ=60)
CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccctcctaaaaataagaccaaacacatatgct > SRR4302535.4009678/1‑62 (MQ=60)
ACCGGTTAGGGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCT < SRR4302535.4461296/94‑1 (MQ=60)
cgttagcggctttccagcgggccCATTCAAATGGGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAA < SRR4302535.4529898/71‑1 (MQ=60)
GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccttcgagacttggcaataaaaccattcggcttcac > SRR4302535.4237131/1‑57 (MQ=60)
GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACC < SRR4302535.690931/94‑1 (MQ=60)
GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccggtcgaaagtttagaaatacacacagggttctaaac > SRR4302535.928143/1‑56 (MQ=60)
TTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCC < SRR4302535.657527/94‑1 (MQ=60)
CGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGG < SRR4302535.2484797/94‑1 (MQ=60)
CGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCAATACGTCTAAACCCCGC > SRR4302535.2407445/1‑94 (MQ=60)
GCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccctcgcgaaataacgaaaaaacccatctcttcacacccccccc > SRR4302535.3396798/1‑49 (MQ=60)
GCTTACACGCGGTCACATTCAAATGCGATTATGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TAAACCTATGGGCCTAAACCCCGGCCA > SRR4302535.4130396/1‑94 (MQ=60)
taccgccggtacaATTCAAATGGGATTCTGCTCCAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACA < SRR4302535.3879931/81‑1 (MQ=60)
ACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGCTCGAAGATTAAGCAA‑AACACCTATTCGTCTAAACCCCGcgcaacaaa > SRR4302535.194176/1‑85 (MQ=60)
CGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACA < SRR4302535.4607990/94‑1 (MQ=60)
GCGGTCACATTCAAATGCGATTTCGCTAAAAC‑‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAG < SRR4302535.2132806/94‑1 (MQ=60)
GCGGTCACATTCAAATGCGATTCTGTTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAA < SRR4302535.4504898/94‑1 (MQ=60)
CGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccctccgaagatggggcaaaacctcacccgtctcacccccgcccacacaaaac > SRR4302535.2522563/1‑40 (MQ=60)
CGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccctccaagcttgggaaaaacacctatgcgcctcaaaaccccccacaacaaca > SRR4302535.2666406/1‑40 (MQ=60)
CGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccccccccccattcgcgaataaaaaaaatcattaaacccacaccccaaaaaaa > SRR4302535.3510603/1‑40 (MQ=60)
GGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccggtcgaagatttagaaaaacacattatcgtttaaacgtcccccaataacacgc > SRR4302535.4284713/1‑39 (MQ=60)
GGTCACATTCAAAAGCGATTCTGCTACAACC‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGC < SRR4302535.2334895/94‑1 (MQ=60)
GTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT < SRR4302535.829918/94‑1 (MQ=60)
GTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG > SRR4302535.773698/1‑94 (MQ=60)
GTCACATTCAAATGCCATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT < SRR4302535.3364553/94‑1 (MQ=60)
TCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccttcgacgatgatgaataacaaccaacggtctaaacacccgccacccaccagagt > SRR4302535.1947568/1‑37 (MQ=60)
CACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGGGAAA‑TCAACCAATGCGGCTAAACCCCGGCCAAaaaaaaagtgg > SRR4302535.1380872/1‑83 (MQ=33)
ACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTG‑GCAACTACACCCATGGGTCTAAAACCCGGCCAAAAACAAGCTtca > SRR4302535.4400146/1‑91 (MQ=37)
CATTCAACTGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGGAA‑TACACCTATGCGTGTAAACCCCGGCCAACAACAAGCTGTCGA > SRR4302535.41795/1‑94 (MQ=60)
CATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCCTTCGACGATTGAGGAA‑TATACCCACGCGTCTAAACCCCGGCCAACAAaaaactggcg > SRR4302535.2777637/1‑84 (MQ=35)
TCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAATC > SRR4302535.2788309/1‑94 (MQ=60)
TAAATGCGAATCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT < SRR4302535.4564870/94‑1 (MQ=60)
AAATGCGATTCTGCTACAAG‑‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCG < SRR4302535.2623058/94‑1 (MQ=60)
AAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGGGCAA‑TACACCcctgggccgaacccccagcccacacaaagctgccgaatcc > SRR4302535.580347/1‑54 (MQ=38)
AAAGGCGATTCTGCAACAAC‑‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCG < SRR4302535.2611230/94‑1 (MQ=60)
GCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTA < SRR4302535.2188909/94‑1 (MQ=60)
CGATTCTGCTACAAAC‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC < SRR4302535.3452664/94‑1 (MQ=60)
ATTCTGCCACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG < SRR4302535.2282688/94‑1 (MQ=60)
C‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGCCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTCCCTGGGGCT > SRR4302535.3982444/1‑94 (MQ=60)
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CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑TCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > NC_000913/3958167‑3958353
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
