Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,970,741	T→C	L203P (CTG→CCG)	rffG →	dTDP‑glucose 4,6‑dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,970,741	0	T	C	100.0%	727.9 / NA	228	L203P (CTG→CCG)	rffG	dTDP‑glucose 4,6‑dehydratase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (131/97); total (131/97)

Only 100 of 252 total aligned reads displayed.

CCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCTGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACG  >  NC_000913/3970651‑3970830

 cTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCcgat                                                                                        >  2:1894431/1‑93 (MQ=255)

  tGGCTGCGCACTTATGCTCTGCGGACGTTTATCACCAACCTCTCGAATAACTCCGGCCTTTCCCACTTCCCGGAAAAA‑CTGATCCCGCcgatg                                                                                       <  2:1817830/93‑1 (MQ=255)

      tGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATcc                                                                                   >  1:3769272/1‑93 (MQ=255)

       gCGGACCTATGGTCTGCCGACGCTTATCACCACCCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCt                                                                                  <  1:359423/93‑1 (MQ=255)

       gCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCt                                                                                  >  1:3277335/1‑93 (MQ=255)

        cGGCCCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTCCCGAAAAAA‑CTGATCCCGCCGATGATCCTc                                                                                 <  2:3678423/93‑1 (MQ=255)

          gACCTATGGTCTGCCGACGTTTATCACCACCCGCTCAAATAACTACGGCCCTTCCCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCaa                                                                               <  2:2828241/93‑1 (MQ=255)

          gACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCaa                                                                               >  1:2286651/1‑93 (MQ=255)

          gACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCaa                                                                               >  2:3356984/1‑93 (MQ=255)

          gACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCaa                                                                               <  2:4228097/93‑1 (MQ=255)

          gACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCaa                                                                               <  1:229415/93‑1 (MQ=255)

          gACCTATGGTCGGCCGACGCTTATCCCCACCCGCTCGAATAACTACGGCCCTTACCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCaa                                                                               <  1:143879/93‑1 (MQ=255)

           aCCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAAc                                                                              >  1:2192986/1‑93 (MQ=255)

            ccTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAAcg                                                                             >  2:829830/1‑93 (MQ=255)

            ccTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCACAAcg                                                                             >  1:2440098/1‑93 (MQ=255)

              tATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAAcgcg                                                                           >  2:1240555/1‑93 (MQ=255)

               aTGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACgcgc                                                                          <  1:3908398/93‑1 (MQ=255)

                tGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCt                                                                         <  1:4645179/93‑1 (MQ=255)

                 ggTCTGCCGACTCTTATCCCAAACCGCCCGAATAACTACGGCCCTTACCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTg                                                                        <  1:537774/93‑1 (MQ=255)

                 ggTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTg                                                                        >  1:1152782/1‑93 (MQ=255)

                 ggTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTg                                                                        >  2:105238/1‑93 (MQ=255)

                 ggTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTg                                                                        >  1:3407816/1‑93 (MQ=255)

                    cTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCg                                                                     >  1:1236842/1‑93 (MQ=255)

                     tGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCgg                                                                    >  1:1341721/1‑93 (MQ=255)

                     tGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCgg                                                                    >  2:558954/1‑93 (MQ=255)

                      gCCGACGCTTATCCCCAACCGCTCGAAAAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTAATCCCGCCGATGATCCTCAACGCGCTGGCggg                                                                   <  1:1882020/93‑1 (MQ=255)

                          aCGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTaaa                                                               >  2:4423374/1‑93 (MQ=255)

                           cGCTTATCACCACCCGCTCAAATAACTCCGCCCCTTACCACTTTCCGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAAt                                                              <  2:2579995/93‑1 (MQ=255)

                           cGCTTATCACCACCCCCCGAAATAACTGCGCCCTTTCCCTCTTACCGAAAAAC‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAAt                                                              <  2:2700577/93‑1 (MQ=255)

                           cGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAAt                                                              >  2:1509626/1‑93 (MQ=255)

                            gCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATc                                                             >  1:1048514/1‑93 (MQ=255)

                             cTTATCCCCAACCGCTCAAATAACTCGGCCCCTTCCCACTTCCCGAAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCg                                                            <  2:4490024/93‑1 (MQ=255)

                              ttATCCCCAACCGCTCGAATAACTACGGCCCTTACCACTTCCCGGAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGc                                                           <  2:2032235/93‑1 (MQ=255)

                              ttATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGc                                                           >  2:2117460/1‑93 (MQ=255)

                              ttACCACCACCCGCTCGAATAACTGCGGCCCTTCCCCCTTCCCGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGc                                                           <  2:693763/93‑1 (MQ=255)

                              ttACCACCAACCCCCCGAATAACTACACCCCTTACCAC‑TTCCGGAAAAACCTTCTCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGc                                                           <  2:3308130/93‑1 (MQ=255)

                                  cACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGcc                                                       >  1:2601994/1‑93 (MQ=255)

                                   aCCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCg                                                      >  2:2214871/1‑93 (MQ=255)

                                   aCCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCg                                                      >  1:4004236/1‑93 (MQ=255)

                                      acccgCTCGAATAACTCCGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGta                                                   <  1:2740839/89‑1 (MQ=255)

                                      acccgCTCGAATAACTACGGCCCTTCCCACTTCCCGGAAAAC‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGta                                                   <  2:3820519/89‑1 (MQ=255)

                                      aaCCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCggga                                                   >  1:3360021/1‑91 (MQ=255)

                                      aaCCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGta                                                   >  1:4515346/1‑93 (MQ=255)

                                      aaCCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGta                                                   >  2:4061820/1‑93 (MQ=255)

                                       cccacTCGAATAACTACGCCCCTCACCACTTCCCGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGtat                                                  <  2:2146626/89‑1 (MQ=255)

                                        cggCTCAAAAAACTACGGCCCTCACCATTTCCCGGAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGtata                                                 <  1:773936/91‑1 (MQ=255)

                                        ccgCTCAAATAACTACGCCCCTTCCCACTTTCCGAAAAAC‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGtata                                                 <  1:3041767/91‑1 (MQ=255)

                                         cgCTCAAATACCTCCGGCCCTTCCCACTTCCGGGAAAAC‑CTGAGCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTatat                                                <  1:4167177/92‑1 (MQ=255)

                                          gCTCGAATAACTACGGCCCTTCCCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATg                                               <  1:2072492/93‑1 (MQ=255)

                                          gCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATg                                               >  2:919990/1‑93 (MQ=255)

                                           cTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATgg                                              >  1:4427787/1‑93 (MQ=255)

                                            taaaaTAACTACGCCCCTTACCCCTTCCGGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGc                                             <  2:1227063/90‑1 (MQ=255)

                                              gAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCaa                                           >  2:1439452/1‑93 (MQ=255)

                                               aaTAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAAc                                          >  2:3425197/1‑93 (MQ=255)

                                               aaTAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAAc                                          <  1:3465669/93‑1 (MQ=255)

                                               aaTAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAAc                                          >  1:1530897/1‑93 (MQ=255)

                                               aaTAACTACGGCCCTTACCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAAc                                          <  1:318758/93‑1 (MQ=255)

                                                 tAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGGATATGGCAACgg                                        >  2:3944906/1‑93 (MQ=255)

                                                    cTACGGCCCTTCCCGCTTGCGGAAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGgca                                     <  1:2112707/93‑1 (MQ=255)

                                                    cTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATTGCAACgggta                                     >  2:4179892/1‑91 (MQ=255)

                                                     tACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGgcag                                    >  1:663931/1‑93 (MQ=255)

                                                         gCCTTTACCGCTTCCCGGAAAAT‑CGTATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCaaa                                <  1:690610/93‑1 (MQ=255)

                                                         gCCCTTCCCCCTTACCGAAAAAA‑CCGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCaaa                                <  2:4114730/93‑1 (MQ=255)

                                                         gCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCaaa                                >  1:1647411/1‑93 (MQ=255)

                                                          cccTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAAt                               >  2:3466832/1‑93 (MQ=255)

                                                           ccTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATc                              >  1:1557822/1‑93 (MQ=255)

                                                           ccTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGCAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATc                              >  2:3609054/1‑93 (MQ=255)

                                                            cTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGCAAATCGCTGCCGGTATATGGCAACGGGCAGCAAAttc                             >  1:3103935/1‑91 (MQ=255)

                                                             ttACCACTTTCCGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCg                            <  1:2818498/93‑1 (MQ=255)

                                                              tACCCCTTGCCGAAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGt                           <  2:2746948/93‑1 (MQ=255)

                                                                ccACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGa                         >  2:757004/1‑93 (MQ=255)

                                                                ccACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGa                         >  1:1775684/1‑93 (MQ=255)

                                                                ccACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATACGTGa                         >  2:834204/1‑93 (MQ=255)

                                                                   ctgcccGAAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTg                      <  1:3804125/89‑1 (MQ=255)

                                                                   cTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGTAGCAAATCCGTGACTg                      <  1:568368/93‑1 (MQ=255)

                                                                    tttCCGGAAAAA‑CTGATCCCGCCGCTGATCCTCAACGCGCTGGCGGGGAAATCGCCGCCGGGATATGGCCACGCGGCGGAAAACCGTGACttg                     >  2:3188207/1‑91 (MQ=255)

                                                                    tttCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                     >  2:1987581/1‑93 (MQ=255)

                                                                    tttCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                     >  2:3931910/1‑93 (MQ=255)

                                                                    tttCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                     >  2:2861218/1‑93 (MQ=255)

                                                                    tttCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                     >  1:1701721/1‑93 (MQ=255)

                                                                     tcccGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGc                    <  2:3402062/91‑1 (MQ=255)

                                                                      tCCGAAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCt                   <  2:3738954/93‑1 (MQ=255)

                                                                       ccGAAAAAA‑ATGACCCCGCCGATGATCCTCAACGCGCTGGCGTGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTg                  <  2:1603991/93‑1 (MQ=255)

                                                                        cgaaaaac‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGt                 <  2:349465/90‑1 (MQ=255)

                                                                           aaaaa‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTAtg              >  2:4462352/1‑93 (MQ=255)

                                                                            aaac‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTAtgt             <  2:3072487/93‑1 (MQ=255)

                                                                            aaaa‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTAtgg             >  1:1006273/1‑92 (MQ=255)

                                                                             aaa‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTAtgtg            >  1:2366785/1‑93 (MQ=255)

                                                                                  tGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAg        <  1:2637741/93‑1 (MQ=255)

                                                                                  tGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAg        >  2:2527115/1‑93 (MQ=255)

                                                                                  tGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGGATGTGGAAg        >  1:909255/1‑93 (MQ=255)

                                                                                  tGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAg        <  1:2755649/93‑1 (MQ=255)

                                                                                    accccGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGAt      <  1:1165555/91‑1 (MQ=255)

                                                                                     tCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATTGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATc     >  2:2990406/1‑93 (MQ=255)

                                                                                     tCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGGATGTGGAAGAta     >  1:253722/1‑92 (MQ=255)

                                                                                     ccccGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATc     <  2:2336346/92‑1 (MQ=255)

                                                                                      cccGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCa    <  1:4134208/93‑1 (MQ=255)

                                                                                       ccgccgATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCAc   >  1:126119/1‑93 (MQ=255)

                                                                                       ccgccgATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCAc   <  1:4610071/93‑1 (MQ=255)

                                                                                       ccgccgATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCAc   <  2:16417/93‑1 (MQ=255)

CCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCTGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACG  >  NC_000913/3970651‑3970830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCTGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCG  >  NC_000913/3970649‑3970834

CGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCG                                                                                              >  SRR4302535.3256553/1‑94 (MQ=60)

 GCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGA                                                                                             >  SRR4302535.2305993/1‑94 (MQ=60)

  CCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGAT                                                                                            >  SRR4302535.3582873/1‑94 (MQ=60)

  CCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGAT                                                                                            >  SRR4302535.75237/1‑94 (MQ=60)

   CTGGCTGCGGACCTATGGTCTGCCGACGCTTATCCCCACCCGCTCGAATAACTACGGCCCTTACCCCTTTCCGGAAAAA‑CTGATCCCGCCGATG                                                                                           <  SRR4302535.2658715/94‑1 (MQ=60)

   CTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATG                                                                                           <  SRR4302535.3555237/94‑1 (MQ=60)

   CTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATG                                                                                           >  SRR4302535.2369171/1‑94 (MQ=60)

    TGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGA                                                                                          >  SRR4302535.1136541/1‑94 (MQ=60)

     GGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGAT                                                                                         >  SRR4302535.744272/1‑94 (MQ=60)

     GGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGAT                                                                                         <  SRR4302535.272905/94‑1 (MQ=60)

       CTGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCC                                                                                       >  SRR4302535.3795288/1‑94 (MQ=60)

        TGCGGACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCT                                                                                      >  SRR4302535.3300102/1‑94 (MQ=60)

         GCGGACCTATGGTCTGCCGACGCTTATCACCACCCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTC                                                                                     <  SRR4302535.361912/94‑1 (MQ=60)

           GGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAA                                                                                   >  SRR4302535.2302988/1‑94 (MQ=60)

           GGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAA                                                                                   >  SRR4302535.2302987/1‑94 (MQ=60)

            GACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAAC                                                                                  <  SRR4302535.230998/94‑1 (MQ=60)

            GACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAAC                                                                                  >  SRR4302535.2208615/1‑94 (MQ=60)

            GACCTATGGTCGGCCGACGCTTATCCCCACCCGCTCGAATAACTACGGCCCTTACCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAAC                                                                                  <  SRR4302535.144881/94‑1 (MQ=60)

             ACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACG                                                                                 >  SRR4302535.1908187/1‑94 (MQ=60)

             ACCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCACAACG                                                                                 >  SRR4302535.2457675/1‑94 (MQ=60)

              CCTATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGC                                                                                >  SRR4302535.3817923/1‑94 (MQ=60)

                TATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGC                                                                              >  SRR4302535.3917741/1‑94 (MQ=60)

                 ATGTTCCGCCGCCGCTTATCACCACCCGCGCGAATATCTCCGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCT                                                                             <  SRR4302535.1028299/94‑1 (MQ=60)

                 ATGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCT                                                                             <  SRR4302535.3935169/94‑1 (MQ=60)

                  TGGTCTGCCGACGCTTATCACCACCCGCCGGAATACCTACGGCCCTTACCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTG                                                                            <  SRR4302535.2664107/94‑1 (MQ=60)

                  TGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTG                                                                            >  SRR4302535.3431538/1‑94 (MQ=60)

                  TGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTG                                                                            >  SRR4302535.1161021/1‑94 (MQ=60)

                  TGGTCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTG                                                                            <  SRR4302535.4676658/94‑1 (MQ=60)

                   GGTCTGCCGACTCTTATCCCAAACCGCCCGAATAACTACGGCCCTTACCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGG                                                                           <  SRR4302535.541530/94‑1 (MQ=60)

                     tcntccncccattacccccacccgcgccAATAACTACGGCCCTTACCACTTTCCGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCG                                                                         <  SRR4302535.1388571/66‑1 (MQ=60)

                     TCTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCG                                                                         >  SRR4302535.1245676/1‑94 (MQ=60)

                      CTGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGG                                                                        >  SRR4302535.1351294/1‑94 (MQ=60)

                       TGCCTACGCTTATCACCAGCCGCTCAAATAACTACGCCCCTACCCACTTCCCGGAAAAA‑CATATCCCGCCGATGATCCTCAACGCGCTGGCGGG                                                                       <  SRR4302535.2768122/94‑1 (MQ=32)

                       TGCCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGG                                                                       >  SRR4302535.1458491/1‑94 (MQ=60)

                        GCCGACGCTTATCCCCAACCGCTCGAAAAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTAATCCCGCCGATGATCCTCAACGCGCTGGCGGGT                                                                      <  SRR4302535.1895585/94‑1 (MQ=60)

                         CCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTA                                                                     >  SRR4302535.4697887/1‑94 (MQ=60)

                         CCGACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGCA                                                                     >  SRR4302535.3110493/1‑94 (MQ=60)

                            ACGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAAT                                                                  >  SRR4302535.3862695/1‑94 (MQ=60)

                             CGCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATC                                                                 >  SRR4302535.1055951/1‑94 (MQ=60)

                              GCTTATCACCAACCGCTCGAATAACTACGTCCCTTACCACTTTCCGGAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCG                                                                <  SRR4302535.1295548/94‑1 (MQ=60)

                              GCTTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCG                                                                >  SRR4302535.670466/1‑94 (MQ=60)

                              CCTTATCACCACCCGCTTGAATAACTCCGGCCCTTGCCACTTTCCGGAAAAC‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCG                                                                <  SRR4302535.1692805/94‑1 (MQ=60)

                                TTATCACCACCCGCTCAAATACCTACGGCCCTTACCACTTCCCGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCT                                                              <  SRR4302535.98747/94‑1 (MQ=60)

                                TTATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCT                                                              <  SRR4302535.3624827/94‑1 (MQ=60)

                                 TATCACCAACCGCTCTAATAACTACGGCCCTTACCACTTTCCGAAAAAA‑CGGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTG                                                             <  SRR4302535.1417217/94‑1 (MQ=60)

                                  ATCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGC                                                            >  SRR4302535.3987437/1‑94 (MQ=60)

                                   TCACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCC                                                           >  SRR4302535.2620674/1‑94 (MQ=60)

                                    CACCACCCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCG                                                          <  SRR4302535.621497/94‑1 (MQ=60)

                                    CACCAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCG                                                          >  SRR4302535.4031629/1‑94 (MQ=60)

                                     cccacccGCTCGAATAACTACGGCCCTTACCACTTTCGGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGG                                                         <  SRR4302535.2665775/87‑1 (MQ=60)

                                      caaaccgcgCGAATAACTACGCCCTTTACCACTTCCCGAAAAAA‑CGGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGT                                                        <  SRR4302535.3439988/85‑1 (MQ=60)

                                       CAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTA                                                       >  SRR4302535.4546305/1‑94 (MQ=60)

                                       CAACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGGA                                                       >  SRR4302535.3383408/1‑94 (MQ=60)

                                        acccGCTCGAATAACTGCGGCCCTTCCACCTTTCCGGAAAAA‑CGAAGCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTAT                                                      <  SRR4302535.3132127/90‑1 (MQ=57)

                                        acccGCTCGAATAACTCCGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTAT                                                      <  SRR4302535.2760374/90‑1 (MQ=60)

                                        AACCGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATAGCTGCCGGTAT                                                      >  SRR4302535.3265026/1‑94 (MQ=60)

                                        AACCGCTCGAATAACTACGCCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTAT                                                      <  SRR4302535.2760521/94‑1 (MQ=60)

                                          cggctcaaaaAACTACGGCCCTCACCATTTCCCGGAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATAT                                                    <  SRR4302535.779382/84‑1 (MQ=60)

                                          ccgctggaataacgccgcCCCTTACCACTCTCCGAAAAAA‑CGGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATAT                                                    <  SRR4302535.4220103/76‑1 (MQ=60)

                                          ccgcgCGAATACCTACGGCCCTTACCACTTCCCGGAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATAT                                                    <  SRR4302535.332686/89‑1 (MQ=60)

                                          CCGCTCGAATAACTACGGCCCTTACCCCTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATAT                                                    <  SRR4302535.1546462/94‑1 (MQ=60)

                                          CCGCTCAAATAACTACGCCCCTTCCCACTTTCCGAAAAAC‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATAT                                                    <  SRR4302535.3063079/94‑1 (MQ=60)

                                           cgctcaaatacctcCGGCCCTTCCCACTTCCGGGAAAAC‑CTGAGCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATG                                                   <  SRR4302535.4195711/80‑1 (MQ=60)

                                            GCTCGAATAACTACGGCCCTTCCCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGG                                                  <  SRR4302535.2087424/94‑1 (MQ=60)

                                            GCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATTG                                                  >  SRR4302535.1498535/1‑94 (MQ=60)

                                            GCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGG                                                  >  SRR4302535.4458118/1‑94 (MQ=60)

                                            GCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGG                                                  >  SRR4302535.1121755/1‑94 (MQ=60)

                                             CTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGGCGGGATATGGC                                                 >  SRR4302535.1278062/1‑94 (MQ=60)

                                             CTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGC                                                 >  SRR4302535.2772295/1‑94 (MQ=60)

                                              TCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCA                                                >  SRR4302535.2621578/1‑94 (MQ=60)

                                              TCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCA                                                >  SRR4302535.1249342/1‑94 (MQ=60)

                                              TCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCA                                                >  SRR4302535.4184545/1‑94 (MQ=60)

                                               CGAATAACTACGGCCCTTACCACTTCCCGAAAAAC‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAA                                               <  SRR4302535.4473929/94‑1 (MQ=60)

                                               AGAATAACTGCGCCCCTTACCCCTTCCCGGAAAAA‑TGGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAA                                               <  SRR4302535.1735542/94‑1 (MQ=60)

                                                aaaaAACTACGGCCCTTCCCCCTTTCCGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAAC                                              <  SRR4302535.1205377/90‑1 (MQ=60)

                                                GAATACCTACGCCCCTTCCCACTTCCCGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAAC                                              <  SRR4302535.492560/94‑1 (MQ=60)

                                                GAATAACTACTGCCCTTACCATTTTCCGAAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAAC                                              <  SRR4302535.3201468/94‑1 (MQ=60)

                                                GAATAACTACGGCCCTTCCCACTTCCCGAAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAAC                                              <  SRR4302535.4155252/94‑1 (MQ=60)

                                                GAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTTGTGGGAAAAGCGCTGCCGGTTTATGGCAAC                                              >  SRR4302535.1025984/1‑94 (MQ=60)

                                                GAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAAC                                              >  SRR4302535.2429537/1‑94 (MQ=60)

                                                GAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAAC                                              >  SRR4302535.1541926/1‑94 (MQ=60)

                                                 AATAGCTCCGGCCCTTACCCCTTCCCGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACG                                             <  SRR4302535.1883892/94‑1 (MQ=60)

                                                 AATAACTGCGGCCCTTACCATTTTCCGGAAAAC‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACG                                             <  SRR4302535.1610514/94‑1 (MQ=60)

                                                 AATAACTACGGCCCTTCCCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACG                                             <  SRR4302535.3375039/94‑1 (MQ=60)

                                                 AATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACG                                             <  SRR4302535.3489753/94‑1 (MQ=60)

                                                 AATAACTACGGCCCTTACCACTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACG                                             <  SRR4302535.320965/94‑1 (MQ=60)

                                                  ATAACTGCGCCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGG                                            <  SRR4302535.3753296/94‑1 (MQ=60)

                                                  ATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGG                                            >  SRR4302535.3446332/1‑94 (MQ=60)

                                                  ATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACCG                                            >  SRR4302535.4312020/1‑94 (MQ=60)

                                                    AACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAAaggga                                          >  SRR4302535.2490988/1‑89 (MQ=60)

                                                    AACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGC                                          >  SRR4302535.2196276/1‑94 (MQ=60)

                                                     ACTACGGCCCTTACCACTTCCGGAAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCA                                         <  SRR4302535.2572361/94‑1 (MQ=60)

                                                      ctggtgccctgaccattgaCCGGAAAAG‑CTGACCCCGCCGATGATCCTCAGCGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAG                                        <  SRR4302535.646993/75‑1 (MQ=60)

                                                      CTACGGCCCTTCCCGCTTGCGGAAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAG                                        <  SRR4302535.2127955/94‑1 (MQ=60)

                                                      CTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAG                                        >  SRR4302535.851740/1‑94 (MQ=60)

                                                      CTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAG                                        >  SRR4302535.634332/1‑94 (MQ=60)

                                                      CTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAG                                        >  SRR4302535.668573/1‑94 (MQ=60)

                                                        ACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCA                                      >  SRR4302535.2713607/1‑94 (MQ=60)

                                                         ccggcccttccccctttCGGAAAAACCTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCA                                      <  SRR4302535.1999238/77‑1 (MQ=60)

                                                         CGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAACGGGCAGCAA                                     >  SRR4302535.2161708/1‑94 (MQ=60)

                                                          GGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAA                                    >  SRR4302535.1659320/1‑94 (MQ=60)

                                                           GCCTTTACCGCTTCCCGGAAAAT‑CGTATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAAT                                   <  SRR4302535.695450/94‑1 (MQ=60)

                                                           GCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAAT                                   >  SRR4302535.1170074/1‑94 (MQ=60)

                                                            CCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATC                                  >  SRR4302535.4663864/1‑94 (MQ=60)

                                                            CCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATC                                  >  SRR4302535.1569053/1‑94 (MQ=60)

                                                             CCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCC                                 >  SRR4302535.4549534/1‑94 (MQ=60)

                                                             CCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCC                                 >  SRR4302535.2420103/1‑94 (MQ=60)

                                                             CCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCC                                 >  SRR4302535.2830624/1‑94 (MQ=60)

                                                             CCTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGCAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATTC                                 >  SRR4302535.3125544/1‑94 (MQ=60)

                                                              CTTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCG                                >  SRR4302535.2277302/1‑94 (MQ=60)

                                                               TTACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGT                               >  SRR4302535.3371048/1‑94 (MQ=60)

                                                               TTACCACTTTCCGAAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGT                               <  SRR4302535.2838518/94‑1 (MQ=60)

                                                                TACCACTTCCGGAAAAAA‑CGGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTG                              <  SRR4302535.557776/94‑1 (MQ=60)

                                                                 ACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGA                             <  SRR4302535.816342/94‑1 (MQ=60)

                                                                 ACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGA                             >  SRR4302535.1788543/1‑94 (MQ=60)

                                                                 ACCACTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGA                             >  SRR4302535.1758882/1‑94 (MQ=60)

                                                                   CACTTCCCGGAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACT                           <  SRR4302535.4075886/94‑1 (MQ=60)

                                                                    cccttcccgaaaaaacggcTCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACT                           <  SRR4302535.3417309/75‑1 (MQ=60)

                                                                     ctgcccgaAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGG                         <  SRR4302535.3830348/86‑1 (MQ=60)

                                                                     CTTTCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGG                         >  SRR4302535.1714023/1‑94 (MQ=60)

                                                                     CTTCCCGGAAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGTAGCAAATCCGTGACTGG                         <  SRR4302535.572362/94‑1 (MQ=60)

                                                                            GAAAAA‑CTGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATG                  <  SRR4302535.2615155/94‑1 (MQ=60)

                                                                             gaaaccgtgagCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATG                  <  SRR4302535.2518682/83‑1 (MQ=60)

                                                                             gaaaaaaaaacCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATG                  <  SRR4302535.3836360/83‑1 (MQ=60)

                                                                             AAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGT                 <  SRR4302535.1215093/94‑1 (MQ=60)

                                                                             AAAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGG                 >  SRR4302535.1013424/1‑94 (MQ=60)

                                                                              AAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTG                >  SRR4302535.4593563/1‑94 (MQ=60)

                                                                              AAAA‑CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTG                >  SRR4302535.2383776/1‑94 (MQ=60)

                                                                                   CTGATCCCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGGATGTGGAAG            >  SRR4302535.915714/1‑94 (MQ=60)

                                                                                    TGATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGA           <  SRR4302535.2656635/94‑1 (MQ=60)

                                                                                    TGACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGA           <  SRR4302535.2775290/94‑1 (MQ=60)

                                                                                     GATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGAT          >  SRR4302535.305729/1‑94 (MQ=60)

                                                                                     GATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGAT          >  SRR4302535.2106199/1‑94 (MQ=60)

                                                                                      ATCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGGATGTGGAAGATA         >  SRR4302535.255474/1‑94 (MQ=60)

                                                                                      ACCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATC         <  SRR4302535.1173879/94‑1 (MQ=60)

                                                                                       CCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCTGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCA        <  SRR4302535.2939941/94‑1 (MQ=60)

                                                                                       CCCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCA        <  SRR4302535.1613637/94‑1 (MQ=60)

                                                                                        CCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCAC       <  SRR4302535.4162513/94‑1 (MQ=60)

                                                                                        CCCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCAC       >  SRR4302535.127008/1‑94 (MQ=60)

                                                                                         CCGCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACG      <  SRR4302535.4641393/94‑1 (MQ=60)

                                                                                         CCGCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACG      >  SRR4302535.639881/1‑94 (MQ=60)

                                                                                           GCCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCC    <  SRR4302535.3076373/94‑1 (MQ=60)

                                                                                           GCCGATGATCCTCAACGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCC    >  SRR4302535.1704372/1‑94 (MQ=60)

                                                                                            CCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCC   >  SRR4302535.355385/1‑94 (MQ=60)

                                                                                            CCGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCC   >  SRR4302535.4232997/1‑94 (MQ=60)

                                                                                             CGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCG  >  SRR4302535.3341932/1‑94 (MQ=60)

                                                                                             CGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCG  <  SRR4302535.1519930/94‑1 (MQ=60)

                                                                                             CGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCG  >  SRR4302535.3108450/1‑94 (MQ=60)

CGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAA‑CTGATCCCGCTGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCG  >  NC_000913/3970649‑3970834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`